Wall clock time and date at job start Sat Apr 11 2020 05:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 119.99951 * 2 1 4 4 H 1.48504 * 109.46691 * 274.89173 * 3 2 1 5 5 H 1.48498 * 109.47168 * 34.88808 * 3 2 1 6 6 H 1.48492 * 109.47225 * 154.89238 * 3 2 1 7 7 C 1.38806 * 120.00505 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99809 * 339.75151 * 7 2 1 9 9 N 1.36931 * 120.00488 * 159.75489 * 7 2 1 10 10 C 1.46924 * 120.63064 * 332.79847 * 9 7 2 11 11 C 1.53189 * 108.77889 * 233.58623 * 10 9 7 12 12 C 1.53042 * 109.31505 * 305.36695 * 11 10 9 13 13 C 1.53042 * 109.53650 * 61.35961 * 12 11 10 14 14 H 1.09001 * 109.49391 * 58.62534 * 13 12 11 15 15 C 1.53006 * 109.49579 * 178.68357 * 13 12 11 16 16 N 1.46493 * 109.46954 * 185.00274 * 15 13 12 17 17 C 1.34781 * 119.99970 * 180.02562 * 16 15 13 18 18 O 1.21276 * 119.99800 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00171 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.47079 * 179.97438 * 19 17 16 21 21 N 1.46502 * 109.46819 * 179.97438 * 20 19 17 22 22 C 1.35050 * 126.03394 * 125.00212 * 21 20 19 23 23 C 1.35372 * 107.72724 * 179.97438 * 22 21 20 24 24 Cl 1.73596 * 126.04749 * 179.72968 * 23 22 21 25 25 C 1.39932 * 107.90663 * 0.02562 * 23 22 21 26 26 N 1.30842 * 108.21572 * 359.97438 * 25 23 22 27 27 C 1.46932 * 120.63494 * 152.77995 * 9 7 2 28 28 H 0.96999 * 120.00267 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.58915 * 113.79999 * 10 9 7 30 30 H 1.08996 * 109.58478 * 353.37444 * 10 9 7 31 31 H 1.08996 * 109.50441 * 185.41025 * 11 10 9 32 32 H 1.09001 * 109.52111 * 65.33219 * 11 10 9 33 33 H 1.08995 * 109.45685 * 301.34495 * 12 11 10 34 34 H 1.08997 * 109.45015 * 181.37824 * 12 11 10 35 35 H 1.09000 * 109.46631 * 65.00379 * 15 13 12 36 36 H 1.08999 * 109.47001 * 305.00327 * 15 13 12 37 37 H 0.96997 * 120.00528 * 359.97438 * 16 15 13 38 38 H 1.08995 * 109.47138 * 59.99496 * 19 17 16 39 39 H 1.09006 * 109.46815 * 299.99497 * 19 17 16 40 40 H 1.08995 * 109.47359 * 59.99862 * 20 19 17 41 41 H 1.08992 * 109.47035 * 299.99544 * 20 19 17 42 42 H 1.07999 * 126.13685 * 359.97438 * 22 21 20 43 43 H 1.08005 * 125.88872 * 179.97438 * 25 23 22 44 44 H 1.09003 * 109.58348 * 6.62477 * 27 9 7 45 45 H 1.09004 * 109.58692 * 246.20289 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3942 2.1061 -1.3950 5 1 1.5031 2.6207 0.8008 6 1 3.5956 1.4126 0.5940 7 6 2.0103 -1.2020 0.0005 8 1 1.5204 -2.1084 0.3247 9 7 3.3162 -1.2388 -0.4098 10 6 3.8268 -0.2523 -1.3713 11 6 4.4784 -0.9957 -2.5416 12 6 5.5410 -1.9561 -2.0024 13 6 4.8805 -2.9863 -1.0833 14 1 4.1174 -3.5323 -1.6380 15 6 5.9383 -3.9659 -0.5708 16 7 5.2889 -5.0206 0.2113 17 6 6.0291 -6.0010 0.7659 18 8 7.2326 -6.0102 0.6170 19 6 5.3611 -7.0864 1.5701 20 6 6.4188 -8.0658 2.0826 21 7 5.7694 -9.1206 2.8649 22 6 5.8792 -10.4496 2.6519 23 6 5.1301 -11.0802 3.5866 24 17 4.9277 -12.7970 3.7457 25 6 4.5422 -10.1031 4.3977 26 7 4.9250 -8.9288 3.9660 27 6 4.2336 -2.2655 0.1034 28 1 -0.4850 0.8400 -0.0004 29 1 4.5668 0.3832 -0.8847 30 1 3.0030 0.3589 -1.7399 31 1 4.9457 -0.2767 -3.2144 32 1 3.7189 -1.5600 -3.0828 33 1 6.2870 -1.3940 -1.4408 34 1 6.0231 -2.4684 -2.8350 35 1 6.6517 -3.4337 0.0584 36 1 6.4616 -4.4110 -1.4171 37 1 4.3264 -5.0131 0.3308 38 1 4.6482 -7.6186 0.9404 39 1 4.8371 -6.6414 2.4161 40 1 7.1320 -7.5338 2.7122 41 1 6.9424 -8.5106 1.2365 42 1 6.4605 -10.9243 1.8752 43 1 3.8858 -10.2868 5.2355 44 1 3.6781 -2.9826 0.7079 45 1 5.0067 -1.7942 0.7104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690394280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:23 Heat of formation + Delta-G solvation = 27.776728 kcal Electronic energy + Delta-G solvation = -26415.809658 eV Core-core repulsion = 22495.387615 eV Total energy + Delta-G solvation = -3920.422043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.28333 -40.90308 -39.56975 -37.37150 -36.40929 -35.26328 -34.71853 -32.87020 -32.31350 -31.52962 -30.37397 -27.54414 -27.02124 -25.31196 -23.68558 -22.94544 -22.22023 -21.95166 -21.35553 -20.66579 -18.81524 -18.66808 -17.67609 -17.24893 -17.15262 -16.90824 -16.41239 -15.89001 -15.64788 -15.49117 -15.34027 -15.11374 -14.87105 -14.58436 -14.43432 -14.23183 -14.12892 -13.94649 -13.58286 -13.47580 -13.28153 -13.17264 -12.73766 -12.56038 -12.45152 -12.26048 -12.17749 -12.11188 -11.70300 -11.57137 -11.44514 -11.36715 -11.26964 -10.98072 -10.67920 -10.59663 -10.08216 -9.43003 -8.92908 -8.16920 -5.48044 0.72513 0.95892 1.28476 1.40328 1.48461 1.56864 1.58765 1.76969 2.25577 2.40679 3.05321 3.31373 3.47849 3.62740 3.82884 3.85652 3.89686 3.97171 4.00934 4.06574 4.25057 4.29956 4.39424 4.40867 4.53997 4.60523 4.64467 4.69924 4.79210 4.80054 4.82488 4.85174 4.98530 5.08543 5.15441 5.26425 5.29489 5.36044 5.44012 5.58183 5.82404 5.86130 6.12290 6.47659 6.51384 6.91702 7.15548 7.62599 8.03314 9.02669 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017216 B = 0.001913 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.015632 B =14632.466649 C =15797.375748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.037 4.037 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.314 1.314 6 H -0.262 1.262 7 C -0.244 4.244 8 H 0.057 0.943 9 N -0.620 5.620 10 C 0.115 3.885 11 C -0.128 4.128 12 C -0.098 4.098 13 C -0.104 4.104 14 H 0.073 0.927 15 C 0.137 3.863 16 N -0.720 5.720 17 C 0.523 3.477 18 O -0.578 6.578 19 C -0.145 4.145 20 C 0.154 3.846 21 N -0.367 5.367 22 C 0.082 3.918 23 C -0.206 4.206 24 Cl -0.042 7.042 25 C 0.060 3.940 26 N -0.314 5.314 27 C 0.151 3.849 28 H 0.260 0.740 29 H 0.030 0.970 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.411 0.589 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.214 0.786 43 H 0.207 0.793 44 H 0.058 0.942 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.490 -21.367 1.223 26.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.232 4.232 3 Si 0.775 3.225 4 H -0.204 1.204 5 H -0.243 1.243 6 H -0.186 1.186 7 C -0.373 4.373 8 H 0.074 0.926 9 N -0.344 5.344 10 C -0.010 4.010 11 C -0.166 4.166 12 C -0.136 4.136 13 C -0.125 4.125 14 H 0.092 0.908 15 C 0.013 3.987 16 N -0.371 5.371 17 C 0.310 3.690 18 O -0.459 6.459 19 C -0.185 4.185 20 C 0.033 3.967 21 N -0.149 5.149 22 C -0.066 4.066 23 C -0.244 4.244 24 Cl -0.014 7.014 25 C -0.126 4.126 26 N -0.135 5.135 27 C 0.026 3.974 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.247 0.753 38 H 0.134 0.866 39 H 0.125 0.875 40 H 0.108 0.892 41 H 0.145 0.855 42 H 0.231 0.769 43 H 0.224 0.776 44 H 0.076 0.924 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 16.195 -20.026 1.220 25.784 hybrid contribution -0.862 0.171 0.254 0.915 sum 15.333 -19.855 1.474 25.130 Atomic orbital electron populations 1.69952 1.07313 1.27075 1.55991 1.25883 0.95821 1.00872 1.00625 0.85933 0.78790 0.80576 0.77231 1.20422 1.24339 1.18634 1.18877 0.86515 0.93504 1.38445 0.92552 1.44475 1.07572 1.34097 1.48260 1.21436 0.96526 0.92097 0.90907 1.21910 0.98417 0.99164 0.97159 1.21364 0.97019 0.96240 0.99001 1.21741 0.97207 0.95982 0.97549 0.90823 1.21296 0.94656 0.87540 0.95224 1.46080 1.11881 1.26195 1.52994 1.20560 0.86876 0.82637 0.78972 1.90704 1.15601 1.77364 1.62208 1.21801 0.99681 0.95579 1.01479 1.21558 0.93204 0.86772 0.95162 1.48678 1.36998 1.05477 1.23751 1.22817 0.99726 0.83742 1.00276 1.20929 1.11760 0.86909 1.04814 1.98330 1.96939 1.08455 1.97658 1.24287 0.99727 0.88201 1.00433 1.77482 1.10997 1.23109 1.01937 1.21119 0.91784 0.90378 0.94103 0.93072 0.95184 0.93744 0.90048 0.92666 0.91551 0.89666 0.91888 0.90550 0.75283 0.86608 0.87480 0.89195 0.85470 0.76943 0.77603 0.92398 0.95513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.47 13.97 21.65 0.30 -59.17 16 2 C -0.04 -2.16 5.24 84.86 0.44 -1.71 16 3 Si 0.94 46.27 24.35 68.60 1.67 47.94 16 4 H -0.28 -12.88 6.70 99.48 0.67 -12.21 16 5 H -0.31 -15.78 7.11 99.48 0.71 -15.07 16 6 H -0.26 -12.27 6.45 99.48 0.64 -11.62 16 7 C -0.24 -13.34 10.04 84.03 0.84 -12.50 16 8 H 0.06 3.33 8.06 -2.91 -0.02 3.31 16 9 N -0.62 -27.56 2.77 -699.11 -1.94 -29.50 16 10 C 0.12 4.64 4.19 86.36 0.36 5.00 16 11 C -0.13 -3.87 6.08 30.67 0.19 -3.68 16 12 C -0.10 -2.41 5.17 30.62 0.16 -2.25 16 13 C -0.10 -2.72 2.37 -10.72 -0.03 -2.75 16 14 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 15 C 0.14 3.00 5.07 86.38 0.44 3.44 16 16 N -0.72 -14.55 5.33 -463.07 -2.47 -17.02 16 17 C 0.52 10.53 7.83 87.65 0.69 11.22 16 18 O -0.58 -15.09 15.98 -3.02 -0.05 -15.14 16 19 C -0.14 -2.15 5.88 29.85 0.18 -1.97 16 20 C 0.15 2.14 5.80 86.38 0.50 2.64 16 21 N -0.37 -5.90 3.68 -347.95 -1.28 -7.18 16 22 C 0.08 1.07 11.43 83.54 0.95 2.03 16 23 C -0.21 -3.15 6.65 22.02 0.15 -3.01 16 24 Cl -0.04 -0.59 29.30 -2.72 -0.08 -0.67 16 25 C 0.06 1.01 12.02 85.25 1.02 2.04 16 26 N -0.31 -6.34 12.42 -56.98 -0.71 -7.05 16 27 C 0.15 5.22 5.60 86.36 0.48 5.70 16 28 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.03 1.19 6.98 -2.39 -0.02 1.17 16 30 H 0.04 2.02 4.50 -2.39 -0.01 2.01 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.41 7.66 7.71 -92.71 -0.71 6.95 16 38 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 40 H 0.09 1.44 8.10 -2.39 -0.02 1.42 16 41 H 0.13 1.28 8.03 -2.39 -0.02 1.26 16 42 H 0.21 1.25 8.06 -2.91 -0.02 1.22 16 43 H 0.21 2.46 8.06 -2.91 -0.02 2.44 16 44 H 0.06 1.99 7.14 -2.39 -0.02 1.97 16 45 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -72.05 377.80 2.01 -70.04 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.18 Total: 13.54 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 6.38 Total: 4.20 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -6.09 Total: -119.91 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.05 Total: -15.14 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.67 Total: 47.94 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -72.05 2.01 -70.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690394280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.819 kcal (2) G-P(sol) polarization free energy of solvation -72.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds