Wall clock time and date at job start Sat Apr 11 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42890 * 114.00355 * 2 1 4 4 H 1.08997 * 109.47431 * 329.99821 * 3 2 1 5 5 C 1.52998 * 109.47161 * 209.99927 * 3 2 1 6 6 C 1.50700 * 109.47080 * 65.00165 * 5 3 2 7 7 O 1.21277 * 119.99983 * 359.97438 * 6 5 3 8 8 N 1.34779 * 120.00228 * 180.02562 * 6 5 3 9 9 C 1.46497 * 120.00182 * 185.03676 * 8 6 5 10 10 C 1.53002 * 113.28207 * 289.45777 * 9 8 6 11 11 C 1.52998 * 109.46697 * 314.59838 * 10 9 8 12 12 O 1.42902 * 109.46958 * 185.07890 * 11 10 9 13 13 C 1.53501 * 114.20639 * 62.51783 * 9 8 6 14 14 N 1.47068 * 87.98176 * 87.52432 * 13 9 8 15 15 C 1.36945 * 136.05441 * 207.09017 * 14 13 9 16 16 H 1.07997 * 119.99826 * 6.73807 * 15 14 13 17 17 C 1.38816 * 119.99625 * 186.74210 * 15 14 13 18 18 N 1.31618 * 120.00026 * 6.21058 * 17 15 14 19 19 Si 1.86795 * 119.99593 * 186.48846 * 17 15 14 20 20 H 1.48500 * 109.47251 * 264.74012 * 19 17 15 21 21 H 1.48501 * 109.47472 * 24.73753 * 19 17 15 22 22 H 1.48503 * 109.47337 * 144.74067 * 19 17 15 23 23 C 1.47061 * 87.88739 * 27.33992 * 14 13 9 24 24 C 1.53001 * 109.47438 * 89.99975 * 3 2 1 25 25 F 1.39898 * 109.47302 * 179.97438 * 24 3 2 26 26 F 1.39895 * 109.47176 * 300.00289 * 24 3 2 27 27 F 1.39906 * 109.47078 * 60.00133 * 24 3 2 28 28 H 1.09003 * 109.46973 * 300.00227 * 1 2 3 29 29 H 1.08996 * 109.47416 * 59.99645 * 1 2 3 30 30 H 1.09003 * 109.47631 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47469 * 304.99951 * 5 3 2 32 32 H 1.09003 * 109.47228 * 184.99870 * 5 3 2 33 33 H 0.96998 * 119.99897 * 5.03419 * 8 6 5 34 34 H 1.08997 * 109.47414 * 74.59785 * 10 9 8 35 35 H 1.08999 * 109.46847 * 194.60307 * 10 9 8 36 36 H 1.08996 * 109.47758 * 305.08009 * 11 10 9 37 37 H 1.08998 * 109.47177 * 65.08083 * 11 10 9 38 38 H 0.96709 * 114.00068 * 180.02562 * 12 11 10 39 39 H 1.08994 * 113.46712 * 332.74674 * 13 9 8 40 40 H 1.09001 * 113.52027 * 202.30342 * 13 9 8 41 41 H 0.96998 * 119.99820 * 180.27470 * 18 17 15 42 42 H 1.09007 * 113.46632 * 87.44068 * 23 14 13 43 43 H 1.08998 * 113.47136 * 217.87680 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 1 1.3451 1.9993 -0.5138 5 6 3.3589 1.2631 -0.7212 6 6 3.1416 0.9234 -2.1733 7 8 2.0187 0.7334 -2.5901 8 7 4.1952 0.8298 -3.0085 9 6 3.9776 0.6092 -4.4403 10 6 3.4640 -0.7951 -4.7646 11 6 4.2777 -1.8287 -3.9832 12 8 3.8784 -3.1439 -4.3744 13 6 3.2090 1.7378 -5.1415 14 7 4.4987 2.4099 -5.3601 15 6 4.9225 3.7023 -5.5194 16 1 4.2279 4.5186 -5.3869 17 6 6.2450 3.9631 -5.8513 18 7 7.0611 2.9696 -6.1326 19 14 6.8681 5.7236 -5.8912 20 1 6.7934 6.2438 -7.2801 21 1 6.0291 6.5660 -5.0014 22 1 8.2772 5.7608 -5.4239 23 6 5.1321 1.0829 -5.3386 24 6 2.2177 1.7713 1.4425 25 9 2.7874 3.0491 1.4424 26 9 0.9846 1.8099 2.1020 27 9 3.0716 0.8806 2.1020 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.9931 0.5049 -0.2617 32 1 3.8428 2.2368 -0.6443 33 1 5.0976 0.9086 -2.6616 34 1 2.4137 -0.8718 -4.4836 35 1 3.5690 -0.9826 -5.8332 36 1 5.3380 -1.6927 -4.1959 37 1 4.1017 -1.6980 -2.9155 38 1 4.3538 -3.8514 -3.9177 39 1 2.5410 2.2859 -4.4771 40 1 2.7213 1.4240 -6.0644 41 1 7.9862 3.1516 -6.3606 42 1 5.1518 0.5954 -6.3134 43 1 6.1024 1.0729 -4.8422 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700496406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:06 Heat of formation + Delta-G solvation = -248.273767 kcal Electronic energy + Delta-G solvation = -31721.339389 eV Core-core repulsion = 26774.088243 eV Total energy + Delta-G solvation = -4947.251146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -51.18260 -48.72605 -48.63264 -41.58732 -39.87375 -38.61930 -37.68674 -35.14434 -34.00586 -33.32342 -31.97986 -29.05481 -28.16523 -27.46610 -26.60625 -25.22789 -23.73359 -22.79341 -21.76062 -20.26677 -19.77472 -19.65519 -19.10014 -18.79188 -18.28171 -17.78510 -17.47532 -16.90708 -16.56746 -16.22641 -16.20595 -15.89469 -15.59079 -15.47809 -15.36767 -15.34730 -15.09739 -14.95868 -14.92244 -14.79587 -14.77134 -14.42120 -14.17317 -13.49739 -13.28899 -13.21454 -13.08467 -12.85856 -12.79683 -12.78446 -12.56975 -12.28903 -12.15748 -11.86431 -11.68344 -11.18353 -11.02126 -10.92624 -10.82980 -10.61300 -9.95034 -8.93167 -7.93497 -5.24693 1.47561 1.48441 1.48981 1.57567 1.71630 2.15137 2.29759 2.46638 2.66868 2.89199 3.20601 3.23159 3.30038 3.42267 3.60365 3.63102 3.79556 4.01845 4.21977 4.35322 4.36382 4.40181 4.43967 4.52246 4.57206 4.60750 4.73514 4.77893 4.84252 4.90692 4.99527 5.13361 5.17083 5.26422 5.44588 5.75719 5.79492 5.88188 6.64699 6.90119 6.95209 7.32891 7.57532 8.57670 9.24921 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010085 B = 0.003930 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.759492 B = 7122.327338 C = 9060.194132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.362 6.362 3 C 0.071 3.929 4 H 0.115 0.885 5 C -0.142 4.142 6 C 0.525 3.475 7 O -0.558 6.558 8 N -0.687 5.687 9 C 0.152 3.848 10 C -0.102 4.102 11 C 0.092 3.908 12 O -0.592 6.592 13 C 0.118 3.882 14 N -0.628 5.628 15 C -0.228 4.228 16 H 0.078 0.922 17 C -0.054 4.054 18 N -0.948 5.948 19 Si 0.975 3.025 20 H -0.291 1.291 21 H -0.270 1.270 22 H -0.290 1.290 23 C 0.170 3.830 24 C 0.435 3.565 25 F -0.179 7.179 26 F -0.184 7.184 27 F -0.178 7.178 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.106 0.894 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.411 0.589 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.396 0.604 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.251 0.749 42 H 0.031 0.969 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.883 -8.171 15.702 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.280 6.280 3 C 0.010 3.990 4 H 0.132 0.868 5 C -0.181 4.181 6 C 0.312 3.688 7 O -0.437 6.437 8 N -0.338 5.338 9 C 0.063 3.937 10 C -0.142 4.142 11 C 0.015 3.985 12 O -0.400 6.400 13 C -0.008 4.008 14 N -0.354 5.354 15 C -0.356 4.356 16 H 0.096 0.904 17 C -0.248 4.248 18 N -0.596 5.596 19 Si 0.803 3.197 20 H -0.218 1.218 21 H -0.195 1.195 22 H -0.217 1.217 23 C 0.044 3.956 24 C 0.381 3.619 25 F -0.161 7.161 26 F -0.165 7.165 27 F -0.159 7.159 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.124 0.876 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.248 0.752 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.246 0.754 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.748 -7.829 14.996 19.045 hybrid contribution 1.079 1.103 0.222 1.559 sum -7.669 -6.727 15.218 18.321 Atomic orbital electron populations 1.23168 0.78583 1.04713 1.01133 1.88008 1.22382 1.23698 1.93894 1.22903 0.98549 0.89522 0.88019 0.86753 1.21834 0.96610 1.07767 0.91931 1.20367 0.84455 0.76052 0.87881 1.90670 1.24104 1.50473 1.78411 1.45327 1.09775 1.72878 1.05805 1.21499 0.98209 0.92590 0.81411 1.21479 1.00382 0.91512 1.00805 1.21932 0.97355 0.81817 0.97433 1.86417 1.67656 1.16363 1.69600 1.22744 0.89889 0.91658 0.96538 1.45899 1.03737 1.01269 1.84492 1.19205 0.94233 0.82008 1.40170 0.90439 1.25508 0.96799 1.01124 1.01407 1.69971 1.05162 1.31228 1.53211 0.85128 0.77363 0.79727 0.77468 1.21834 1.19496 1.21666 1.22236 0.94660 0.83985 0.94739 1.21425 0.73985 0.75308 0.91215 1.93209 1.85136 1.40784 1.96947 1.93153 1.43518 1.96203 1.83627 1.93189 1.71055 1.68228 1.83455 0.92320 0.93172 0.87613 0.84834 0.84691 0.75250 0.91509 0.90939 0.92941 0.93257 0.75433 0.94088 0.94040 0.94029 0.95089 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.70 113.37 1.21 1.58 16 2 O -0.36 -8.28 9.51 -135.18 -1.29 -9.56 16 3 C 0.07 1.49 1.72 30.59 0.05 1.54 16 4 H 0.11 2.40 7.60 -2.39 -0.02 2.38 16 5 C -0.14 -2.88 5.17 29.85 0.15 -2.72 16 6 C 0.53 14.73 7.21 87.66 0.63 15.36 16 7 O -0.56 -18.75 13.70 10.78 0.15 -18.60 16 8 N -0.69 -20.21 4.31 -421.96 -1.82 -22.03 16 9 C 0.15 5.30 0.76 4.17 0.00 5.30 16 10 C -0.10 -3.23 5.03 30.59 0.15 -3.07 16 11 C 0.09 2.41 6.65 71.98 0.48 2.89 16 12 O -0.59 -14.91 13.66 -148.98 -2.04 -16.94 16 13 C 0.12 4.93 7.63 83.18 0.63 5.57 16 14 N -0.63 -30.90 3.76 -737.84 -2.78 -33.68 16 15 C -0.23 -12.37 10.73 84.03 0.90 -11.47 16 16 H 0.08 4.13 7.84 -2.91 -0.02 4.10 16 17 C -0.05 -2.96 5.50 84.86 0.47 -2.49 16 18 N -0.95 -54.03 11.81 21.65 0.26 -53.77 16 19 Si 0.97 44.02 29.56 68.60 2.03 46.04 16 20 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 23 C 0.17 7.39 6.59 83.27 0.55 7.94 16 24 C 0.44 8.71 2.85 71.98 0.21 8.92 16 25 F -0.18 -3.68 16.71 44.97 0.75 -2.93 16 26 F -0.18 -3.74 15.50 44.97 0.70 -3.04 16 27 F -0.18 -3.71 16.83 44.97 0.76 -2.95 16 28 H 0.06 0.95 6.49 -2.39 -0.02 0.93 16 29 H 0.05 1.00 8.08 -2.39 -0.02 0.98 16 30 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.13 2.17 7.94 -2.39 -0.02 2.15 16 32 H 0.14 2.37 7.66 -2.39 -0.02 2.36 16 33 H 0.41 10.69 8.77 -92.71 -0.81 9.88 16 34 H 0.07 2.27 7.46 -2.39 -0.02 2.26 16 35 H 0.07 2.36 7.87 -2.39 -0.02 2.34 16 36 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.05 1.22 7.67 -2.39 -0.02 1.20 16 38 H 0.40 5.84 9.12 -74.05 -0.68 5.16 16 39 H 0.04 1.76 7.27 -2.39 -0.02 1.74 16 40 H 0.04 1.73 8.11 -2.39 -0.02 1.71 16 41 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 42 H 0.03 1.43 7.92 -2.38 -0.02 1.41 16 43 H 0.05 2.29 7.58 -2.39 -0.02 2.27 16 Total: -1.00 -68.68 369.21 1.75 -66.94 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -0.42 Total: 21.19 kcal Atomic # 6 Polarization: 23.89 SS G_CDS: 5.44 Total: 29.33 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -4.34 Total: -109.48 kcal Atomic # 8 Polarization: -41.93 SS G_CDS: -3.17 Total: -45.11 kcal Atomic # 9 Polarization: -11.13 SS G_CDS: 2.21 Total: -8.92 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -68.68 1.75 -66.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700496406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.337 kcal (2) G-P(sol) polarization free energy of solvation -68.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds