Wall clock time and date at job start Sat Apr 11 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99666 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00326 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99885 * 3 2 1 7 7 C 1.38951 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99421 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00419 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00123 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00229 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99772 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46994 * 179.97438 * 12 10 9 14 14 C 1.46902 * 111.00336 * 179.97438 * 13 12 10 15 15 H 1.09005 * 112.84457 * 25.33625 * 14 13 12 16 16 C 1.53777 * 113.61690 * 156.53028 * 14 13 12 17 17 C 1.53777 * 87.07937 * 139.98386 * 16 14 13 18 18 H 1.08995 * 113.61464 * 89.12304 * 17 16 14 19 19 C 1.53007 * 113.61304 * 219.93373 * 17 16 14 20 20 N 1.46495 * 109.47235 * 185.00255 * 19 17 16 21 21 C 1.34774 * 119.99750 * 180.02562 * 20 19 17 22 22 O 1.21276 * 120.00464 * 359.97438 * 21 20 19 23 23 C 1.50708 * 119.99701 * 179.97438 * 21 20 19 24 24 H 1.08998 * 110.50347 * 40.69515 * 23 21 20 25 25 C 1.54094 * 110.56323 * 277.95525 * 23 21 20 26 26 O 1.45701 * 104.00752 * 241.42916 * 25 23 21 27 27 C 1.33776 * 109.47789 * 359.97438 * 26 25 23 28 28 O 1.21510 * 123.07214 * 180.02562 * 27 26 25 29 29 N 1.34324 * 113.90159 * 359.92153 * 27 26 25 30 30 C 1.53776 * 113.61479 * 254.14183 * 14 13 12 31 31 H 0.96996 * 120.00340 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00144 * 0.02562 * 9 7 2 33 33 H 1.08997 * 109.47517 * 299.99470 * 12 10 9 34 34 H 1.09007 * 109.47528 * 60.00096 * 12 10 9 35 35 H 1.00897 * 111.00085 * 303.95661 * 13 12 10 36 36 H 1.09004 * 113.61233 * 254.53181 * 16 14 13 37 37 H 1.09003 * 113.61395 * 25.42978 * 16 14 13 38 38 H 1.08998 * 109.46879 * 305.00364 * 19 17 16 39 39 H 1.08996 * 109.46926 * 64.99960 * 19 17 16 40 40 H 0.96998 * 119.99924 * 359.97438 * 20 19 17 41 41 H 1.09001 * 110.52055 * 0.05879 * 25 23 21 42 42 H 1.09001 * 110.51789 * 122.65831 * 25 23 21 43 43 H 0.97003 * 125.73653 * 180.11576 * 29 27 26 44 44 H 1.09004 * 113.61666 * 334.55894 * 30 14 13 45 45 H 1.08999 * 113.61760 * 105.47007 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 1.2831 2.7464 -0.0006 5 1 3.1018 1.6965 1.2124 6 1 3.1018 1.6964 -1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5579 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1984 -5.9795 0.0027 14 6 1.4982 -7.2709 0.0039 15 1 0.4982 -7.2105 -0.4257 16 6 2.3405 -8.4289 -0.5567 17 6 1.7500 -9.2979 0.5662 18 1 0.8185 -9.7926 0.2914 19 6 2.7644 -10.2516 1.2009 20 7 2.0837 -11.1142 2.1697 21 6 2.7832 -12.0392 2.8563 22 8 3.9760 -12.1579 2.6718 23 6 2.0832 -12.9263 3.8535 24 1 1.1158 -13.2464 3.4666 25 6 1.9131 -12.1974 5.2005 26 8 2.6639 -13.0172 6.1423 27 6 3.1989 -14.0603 5.4980 28 8 3.8763 -14.9044 6.0503 29 7 2.9177 -14.0914 4.1849 30 6 1.5435 -7.9949 1.3597 31 1 -0.4850 0.8400 0.0004 32 1 0.3534 -2.3907 -0.0002 33 1 0.6169 -4.9202 0.8919 34 1 0.6174 -4.9213 -0.8881 35 1 2.8333 -5.9128 -0.7787 36 1 2.0399 -8.7435 -1.5562 37 1 3.4152 -8.2704 -0.4671 38 1 3.2203 -10.8661 0.4246 39 1 3.5374 -9.6745 1.7082 40 1 1.1298 -11.0191 2.3176 41 1 2.3342 -11.1934 5.1475 42 1 0.8608 -12.1550 5.4818 43 1 3.2152 -14.7688 3.5576 44 1 2.3999 -7.7177 1.9744 45 1 0.6005 -7.9598 1.9053 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707061725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:16 Heat of formation + Delta-G solvation = -115.961181 kcal Electronic energy + Delta-G solvation = -28097.658379 eV Core-core repulsion = 23730.294228 eV Total energy + Delta-G solvation = -4367.364151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.31454 -40.22590 -39.30427 -38.09992 -37.59845 -35.47816 -35.14785 -34.12964 -33.32789 -31.24484 -30.74740 -28.36373 -26.51859 -25.88994 -25.01302 -24.00227 -22.93441 -21.76859 -21.36667 -19.84655 -19.17513 -18.77683 -18.46840 -17.90797 -17.64139 -16.75602 -16.52617 -16.12214 -15.75502 -15.70320 -15.25185 -15.00605 -14.81980 -14.65627 -14.48942 -14.36719 -14.07909 -13.89792 -13.85856 -13.43600 -13.02498 -12.63114 -12.53364 -12.33754 -11.73813 -11.61166 -11.56510 -11.46726 -11.21039 -11.09220 -11.06159 -10.96167 -10.73390 -10.49165 -10.46287 -10.23784 -9.84599 -9.63577 -9.53028 -8.49135 -8.13060 -7.99258 -6.44733 -3.85656 1.79113 1.94313 2.20191 2.48179 2.99146 3.18053 3.23940 3.28390 3.38138 3.80172 3.87404 3.94506 4.04182 4.21791 4.24658 4.36808 4.43028 4.54743 4.62769 4.63652 4.75595 4.86627 5.11832 5.15883 5.22631 5.32585 5.47385 5.55192 5.65441 5.71933 5.76832 5.83139 5.90245 6.06046 6.15006 6.18029 6.29416 6.63395 6.81455 7.22083 7.48772 7.52178 7.56864 7.60336 8.03039 8.58008 9.14812 9.50955 10.02426 10.72852 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022873 B = 0.001497 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.877045 B =18700.129146 C =19245.216816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.657 5.657 14 C 0.059 3.941 15 H 0.070 0.930 16 C -0.131 4.131 17 C -0.126 4.126 18 H 0.095 0.905 19 C 0.130 3.870 20 N -0.719 5.719 21 C 0.499 3.501 22 O -0.516 6.516 23 C 0.076 3.924 24 H 0.128 0.872 25 C 0.054 3.946 26 O -0.320 6.320 27 C 0.651 3.349 28 O -0.515 6.515 29 N -0.712 5.712 30 C -0.121 4.121 31 H 0.272 0.728 32 H 0.392 0.608 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.351 0.649 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.403 0.597 41 H 0.112 0.888 42 H 0.122 0.878 43 H 0.441 0.559 44 H 0.093 0.907 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.375 -25.811 2.779 26.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.289 5.289 14 C -0.052 4.052 15 H 0.088 0.912 16 C -0.169 4.169 17 C -0.145 4.145 18 H 0.113 0.887 19 C 0.007 3.993 20 N -0.371 5.371 21 C 0.281 3.719 22 O -0.391 6.391 23 C -0.034 4.034 24 H 0.145 0.855 25 C -0.022 4.022 26 O -0.230 6.230 27 C 0.404 3.596 28 O -0.398 6.398 29 N -0.385 5.385 30 C -0.160 4.160 31 H 0.082 0.918 32 H 0.225 0.775 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.171 0.829 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.238 0.762 41 H 0.130 0.870 42 H 0.140 0.860 43 H 0.285 0.715 44 H 0.112 0.888 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.386 -25.953 3.982 26.621 hybrid contribution -1.112 0.779 -1.426 1.969 sum -5.498 -25.174 2.556 25.894 Atomic orbital electron populations 1.69600 1.05936 1.28285 1.50512 1.25260 0.95637 0.99727 0.97252 0.85910 0.78763 0.80414 0.79098 1.20968 1.19867 1.19918 1.19662 0.93369 0.82266 1.47749 0.87968 1.41859 1.09175 1.04619 1.64325 1.19831 0.88406 0.84753 0.84547 1.90526 1.13772 1.87066 1.55428 1.21725 0.94409 0.91075 1.01021 1.60226 1.18342 0.99466 1.50875 1.22970 0.96596 0.88609 0.96982 0.91168 1.23180 1.01191 0.95161 0.97414 1.22690 0.98785 0.94699 0.98327 0.88686 1.21488 0.95103 0.91702 0.91004 1.45987 1.12565 1.36532 1.42057 1.20566 0.87911 0.81398 0.82019 1.90811 1.14477 1.68676 1.65101 1.22308 0.96607 0.87979 0.96531 0.85480 1.24276 0.99158 0.95388 0.83331 1.87329 1.64379 1.36351 1.34952 1.18509 0.78776 0.81235 0.81103 1.91107 1.40233 1.38296 1.70178 1.45732 1.55919 1.27324 1.09530 1.23237 1.02656 0.93224 0.96851 0.91816 0.77484 0.89698 0.93928 0.82862 0.91204 0.88743 0.91123 0.90531 0.76211 0.86982 0.85961 0.71510 0.88802 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.29 9.68 -14.94 -0.14 -8.44 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 10 C 0.44 10.09 7.82 -10.99 -0.09 10.00 16 11 O -0.58 -15.57 15.78 5.55 0.09 -15.49 16 12 C 0.05 0.83 6.02 -4.97 -0.03 0.80 16 13 N -0.66 -9.62 6.18 -107.13 -0.66 -10.28 16 14 C 0.06 0.59 4.12 -66.90 -0.28 0.31 16 15 H 0.07 0.66 7.88 -51.93 -0.41 0.25 16 16 C -0.13 -1.02 7.23 -25.92 -0.19 -1.20 16 17 C -0.13 -0.71 3.75 -89.72 -0.34 -1.05 16 18 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 19 C 0.13 0.81 5.52 -4.04 -0.02 0.79 16 20 N -0.72 -2.89 5.56 -60.29 -0.33 -3.22 16 21 C 0.50 3.08 6.94 -10.98 -0.08 3.00 16 22 O -0.52 -5.88 16.58 5.56 0.09 -5.79 16 23 C 0.08 0.25 4.16 -68.18 -0.28 -0.03 16 24 H 0.13 -0.10 8.14 -51.93 -0.42 -0.52 16 25 C 0.05 0.18 7.87 37.73 0.30 0.47 16 26 O -0.32 -2.76 11.09 -37.84 -0.42 -3.18 16 27 C 0.65 6.64 9.16 53.85 0.49 7.13 16 28 O -0.51 -7.44 18.04 -19.12 -0.34 -7.78 16 29 N -0.71 -4.54 5.67 -59.26 -0.34 -4.88 16 30 C -0.12 -0.99 7.45 -25.83 -0.19 -1.18 16 31 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.04 0.63 8.13 -51.93 -0.42 0.21 16 35 H 0.35 5.40 8.26 -39.29 -0.32 5.07 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.64 7.86 -51.93 -0.41 0.23 16 40 H 0.40 0.31 8.47 -40.82 -0.35 -0.04 16 41 H 0.11 0.34 7.72 -51.93 -0.40 -0.06 16 42 H 0.12 -0.05 8.14 -51.93 -0.42 -0.47 16 43 H 0.44 2.30 8.96 -40.82 -0.37 1.94 16 44 H 0.09 0.95 7.91 -51.93 -0.41 0.54 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 386.98 15.07 5.83 5.83 Total: -1.00 -38.18 386.98 -7.68 -45.86 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.30 Total: 9.47 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: -0.94 Total: 11.13 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.67 Total: -55.82 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.58 Total: -32.24 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.18 -7.68 -45.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707061725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.101 kcal (2) G-P(sol) polarization free energy of solvation -38.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds