Wall clock time and date at job start Sat Apr 11 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47028 * 240.00373 * 3 2 1 5 5 H 1.48503 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47412 * 119.99982 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.67223 * 31.76284 * 10 9 7 12 12 C 1.54893 * 110.75633 * 268.33095 * 10 9 7 13 13 C 1.54267 * 104.19282 * 203.74048 * 12 10 9 14 14 C 1.53879 * 106.60134 * 23.60896 * 13 12 10 15 15 H 1.08996 * 110.03206 * 240.71356 * 14 13 12 16 16 C 1.52997 * 110.03196 * 119.28084 * 14 13 12 17 17 N 1.46495 * 109.47257 * 67.83445 * 16 14 13 18 18 C 1.34778 * 120.00207 * 179.97438 * 17 16 14 19 19 O 1.21281 * 119.99885 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.99872 * 180.02562 * 18 17 16 21 21 C 1.53006 * 109.47023 * 180.02562 * 20 18 17 22 22 N 1.46499 * 109.47086 * 180.02562 * 21 20 18 23 23 C 1.35043 * 126.03870 * 124.71743 * 22 21 20 24 24 C 1.35381 * 107.72779 * 179.83712 * 23 22 21 25 25 Cl 1.73598 * 126.04823 * 180.15931 * 24 23 22 26 26 C 1.39932 * 107.90508 * 0.42110 * 24 23 22 27 27 N 1.30844 * 108.21246 * 359.73893 * 26 24 23 28 28 C 1.54270 * 106.59395 * 359.97438 * 14 13 12 29 29 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 31 31 H 1.08998 * 110.48267 * 322.41716 * 12 10 9 32 32 H 1.08998 * 110.48580 * 85.06402 * 12 10 9 33 33 H 1.08994 * 110.03630 * 264.31920 * 13 12 10 34 34 H 1.09005 * 110.07246 * 142.91403 * 13 12 10 35 35 H 1.09003 * 109.46907 * 187.83566 * 16 14 13 36 36 H 1.08999 * 109.47243 * 307.83162 * 16 14 13 37 37 H 0.97004 * 119.99936 * 0.02562 * 17 16 14 38 38 H 1.08999 * 109.47802 * 300.00200 * 20 18 17 39 39 H 1.08999 * 109.47403 * 60.00515 * 20 18 17 40 40 H 1.08999 * 109.46831 * 299.99685 * 21 20 18 41 41 H 1.08991 * 109.47064 * 60.00113 * 21 20 18 42 42 H 1.08001 * 126.13782 * 359.97311 * 23 22 21 43 43 H 1.07997 * 125.88947 * 179.72124 * 26 24 23 44 44 H 1.09002 * 110.48043 * 217.71140 * 28 14 13 45 45 H 1.09002 * 110.60152 * 95.12776 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0013 -3.5565 0.5374 12 6 2.2959 -4.1533 -1.4473 13 6 2.4851 -5.6771 -1.2983 14 6 1.7856 -6.0810 0.0114 15 1 2.5077 -6.5179 0.7011 16 6 0.6658 -7.0821 -0.2796 17 7 1.2478 -8.3462 -0.7373 18 6 0.4455 -9.3819 -1.0540 19 8 -0.7582 -9.2672 -0.9604 20 6 1.0442 -10.6824 -1.5242 21 6 -0.0755 -11.6836 -1.8154 22 7 0.5065 -12.9481 -2.2720 23 6 0.2898 -14.1648 -1.7277 24 6 1.0050 -15.0679 -2.4389 25 17 1.0681 -16.7782 -2.1484 26 6 1.6891 -14.3779 -3.4460 27 7 1.3909 -13.1078 -3.3466 28 6 1.1963 -4.7884 0.6130 29 1 -0.4849 0.8400 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 1.4299 -3.9357 -2.0723 32 1 3.1933 -3.6965 -1.8646 33 1 3.5467 -5.9180 -1.2443 34 1 2.0274 -6.1950 -2.1411 35 1 0.0885 -7.2556 0.6285 36 1 0.0124 -6.6813 -1.0545 37 1 2.2106 -8.4381 -0.8118 38 1 1.6216 -10.5094 -2.4324 39 1 1.6976 -11.0829 -0.7491 40 1 -0.6532 -11.8568 -0.9074 41 1 -0.7285 -11.2830 -2.5906 42 1 -0.3425 -14.3794 -0.8788 43 1 2.3494 -14.8179 -4.1786 44 1 1.2908 -4.7954 1.6988 45 1 0.1521 -4.6715 0.3227 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691272389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:34 Heat of formation + Delta-G solvation = 30.327226 kcal Electronic energy + Delta-G solvation = -25568.121316 eV Core-core repulsion = 21647.809871 eV Total energy + Delta-G solvation = -3920.311445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -41.77655 -40.09656 -38.23875 -36.87056 -35.15747 -34.67094 -33.44099 -31.32748 -30.73570 -29.94487 -28.93820 -27.34002 -25.42759 -23.90359 -23.05866 -21.73227 -21.46809 -20.68748 -19.71528 -19.42036 -18.17646 -17.21947 -16.98948 -16.52115 -16.15268 -15.82716 -15.19179 -15.03567 -14.96150 -14.68542 -14.07457 -13.86749 -13.76098 -13.67182 -13.32568 -13.02192 -12.88843 -12.73719 -12.28424 -12.16723 -11.94357 -11.87256 -11.75813 -11.20338 -10.94184 -10.91618 -10.79677 -10.65511 -10.60755 -10.32867 -10.25157 -10.18810 -10.05714 -9.86186 -9.67325 -9.27354 -8.92033 -8.89264 -6.96524 -5.78085 -3.06840 1.21427 1.44683 2.09547 2.27747 2.30639 2.93501 3.42666 3.47195 3.48247 3.96374 4.15991 4.24309 4.39794 4.54701 4.57145 4.74153 4.79930 4.87209 4.88510 5.01232 5.06970 5.18511 5.26753 5.47539 5.49858 5.63417 5.67071 5.84212 5.85045 5.91970 5.96856 5.99907 6.15699 6.27519 6.28211 6.30088 6.42005 6.53174 6.67150 6.84310 7.01913 7.07440 7.20075 7.68316 7.89646 8.40753 9.51579 10.10180 10.44191 11.44459 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.045292 B = 0.001376 C = 0.001360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.063301 B =20350.403958 C =20587.316135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.720 5.720 10 C 0.177 3.823 11 H 0.056 0.944 12 C -0.144 4.144 13 C -0.120 4.120 14 C -0.101 4.101 15 H 0.073 0.927 16 C 0.125 3.875 17 N -0.723 5.723 18 C 0.516 3.484 19 O -0.543 6.543 20 C -0.155 4.155 21 C 0.151 3.849 22 N -0.363 5.363 23 C 0.076 3.924 24 C -0.191 4.191 25 Cl -0.044 7.044 26 C 0.064 3.936 27 N -0.280 5.280 28 C -0.123 4.123 29 H 0.256 0.744 30 H 0.384 0.616 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.402 0.598 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.184 0.816 43 H 0.192 0.808 44 H 0.064 0.936 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.537 -32.528 -3.026 32.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.360 5.360 10 C 0.066 3.934 11 H 0.074 0.926 12 C -0.185 4.185 13 C -0.159 4.159 14 C -0.120 4.120 15 H 0.092 0.908 16 C 0.002 3.998 17 N -0.374 5.374 18 C 0.301 3.699 19 O -0.421 6.421 20 C -0.195 4.195 21 C 0.030 3.970 22 N -0.145 5.145 23 C -0.072 4.072 24 C -0.230 4.230 25 Cl -0.016 7.016 26 C -0.122 4.122 27 N -0.101 5.101 28 C -0.162 4.162 29 H 0.066 0.934 30 H 0.218 0.782 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.236 0.764 38 H 0.128 0.872 39 H 0.118 0.882 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.201 0.799 43 H 0.208 0.792 44 H 0.082 0.918 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.880 -31.073 -3.343 31.384 hybrid contribution 0.563 -0.102 0.276 0.635 sum 3.443 -31.174 -3.066 31.513 Atomic orbital electron populations 1.69649 1.05119 1.25801 1.57523 1.24746 0.95502 0.97701 1.02938 0.86276 0.78534 0.83589 0.77828 1.21288 1.21684 1.21272 1.19220 0.90971 0.84197 1.42924 0.91243 1.42376 1.05752 0.99765 1.88087 1.21154 0.94318 0.85626 0.92291 0.92639 1.23079 1.01385 0.92709 1.01326 1.22213 0.99378 0.98132 0.96139 1.21964 0.96463 0.95627 0.97953 0.90824 1.21615 0.96081 0.82087 0.99973 1.46058 1.10383 1.13343 1.67599 1.20249 0.87122 0.85057 0.77431 1.90752 1.14513 1.83441 1.53359 1.21889 0.99619 0.93300 1.04733 1.21549 0.94365 0.79073 1.02029 1.48606 1.35742 1.06563 1.23566 1.22328 1.00532 0.84635 0.99679 1.20798 1.10727 0.87035 1.04427 1.98336 1.98069 1.09332 1.95850 1.23917 0.99714 0.90077 0.98539 1.77496 1.09303 1.17911 1.05401 1.22608 1.00515 0.93311 0.99771 0.93442 0.78191 0.91845 0.92556 0.92424 0.92419 0.91379 0.90964 0.76388 0.87195 0.88195 0.87243 0.88140 0.79864 0.79151 0.91760 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.03 13.06 55.49 0.72 -27.31 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.64 9.96 -15.06 -0.15 -6.79 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.74 5.23 -51.51 -0.27 -18.01 16 10 C 0.18 3.35 3.56 -65.95 -0.23 3.12 16 11 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 12 C -0.14 -2.42 6.51 -25.07 -0.16 -2.59 16 13 C -0.12 -1.48 6.19 -25.61 -0.16 -1.64 16 14 C -0.10 -1.16 2.96 -89.50 -0.27 -1.43 16 15 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 16 C 0.13 1.40 4.69 -4.05 -0.02 1.38 16 17 N -0.72 -6.31 5.34 -60.30 -0.32 -6.63 16 18 C 0.52 4.85 7.83 -10.99 -0.09 4.77 16 19 O -0.54 -7.19 15.98 5.56 0.09 -7.10 16 20 C -0.15 -0.97 5.88 -27.88 -0.16 -1.13 16 21 C 0.15 0.98 5.80 -4.04 -0.02 0.95 16 22 N -0.36 -2.67 3.68 -61.32 -0.23 -2.89 16 23 C 0.08 0.48 11.43 -17.16 -0.20 0.29 16 24 C -0.19 -1.35 6.65 -39.97 -0.27 -1.62 16 25 Cl -0.04 -0.29 29.30 -51.86 -1.52 -1.81 16 26 C 0.06 0.47 12.02 -17.34 -0.21 0.26 16 27 N -0.28 -2.46 12.42 30.64 0.38 -2.08 16 28 C -0.12 -1.87 5.98 -25.09 -0.15 -2.02 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.38 10.09 7.76 -40.82 -0.32 9.78 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.67 7.61 -51.93 -0.40 0.28 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.40 2.54 8.35 -40.82 -0.34 2.20 16 38 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.11 0.57 8.03 -51.93 -0.42 0.16 16 41 H 0.10 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.19 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.07 1.12 7.73 -51.93 -0.40 0.72 16 LS Contribution 392.05 15.07 5.91 5.91 Total: -1.00 -33.16 392.05 -9.35 -42.50 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.91 Total: 7.15 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -2.18 Total: -6.91 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.29 Total: -56.93 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: 0.09 Total: -7.10 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.52 Total: -1.81 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.16 -9.35 -42.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691272389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.831 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds