Wall clock time and date at job start Sat Apr 11 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30416 * 125.97444 * 2 1 4 4 N 1.39928 * 108.95621 * 180.02562 * 3 2 1 5 5 C 1.46506 * 125.74581 * 179.97438 * 4 3 2 6 6 C 1.34343 * 108.50361 * 0.26678 * 4 3 2 7 7 Cl 1.73597 * 126.31917 * 179.73474 * 6 4 3 8 8 C 1.38279 * 107.35938 * 359.57788 * 6 4 3 9 9 C 1.47301 * 126.43388 * 180.15973 * 8 6 4 10 10 O 1.21624 * 120.00036 * 270.30209 * 9 8 6 11 11 N 1.34780 * 120.00054 * 90.30567 * 9 8 6 12 12 C 1.46921 * 120.62989 * 359.71765 * 11 9 8 13 13 C 1.53625 * 108.54521 * 126.36652 * 12 11 9 14 14 C 1.53047 * 109.23737 * 54.85741 * 13 12 11 15 15 C 1.53041 * 109.53692 * 298.51381 * 14 13 12 16 16 H 1.09001 * 109.49753 * 301.40757 * 15 14 13 17 17 C 1.53005 * 109.52217 * 181.33577 * 15 14 13 18 18 N 1.46497 * 109.46913 * 175.14320 * 17 15 14 19 19 C 1.36939 * 119.99946 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99885 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00360 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99653 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00363 * 180.02562 * 21 19 18 24 24 H 1.48509 * 109.46636 * 60.00469 * 23 21 19 25 25 H 1.48493 * 109.47164 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47327 * 300.01106 * 23 21 19 27 27 C 1.46929 * 120.62931 * 179.97438 * 11 9 8 28 28 H 1.08997 * 109.46670 * 89.97694 * 1 2 3 29 29 H 1.08994 * 109.47061 * 209.97547 * 1 2 3 30 30 H 1.09001 * 109.46889 * 329.98068 * 1 2 3 31 31 H 1.09001 * 109.47060 * 90.03166 * 5 4 3 32 32 H 1.09004 * 109.47073 * 210.02655 * 5 4 3 33 33 H 1.09000 * 109.47212 * 330.02738 * 5 4 3 34 34 H 1.08997 * 109.58674 * 246.20393 * 12 11 9 35 35 H 1.09003 * 109.58807 * 6.63078 * 12 11 9 36 36 H 1.09003 * 109.63545 * 294.86912 * 13 12 11 37 37 H 1.08993 * 109.43674 * 174.72283 * 13 12 11 38 38 H 1.08996 * 109.45692 * 178.49556 * 14 13 12 39 39 H 1.08997 * 109.45042 * 58.52419 * 14 13 12 40 40 H 1.08999 * 109.46968 * 295.13890 * 17 15 14 41 41 H 1.08995 * 109.47279 * 55.14494 * 17 15 14 42 42 H 0.97001 * 120.00554 * 359.97438 * 18 17 15 43 43 H 0.96999 * 119.99620 * 179.97438 * 22 21 19 44 44 H 1.08995 * 109.58802 * 353.37613 * 27 11 9 45 45 H 1.09001 * 109.58308 * 113.65399 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2731 1.0554 0.0000 4 7 3.6111 0.6459 -0.0006 5 6 4.7775 1.5324 -0.0013 6 6 3.6459 -0.6971 -0.0069 7 17 5.0708 -1.6886 -0.0166 8 6 2.3373 -1.1437 -0.0006 9 6 1.8922 -2.5479 -0.0008 10 8 1.7080 -3.1273 -1.0542 11 7 1.6890 -3.1906 1.1663 12 6 1.9132 -2.5060 2.4468 13 6 0.6419 -2.6361 3.2995 14 6 0.2742 -4.1156 3.4341 15 6 -0.0133 -4.6996 2.0491 16 1 -0.8262 -4.1440 1.5815 17 6 -0.4132 -6.1700 2.1871 18 7 -0.7998 -6.6961 0.8756 19 6 -1.1981 -8.0003 0.7514 20 1 -1.2276 -8.6410 1.6203 21 6 -1.5649 -8.4987 -0.4911 22 7 -1.5294 -7.7178 -1.5500 23 14 -2.1089 -10.2777 -0.6605 24 1 -3.3053 -10.5123 0.1876 25 1 -2.4442 -10.5599 -2.0793 26 1 -1.0093 -11.1753 -0.2241 27 6 1.2445 -4.5910 1.1822 28 1 -0.3632 0.0004 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5141 31 1 5.0676 1.7520 1.0262 32 1 5.6049 1.0438 -0.5159 33 1 4.5279 2.4609 -0.5147 34 1 2.7533 -2.9674 2.9657 35 1 2.1269 -1.4526 2.2655 36 1 -0.1771 -2.0998 2.8202 37 1 0.8237 -2.2150 4.2882 38 1 -0.6122 -4.2138 4.0608 39 1 1.1036 -4.6556 3.8908 40 1 0.4309 -6.7413 2.5733 41 1 -1.2545 -6.2547 2.8749 42 1 -0.7736 -6.1206 0.0952 43 1 -1.7854 -8.0661 -2.4184 44 1 1.0171 -4.9137 0.1663 45 1 2.0322 -5.2196 1.5976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491163942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:40 Heat of formation + Delta-G solvation = 21.315980 kcal Electronic energy + Delta-G solvation = -28016.277524 eV Core-core repulsion = 24095.575322 eV Total energy + Delta-G solvation = -3920.702202 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.71275 -40.91202 -38.73458 -38.18950 -36.56804 -35.23089 -34.38003 -33.05175 -31.87905 -31.22556 -30.48520 -27.66370 -27.01237 -26.09054 -24.83811 -23.38204 -22.60200 -21.68201 -21.22075 -20.10440 -19.15350 -18.57938 -17.75527 -17.07506 -16.80396 -16.66622 -16.48444 -15.81871 -15.53832 -15.38011 -15.19959 -15.03100 -14.54656 -14.41318 -14.18215 -14.06408 -13.91020 -13.75420 -13.69732 -13.59587 -13.30551 -13.00429 -12.89762 -12.86199 -12.80166 -12.63974 -12.19355 -12.06169 -11.95659 -11.89908 -11.80073 -11.53165 -11.28937 -11.05008 -10.91289 -10.39714 -9.78482 -9.65945 -8.97379 -7.91183 -5.21382 0.09115 0.24062 1.10816 1.41261 1.43336 1.46775 1.51060 1.57279 2.03968 2.57990 3.14440 3.41455 3.64610 3.67462 3.79384 3.92811 3.94226 4.09473 4.17336 4.20447 4.27349 4.31381 4.33515 4.48554 4.58293 4.60983 4.64170 4.71467 4.80470 4.83612 4.84798 4.92352 4.94938 5.08413 5.15272 5.20921 5.28668 5.38022 5.46113 5.50229 5.52287 5.56531 6.24968 6.29228 6.37077 7.10267 7.34876 8.12399 8.34027 9.32029 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016322 B = 0.002894 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.038388 B = 9672.748197 C =10050.455726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.116 3.884 3 N -0.279 5.279 4 N -0.345 5.345 5 C 0.080 3.920 6 C 0.156 3.844 7 Cl 0.023 6.977 8 C -0.271 4.271 9 C 0.592 3.408 10 O -0.579 6.579 11 N -0.593 5.593 12 C 0.107 3.893 13 C -0.124 4.124 14 C -0.105 4.105 15 C -0.093 4.093 16 H 0.056 0.944 17 C 0.159 3.841 18 N -0.748 5.748 19 C -0.245 4.245 20 H 0.079 0.921 21 C -0.080 4.080 22 N -0.971 5.971 23 Si 0.976 3.024 24 H -0.275 1.275 25 H -0.298 1.298 26 H -0.277 1.277 27 C 0.128 3.872 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.026 0.974 41 H 0.029 0.971 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.053 0.947 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.408 23.428 12.328 30.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 N -0.103 5.103 4 N -0.126 5.126 5 C -0.059 4.059 6 C -0.002 4.002 7 Cl 0.051 6.949 8 C -0.288 4.288 9 C 0.379 3.621 10 O -0.459 6.459 11 N -0.324 5.324 12 C -0.014 4.014 13 C -0.162 4.162 14 C -0.142 4.142 15 C -0.113 4.113 16 H 0.074 0.926 17 C 0.032 3.968 18 N -0.391 5.391 19 C -0.377 4.377 20 H 0.097 0.903 21 C -0.272 4.272 22 N -0.622 5.622 23 Si 0.805 3.195 24 H -0.201 1.201 25 H -0.224 1.224 26 H -0.203 1.203 27 C 0.005 3.995 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.044 0.956 41 H 0.046 0.954 42 H 0.203 0.797 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.599 24.254 11.878 30.699 hybrid contribution -0.115 -2.026 -1.168 2.341 sum 14.484 22.228 10.710 28.611 Atomic orbital electron populations 1.20381 0.84275 1.04777 1.04259 1.22531 0.97989 0.87743 0.96689 1.77246 0.85420 1.21194 1.26440 1.48724 1.07198 1.02432 1.54277 1.22531 0.82565 0.94472 1.06283 1.21905 0.89659 0.84989 1.03688 1.98446 1.34487 1.65421 1.96579 1.19625 0.91647 0.94150 1.23359 1.17577 0.76366 0.84932 0.83223 1.90841 1.53228 1.68762 1.33043 1.48143 1.65256 1.12627 1.06416 1.22053 0.99135 0.97787 0.82466 1.21970 0.96797 0.96262 1.01172 1.21501 1.02859 0.95898 0.93986 1.21531 0.96201 0.95832 0.97715 0.92583 1.20839 0.96764 0.92049 0.87153 1.42678 1.80319 1.10169 1.05941 1.19633 1.35321 0.88902 0.93844 0.90289 1.25651 1.03620 1.02419 0.95510 1.69866 1.56305 1.36981 0.99066 0.85173 0.78403 0.79830 0.76119 1.20064 1.22438 1.20268 1.21448 0.96345 0.80961 1.00717 0.89769 0.90586 0.87566 0.87392 0.87695 0.86854 0.89625 0.89474 0.91797 0.87369 0.90283 0.90383 0.95575 0.95358 0.79728 0.94177 0.92845 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.60 10.28 71.24 0.73 -0.87 16 2 C 0.12 2.83 7.18 43.53 0.31 3.15 16 3 N -0.28 -6.22 12.49 -46.66 -0.58 -6.81 16 4 N -0.34 -6.45 3.98 -357.39 -1.42 -7.88 16 5 C 0.08 0.66 11.28 127.77 1.44 2.10 16 6 C 0.16 3.57 7.54 84.32 0.64 4.20 16 7 Cl 0.02 0.46 28.56 -2.72 -0.08 0.38 16 8 C -0.27 -7.53 3.85 -20.12 -0.08 -7.60 16 9 C 0.59 20.49 7.08 86.63 0.61 21.10 16 10 O -0.58 -26.70 16.52 -4.11 -0.07 -26.77 16 11 N -0.59 -17.58 2.97 -822.17 -2.44 -20.02 16 12 C 0.11 2.11 6.37 86.51 0.55 2.66 16 13 C -0.12 -2.10 6.10 30.82 0.19 -1.91 16 14 C -0.10 -2.24 5.17 30.62 0.16 -2.09 16 15 C -0.09 -3.02 2.37 -10.73 -0.03 -3.04 16 16 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 17 C 0.16 6.36 5.66 86.38 0.49 6.85 16 18 N -0.75 -39.98 5.38 -343.45 -1.85 -41.82 16 19 C -0.25 -14.22 9.99 84.03 0.84 -13.38 16 20 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 21 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 22 N -0.97 -63.27 13.06 21.65 0.28 -62.99 16 23 Si 0.98 47.94 29.55 68.60 2.03 49.97 16 24 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 25 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 26 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 27 C 0.13 4.52 5.51 86.35 0.48 5.00 16 28 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.08 1.65 8.01 -2.39 -0.02 1.63 16 30 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.10 0.61 7.76 -2.38 -0.02 0.59 16 33 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.09 1.61 6.27 -2.39 -0.01 1.59 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.37 21.78 6.89 -92.71 -0.64 21.14 16 43 H 0.25 15.80 8.31 -92.71 -0.77 15.03 16 44 H 0.05 2.47 6.20 -2.39 -0.01 2.45 16 45 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -81.34 384.81 3.04 -78.30 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.37 Total: 25.82 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 6.80 Total: 11.82 kcal Atomic # 7 Polarization: -133.51 SS G_CDS: -6.01 Total: -139.52 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.07 Total: -26.77 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Atomic # 17 Polarization: 0.46 SS G_CDS: -0.08 Total: 0.38 kcal Total: -81.34 3.04 -78.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491163942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.612 kcal (2) G-P(sol) polarization free energy of solvation -81.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds