Wall clock time and date at job start Sat Apr 11 2020 06:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99666 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00326 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99885 * 3 2 1 7 7 C 1.38951 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99421 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00419 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00123 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00229 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99772 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46994 * 179.97438 * 12 10 9 14 14 C 1.46902 * 111.00336 * 179.97438 * 13 12 10 15 15 H 1.09005 * 112.84457 * 25.33625 * 14 13 12 16 16 C 1.53777 * 113.61690 * 156.53028 * 14 13 12 17 17 C 1.53777 * 87.07937 * 139.98386 * 16 14 13 18 18 H 1.08995 * 113.61464 * 89.12304 * 17 16 14 19 19 C 1.53007 * 113.61304 * 219.93373 * 17 16 14 20 20 N 1.46495 * 109.47235 * 185.00255 * 19 17 16 21 21 C 1.34774 * 119.99750 * 180.02562 * 20 19 17 22 22 O 1.21276 * 120.00464 * 359.97438 * 21 20 19 23 23 C 1.50708 * 119.99701 * 179.97438 * 21 20 19 24 24 H 1.08998 * 110.50347 * 40.69515 * 23 21 20 25 25 C 1.54094 * 110.56323 * 277.95525 * 23 21 20 26 26 O 1.45701 * 104.00752 * 241.42916 * 25 23 21 27 27 C 1.33776 * 109.47789 * 359.97438 * 26 25 23 28 28 O 1.21510 * 123.07214 * 180.02562 * 27 26 25 29 29 N 1.34324 * 113.90159 * 359.92153 * 27 26 25 30 30 C 1.53776 * 113.61479 * 254.14183 * 14 13 12 31 31 H 0.96996 * 120.00340 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00144 * 0.02562 * 9 7 2 33 33 H 1.08997 * 109.47517 * 299.99470 * 12 10 9 34 34 H 1.09007 * 109.47528 * 60.00096 * 12 10 9 35 35 H 1.00897 * 111.00085 * 303.95661 * 13 12 10 36 36 H 1.09004 * 113.61233 * 254.53181 * 16 14 13 37 37 H 1.09003 * 113.61395 * 25.42978 * 16 14 13 38 38 H 1.08998 * 109.46879 * 305.00364 * 19 17 16 39 39 H 1.08996 * 109.46926 * 64.99960 * 19 17 16 40 40 H 0.96998 * 119.99924 * 359.97438 * 20 19 17 41 41 H 1.09001 * 110.52055 * 0.05879 * 25 23 21 42 42 H 1.09001 * 110.51789 * 122.65831 * 25 23 21 43 43 H 0.97003 * 125.73653 * 180.11576 * 29 27 26 44 44 H 1.09004 * 113.61666 * 334.55894 * 30 14 13 45 45 H 1.08999 * 113.61760 * 105.47007 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 1.2831 2.7464 -0.0006 5 1 3.1018 1.6965 1.2124 6 1 3.1018 1.6964 -1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5579 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1984 -5.9795 0.0027 14 6 1.4982 -7.2709 0.0039 15 1 0.4982 -7.2105 -0.4257 16 6 2.3405 -8.4289 -0.5567 17 6 1.7500 -9.2979 0.5662 18 1 0.8185 -9.7926 0.2914 19 6 2.7644 -10.2516 1.2009 20 7 2.0837 -11.1142 2.1697 21 6 2.7832 -12.0392 2.8563 22 8 3.9760 -12.1579 2.6718 23 6 2.0832 -12.9263 3.8535 24 1 1.1158 -13.2464 3.4666 25 6 1.9131 -12.1974 5.2005 26 8 2.6639 -13.0172 6.1423 27 6 3.1989 -14.0603 5.4980 28 8 3.8763 -14.9044 6.0503 29 7 2.9177 -14.0914 4.1849 30 6 1.5435 -7.9949 1.3597 31 1 -0.4850 0.8400 0.0004 32 1 0.3534 -2.3907 -0.0002 33 1 0.6169 -4.9202 0.8919 34 1 0.6174 -4.9213 -0.8881 35 1 2.8333 -5.9128 -0.7787 36 1 2.0399 -8.7435 -1.5562 37 1 3.4152 -8.2704 -0.4671 38 1 3.2203 -10.8661 0.4246 39 1 3.5374 -9.6745 1.7082 40 1 1.1298 -11.0191 2.3176 41 1 2.3342 -11.1934 5.1475 42 1 0.8608 -12.1550 5.4818 43 1 3.2152 -14.7688 3.5576 44 1 2.3999 -7.7177 1.9744 45 1 0.6005 -7.9598 1.9053 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707061725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:14 Heat of formation + Delta-G solvation = -151.172672 kcal Electronic energy + Delta-G solvation = -28099.185264 eV Core-core repulsion = 23730.294228 eV Total energy + Delta-G solvation = -4368.891036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.86028 -40.84956 -40.25537 -39.64437 -38.37558 -36.28268 -35.87706 -35.70666 -34.48008 -33.23425 -31.24848 -29.17554 -27.81011 -26.57808 -25.93627 -25.19082 -23.56074 -22.48876 -21.86979 -21.15960 -20.33759 -19.86899 -19.32367 -18.92937 -18.21901 -17.78526 -17.30526 -17.03163 -16.82727 -16.48153 -16.34525 -16.22521 -15.84221 -15.54884 -15.40877 -15.28917 -15.02799 -14.94950 -14.56456 -14.50257 -14.02945 -13.57179 -13.49959 -13.30845 -13.25297 -12.99056 -12.75181 -12.44299 -12.38270 -12.12863 -12.06528 -11.98898 -11.76367 -11.63043 -11.50438 -11.41248 -11.11197 -10.37637 -10.30001 -10.14015 -10.01314 -9.26046 -8.46600 -5.95283 1.30516 1.38505 1.39841 1.42094 1.52648 1.61256 2.00537 2.06281 2.29627 2.59339 3.00070 3.09245 3.20897 3.40711 3.51731 3.65990 3.74998 3.83166 3.96173 4.03387 4.07530 4.28951 4.38406 4.44629 4.48817 4.49676 4.52297 4.62449 4.77919 4.89069 4.96771 5.02839 5.18186 5.28471 5.39062 5.40834 5.56623 5.64996 5.95381 6.06268 6.23063 6.45821 6.46437 6.60971 6.88546 7.13014 7.14244 7.56997 8.12768 8.70380 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022873 B = 0.001497 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.877045 B =18700.129146 C =19245.216816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.992 3.008 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.077 0.923 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.626 6.626 12 C 0.067 3.933 13 N -0.675 5.675 14 C 0.049 3.951 15 H 0.088 0.912 16 C -0.132 4.132 17 C -0.098 4.098 18 H 0.130 0.870 19 C 0.133 3.867 20 N -0.698 5.698 21 C 0.498 3.502 22 O -0.577 6.577 23 C 0.085 3.915 24 H 0.185 0.815 25 C 0.048 3.952 26 O -0.341 6.341 27 C 0.647 3.353 28 O -0.573 6.573 29 N -0.703 5.703 30 C -0.121 4.121 31 H 0.278 0.722 32 H 0.397 0.603 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.342 0.658 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.425 0.575 41 H 0.112 0.888 42 H 0.171 0.829 43 H 0.445 0.555 44 H 0.067 0.933 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.529 -26.367 2.251 28.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.467 4.467 8 H 0.095 0.905 9 N -0.210 5.210 10 C 0.222 3.778 11 O -0.513 6.513 12 C -0.065 4.065 13 N -0.308 5.308 14 C -0.061 4.061 15 H 0.106 0.894 16 C -0.170 4.170 17 C -0.117 4.117 18 H 0.148 0.852 19 C 0.009 3.991 20 N -0.351 5.351 21 C 0.282 3.718 22 O -0.455 6.455 23 C -0.024 4.024 24 H 0.202 0.798 25 C -0.026 4.026 26 O -0.251 6.251 27 C 0.400 3.600 28 O -0.461 6.461 29 N -0.375 5.375 30 C -0.159 4.159 31 H 0.087 0.913 32 H 0.231 0.769 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.161 0.839 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.263 0.737 41 H 0.130 0.870 42 H 0.189 0.811 43 H 0.290 0.710 44 H 0.085 0.915 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.649 -26.491 3.430 27.786 hybrid contribution -0.149 0.995 -1.310 1.652 sum -7.798 -25.497 2.120 26.747 Atomic orbital electron populations 1.69654 1.06730 1.29360 1.50180 1.26003 0.96548 1.02294 0.96230 0.85010 0.77794 0.76786 0.78877 1.19379 1.19887 1.19767 1.19625 0.92688 0.84182 1.50157 0.90492 1.41929 1.09329 1.04697 1.65045 1.21022 0.88293 0.86351 0.82095 1.90493 1.16056 1.88028 1.56733 1.21575 0.94050 0.87997 1.02903 1.60266 1.18736 1.00889 1.50866 1.23245 0.97345 0.86654 0.98823 0.89374 1.23163 0.99999 0.94836 0.99033 1.22565 0.99489 0.93403 0.96197 0.85215 1.21292 0.95004 0.91722 0.91045 1.45776 1.13467 1.35150 1.40743 1.21099 0.87233 0.81456 0.82024 1.90802 1.17212 1.70414 1.67113 1.22657 0.97651 0.86244 0.95860 0.79765 1.24799 1.01163 0.94430 0.82234 1.87284 1.64857 1.36289 1.36637 1.18701 0.78336 0.81032 0.81960 1.91046 1.42821 1.40595 1.71612 1.45742 1.55447 1.28021 1.08289 1.23185 1.02554 0.94154 0.96021 0.91268 0.76912 0.87887 0.91516 0.83854 0.89693 0.90603 0.91730 0.93252 0.73676 0.86988 0.81112 0.71043 0.91451 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.61 13.05 21.66 0.28 -48.32 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 3 Si 0.99 42.44 29.55 68.60 2.03 44.47 16 4 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.34 -18.98 9.68 84.04 0.81 -18.17 16 8 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 9 N -0.57 -28.82 5.29 -306.99 -1.62 -30.44 16 10 C 0.43 20.20 7.82 87.66 0.69 20.88 16 11 O -0.63 -34.47 15.78 -3.07 -0.05 -34.52 16 12 C 0.07 2.13 6.02 85.56 0.52 2.65 16 13 N -0.68 -19.26 6.18 -492.85 -3.04 -22.30 16 14 C 0.05 0.85 4.12 45.44 0.19 1.04 16 15 H 0.09 1.29 7.88 -2.38 -0.02 1.27 16 16 C -0.13 -1.78 7.23 31.12 0.22 -1.56 16 17 C -0.10 -0.78 3.75 -10.21 -0.04 -0.82 16 18 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 19 C 0.13 1.43 5.52 86.38 0.48 1.91 16 20 N -0.70 -3.41 5.56 -463.06 -2.57 -5.98 16 21 C 0.50 5.11 6.94 87.66 0.61 5.72 16 22 O -0.58 -13.12 16.58 -3.02 -0.05 -13.17 16 23 C 0.08 0.28 4.16 44.50 0.19 0.47 16 24 H 0.19 -1.39 8.14 -2.39 -0.02 -1.41 16 25 C 0.05 0.16 7.87 72.35 0.57 0.73 16 26 O -0.34 -5.59 11.09 -47.36 -0.53 -6.12 16 27 C 0.65 13.26 9.16 129.86 1.19 14.45 16 28 O -0.57 -17.48 18.04 19.65 0.35 -17.13 16 29 N -0.70 -8.14 5.67 -572.77 -3.25 -11.39 16 30 C -0.12 -1.65 7.45 31.18 0.23 -1.42 16 31 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 32 H 0.40 18.77 7.90 -92.71 -0.73 18.04 16 33 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.07 1.82 8.13 -2.38 -0.02 1.80 16 35 H 0.34 10.60 8.26 -89.70 -0.74 9.86 16 36 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 38 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.05 0.83 7.86 -2.39 -0.02 0.81 16 40 H 0.42 -1.51 8.47 -92.71 -0.79 -2.29 16 41 H 0.11 0.40 7.72 -2.39 -0.02 0.38 16 42 H 0.17 -1.05 8.14 -2.39 -0.02 -1.07 16 43 H 0.44 4.34 8.96 -92.71 -0.83 3.51 16 44 H 0.07 1.32 7.91 -2.38 -0.02 1.30 16 45 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -89.85 386.98 -4.34 -94.19 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: -2.01 Total: 24.93 kcal Atomic # 6 Polarization: 19.66 SS G_CDS: 6.12 Total: 25.78 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -10.20 Total: -118.44 kcal Atomic # 8 Polarization: -70.66 SS G_CDS: -0.27 Total: -70.93 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -89.85 -4.34 -94.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707061725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.981 kcal (2) G-P(sol) polarization free energy of solvation -89.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds