Wall clock time and date at job start Sat Apr 11 2020 05:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 119.99951 * 2 1 4 4 H 1.48504 * 109.46691 * 274.89173 * 3 2 1 5 5 H 1.48498 * 109.47168 * 34.88808 * 3 2 1 6 6 H 1.48492 * 109.47225 * 154.89238 * 3 2 1 7 7 C 1.38806 * 120.00505 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99809 * 339.75151 * 7 2 1 9 9 N 1.36931 * 120.00488 * 159.75489 * 7 2 1 10 10 C 1.46924 * 120.63064 * 332.79847 * 9 7 2 11 11 C 1.53189 * 108.77889 * 233.58623 * 10 9 7 12 12 C 1.53042 * 109.31505 * 305.36695 * 11 10 9 13 13 C 1.53042 * 109.53650 * 61.35961 * 12 11 10 14 14 H 1.09001 * 109.49391 * 58.62534 * 13 12 11 15 15 C 1.53006 * 109.49579 * 178.68357 * 13 12 11 16 16 N 1.46493 * 109.46954 * 185.00274 * 15 13 12 17 17 C 1.34781 * 119.99970 * 180.02562 * 16 15 13 18 18 O 1.21276 * 119.99800 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00171 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.47079 * 179.97438 * 19 17 16 21 21 N 1.46502 * 109.46819 * 179.97438 * 20 19 17 22 22 C 1.35050 * 126.03394 * 125.00212 * 21 20 19 23 23 C 1.35372 * 107.72724 * 179.97438 * 22 21 20 24 24 Cl 1.73596 * 126.04749 * 179.72968 * 23 22 21 25 25 C 1.39932 * 107.90663 * 0.02562 * 23 22 21 26 26 N 1.30842 * 108.21572 * 359.97438 * 25 23 22 27 27 C 1.46932 * 120.63494 * 152.77995 * 9 7 2 28 28 H 0.96999 * 120.00267 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.58915 * 113.79999 * 10 9 7 30 30 H 1.08996 * 109.58478 * 353.37444 * 10 9 7 31 31 H 1.08996 * 109.50441 * 185.41025 * 11 10 9 32 32 H 1.09001 * 109.52111 * 65.33219 * 11 10 9 33 33 H 1.08995 * 109.45685 * 301.34495 * 12 11 10 34 34 H 1.08997 * 109.45015 * 181.37824 * 12 11 10 35 35 H 1.09000 * 109.46631 * 65.00379 * 15 13 12 36 36 H 1.08999 * 109.47001 * 305.00327 * 15 13 12 37 37 H 0.96997 * 120.00528 * 359.97438 * 16 15 13 38 38 H 1.08995 * 109.47138 * 59.99496 * 19 17 16 39 39 H 1.09006 * 109.46815 * 299.99497 * 19 17 16 40 40 H 1.08995 * 109.47359 * 59.99862 * 20 19 17 41 41 H 1.08992 * 109.47035 * 299.99544 * 20 19 17 42 42 H 1.07999 * 126.13685 * 359.97438 * 22 21 20 43 43 H 1.08005 * 125.88872 * 179.97438 * 25 23 22 44 44 H 1.09003 * 109.58348 * 6.62477 * 27 9 7 45 45 H 1.09004 * 109.58692 * 246.20289 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3942 2.1061 -1.3950 5 1 1.5031 2.6207 0.8008 6 1 3.5956 1.4126 0.5940 7 6 2.0103 -1.2020 0.0005 8 1 1.5204 -2.1084 0.3247 9 7 3.3162 -1.2388 -0.4098 10 6 3.8268 -0.2523 -1.3713 11 6 4.4784 -0.9957 -2.5416 12 6 5.5410 -1.9561 -2.0024 13 6 4.8805 -2.9863 -1.0833 14 1 4.1174 -3.5323 -1.6380 15 6 5.9383 -3.9659 -0.5708 16 7 5.2889 -5.0206 0.2113 17 6 6.0291 -6.0010 0.7659 18 8 7.2326 -6.0102 0.6170 19 6 5.3611 -7.0864 1.5701 20 6 6.4188 -8.0658 2.0826 21 7 5.7694 -9.1206 2.8649 22 6 5.8792 -10.4496 2.6519 23 6 5.1301 -11.0802 3.5866 24 17 4.9277 -12.7970 3.7457 25 6 4.5422 -10.1031 4.3977 26 7 4.9250 -8.9288 3.9660 27 6 4.2336 -2.2655 0.1034 28 1 -0.4850 0.8400 -0.0004 29 1 4.5668 0.3832 -0.8847 30 1 3.0030 0.3589 -1.7399 31 1 4.9457 -0.2767 -3.2144 32 1 3.7189 -1.5600 -3.0828 33 1 6.2870 -1.3940 -1.4408 34 1 6.0231 -2.4684 -2.8350 35 1 6.6517 -3.4337 0.0584 36 1 6.4616 -4.4110 -1.4171 37 1 4.3264 -5.0131 0.3308 38 1 4.6482 -7.6186 0.9404 39 1 4.8371 -6.6414 2.4161 40 1 7.1320 -7.5338 2.7122 41 1 6.9424 -8.5106 1.2365 42 1 6.4605 -10.9243 1.8752 43 1 3.8858 -10.2868 5.2355 44 1 3.6781 -2.9826 0.7079 45 1 5.0067 -1.7942 0.7104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690394280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:24 Heat of formation + Delta-G solvation = 49.572138 kcal Electronic energy + Delta-G solvation = -26414.864538 eV Core-core repulsion = 22495.387615 eV Total energy + Delta-G solvation = -3919.476923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.65929 -39.95775 -38.19475 -36.77226 -35.20119 -34.55049 -33.11722 -31.35594 -30.91567 -30.65949 -29.65637 -26.34552 -25.36866 -24.45348 -22.10574 -21.66355 -21.58992 -21.18497 -20.40963 -19.39520 -18.05349 -17.05274 -16.62167 -16.35509 -16.02848 -15.48231 -15.40398 -14.97838 -14.65774 -14.63981 -13.96851 -13.77984 -13.59741 -13.57030 -13.48641 -13.27010 -12.86644 -12.67862 -12.54083 -12.22381 -12.06692 -11.82850 -11.71370 -11.62883 -11.53478 -10.88141 -10.82647 -10.67374 -10.60263 -10.24050 -10.12476 -9.97222 -9.86695 -9.71779 -9.48759 -9.13381 -8.80998 -8.67624 -7.04035 -6.00274 -3.36783 1.32941 1.55874 2.21434 2.38905 2.43957 3.09137 3.28280 3.45122 3.47416 4.09320 4.28489 4.36447 4.48096 4.53282 4.67500 4.76882 4.91115 5.01694 5.08490 5.14937 5.18330 5.20776 5.31673 5.36770 5.42164 5.55057 5.69977 5.73093 5.94328 5.96832 6.03063 6.04648 6.22749 6.30229 6.34636 6.39765 6.49109 6.49938 6.62259 6.64528 6.90193 7.14168 7.36178 7.89203 8.03034 8.26109 8.87402 9.66220 10.03714 11.15453 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017216 B = 0.001913 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.015632 B =14632.466649 C =15797.375748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.884 3.116 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.262 4.262 8 H 0.085 0.915 9 N -0.605 5.605 10 C 0.124 3.876 11 C -0.134 4.134 12 C -0.100 4.100 13 C -0.120 4.120 14 H 0.078 0.922 15 C 0.127 3.873 16 N -0.720 5.720 17 C 0.519 3.481 18 O -0.550 6.550 19 C -0.156 4.156 20 C 0.152 3.848 21 N -0.363 5.363 22 C 0.075 3.925 23 C -0.191 4.191 24 Cl -0.045 7.045 25 C 0.064 3.936 26 N -0.277 5.277 27 C 0.156 3.844 28 H 0.263 0.737 29 H 0.025 0.975 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.406 0.594 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.184 0.816 43 H 0.192 0.808 44 H 0.060 0.940 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.059 -20.383 2.315 24.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.176 4.176 3 Si 0.714 3.286 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.390 4.390 8 H 0.103 0.897 9 N -0.329 5.329 10 C -0.002 4.002 11 C -0.174 4.174 12 C -0.139 4.139 13 C -0.141 4.141 14 H 0.097 0.903 15 C 0.003 3.997 16 N -0.371 5.371 17 C 0.304 3.696 18 O -0.429 6.429 19 C -0.197 4.197 20 C 0.031 3.969 21 N -0.145 5.145 22 C -0.073 4.073 23 C -0.230 4.230 24 Cl -0.017 7.017 25 C -0.123 4.123 26 N -0.098 5.098 27 C 0.030 3.970 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.242 0.758 38 H 0.119 0.881 39 H 0.130 0.870 40 H 0.118 0.882 41 H 0.127 0.873 42 H 0.201 0.799 43 H 0.209 0.791 44 H 0.078 0.922 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 13.723 -19.026 2.321 23.573 hybrid contribution -0.123 -0.020 -0.105 0.162 sum 13.601 -19.045 2.216 23.508 Atomic orbital electron populations 1.69826 1.05727 1.26610 1.52885 1.25270 0.95232 0.97654 0.99406 0.86931 0.80094 0.84618 0.76912 1.21697 1.23167 1.19503 1.18884 0.84702 0.94721 1.40704 0.89746 1.44322 1.08394 1.32771 1.47369 1.21354 0.97160 0.92014 0.89630 1.21998 0.98051 0.98556 0.98762 1.21342 0.97744 0.96726 0.98057 1.21959 0.96985 0.95863 0.99246 0.90346 1.21468 0.95595 0.87757 0.94852 1.46066 1.11579 1.26348 1.53127 1.20224 0.87319 0.82559 0.79465 1.90715 1.14348 1.76673 1.61117 1.21897 0.99584 0.96278 1.01948 1.21531 0.93625 0.86833 0.94890 1.48620 1.37051 1.04859 1.23963 1.22302 1.00442 0.84292 1.00226 1.20793 1.11162 0.86701 1.04341 1.98331 1.96907 1.08824 1.97633 1.23926 0.99882 0.88362 1.00100 1.77527 1.09582 1.22078 1.00650 1.20930 0.92445 0.91256 0.92410 0.92729 0.95670 0.91102 0.92655 0.91715 0.92307 0.92771 0.91409 0.91707 0.75824 0.88099 0.86993 0.88242 0.87349 0.79931 0.79141 0.92190 0.95838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.32 13.97 55.49 0.78 -26.54 16 2 C 0.02 0.66 5.24 -17.43 -0.09 0.57 16 3 Si 0.88 22.06 24.35 -169.99 -4.14 17.92 16 4 H -0.29 -6.98 6.70 56.52 0.38 -6.60 16 5 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 6 H -0.27 -6.62 6.45 56.52 0.36 -6.26 16 7 C -0.26 -7.05 10.04 -15.06 -0.15 -7.20 16 8 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 9 N -0.61 -13.65 2.77 -172.32 -0.48 -14.13 16 10 C 0.12 2.60 4.19 -3.71 -0.02 2.58 16 11 C -0.13 -2.23 6.08 -26.61 -0.16 -2.39 16 12 C -0.10 -1.42 5.17 -26.69 -0.14 -1.56 16 13 C -0.12 -1.71 2.37 -90.50 -0.21 -1.93 16 14 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 15 C 0.13 1.56 5.07 -4.04 -0.02 1.54 16 16 N -0.72 -7.95 5.33 -60.30 -0.32 -8.27 16 17 C 0.52 5.69 7.83 -10.99 -0.09 5.60 16 18 O -0.55 -7.68 15.98 5.56 0.09 -7.59 16 19 C -0.16 -1.28 5.88 -27.89 -0.16 -1.44 16 20 C 0.15 1.18 5.80 -4.04 -0.02 1.16 16 21 N -0.36 -3.18 3.68 -61.33 -0.23 -3.40 16 22 C 0.08 0.57 11.43 -17.16 -0.20 0.37 16 23 C -0.19 -1.60 6.65 -39.97 -0.27 -1.86 16 24 Cl -0.05 -0.35 29.30 -51.86 -1.52 -1.87 16 25 C 0.06 0.57 12.02 -17.34 -0.21 0.36 16 26 N -0.28 -2.89 12.42 30.64 0.38 -2.51 16 27 C 0.16 2.80 5.60 -3.71 -0.02 2.78 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 29 H 0.03 0.53 6.98 -51.93 -0.36 0.17 16 30 H 0.07 1.65 4.50 -51.93 -0.23 1.41 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.41 4.09 7.71 -40.82 -0.31 3.77 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.10 0.84 8.10 -51.93 -0.42 0.42 16 41 H 0.11 0.68 8.03 -51.93 -0.42 0.26 16 42 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.19 1.20 8.06 -52.48 -0.42 0.77 16 44 H 0.06 1.04 7.14 -51.93 -0.37 0.67 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -32.86 377.80 -8.31 -41.17 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.81 Total: 0.96 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -1.76 Total: -1.43 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.13 Total: -54.86 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.09 Total: -7.59 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.14 Total: 17.92 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.52 Total: -1.87 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.86 -8.31 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690394280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.741 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds