Wall clock time and date at job start Sat Apr 11 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30413 * 125.98053 * 2 1 4 4 N 1.39924 * 108.96183 * 180.26602 * 3 2 1 5 5 C 1.46501 * 125.74997 * 179.71316 * 4 3 2 6 6 C 1.34348 * 108.50142 * 359.70261 * 4 3 2 7 7 Cl 1.73597 * 126.32026 * 179.97438 * 6 4 3 8 8 C 1.38283 * 107.36298 * 0.02562 * 6 4 3 9 9 C 1.47294 * 126.43679 * 179.97438 * 8 6 4 10 10 O 1.21611 * 120.00166 * 90.02406 * 9 8 6 11 11 N 1.34783 * 119.99749 * 270.02331 * 9 8 6 12 12 C 1.46497 * 119.99744 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46878 * 180.02562 * 12 11 9 14 14 C 1.53011 * 109.46780 * 180.02562 * 13 12 11 15 15 N 1.46501 * 109.46850 * 180.02562 * 14 13 12 16 16 C 1.36943 * 119.99717 * 269.99987 * 15 14 13 17 17 H 1.08004 * 120.00031 * 141.42443 * 16 15 14 18 18 C 1.38817 * 119.99988 * 321.41829 * 16 15 14 19 19 N 1.31617 * 119.99620 * 157.77800 * 18 16 15 20 20 Si 1.86800 * 119.99823 * 337.77946 * 18 16 15 21 21 H 1.48496 * 109.47219 * 95.68041 * 20 18 16 22 22 H 1.48502 * 109.47011 * 215.67794 * 20 18 16 23 23 H 1.48496 * 109.47137 * 335.68005 * 20 18 16 24 24 C 1.46493 * 120.00309 * 89.99718 * 15 14 13 25 25 C 1.53004 * 117.50073 * 183.18933 * 24 15 14 26 26 C 1.53001 * 117.49918 * 114.53197 * 24 15 14 27 27 H 1.08999 * 109.46895 * 270.21852 * 1 2 3 28 28 H 1.09001 * 109.46883 * 30.22236 * 1 2 3 29 29 H 1.08997 * 109.47440 * 150.21543 * 1 2 3 30 30 H 1.09001 * 109.47211 * 269.99390 * 5 4 3 31 31 H 1.08996 * 109.47144 * 29.99529 * 5 4 3 32 32 H 1.08998 * 109.47204 * 149.99353 * 5 4 3 33 33 H 0.96991 * 120.00193 * 359.97438 * 11 9 8 34 34 H 1.08999 * 109.46933 * 59.99862 * 12 11 9 35 35 H 1.09001 * 109.47200 * 299.99914 * 12 11 9 36 36 H 1.08999 * 109.47454 * 60.00178 * 13 12 11 37 37 H 1.08995 * 109.47568 * 299.99422 * 13 12 11 38 38 H 1.08992 * 109.46979 * 299.99719 * 14 13 12 39 39 H 1.08999 * 109.47048 * 59.99849 * 14 13 12 40 40 H 0.97000 * 119.99601 * 180.02562 * 19 18 16 41 41 H 1.08998 * 115.55363 * 328.85915 * 24 15 14 42 42 H 1.08996 * 117.49850 * 0.02562 * 25 24 15 43 43 H 1.09004 * 117.49826 * 145.02124 * 25 24 15 44 44 H 1.09004 * 117.49680 * 214.98160 * 26 24 15 45 45 H 1.09009 * 117.49852 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2731 1.0553 0.0000 4 7 3.6111 0.6458 -0.0061 5 6 4.7775 1.5322 -0.0141 6 6 3.6459 -0.6972 -0.0033 7 17 5.0707 -1.6889 -0.0093 8 6 2.3372 -1.1439 0.0040 9 6 1.8921 -2.5480 0.0087 10 8 1.7131 -3.1256 1.0638 11 7 1.6831 -3.1926 -1.1564 12 6 1.2398 -4.5889 -1.1516 13 6 1.0798 -5.0780 -2.5925 14 6 0.6163 -6.5362 -2.5875 15 7 0.4637 -7.0047 -3.9672 16 6 -0.7379 -6.8643 -4.6089 17 1 -0.7634 -6.5987 -5.6555 18 6 -1.9232 -7.0636 -3.9144 19 7 -3.0419 -6.5280 -4.3548 20 14 -1.9303 -8.0918 -2.3549 21 1 -1.8183 -7.1996 -1.1732 22 1 -3.1977 -8.8617 -2.2754 23 1 -0.7808 -9.0316 -2.3763 24 6 1.5964 -7.6233 -4.6602 25 6 1.3961 -8.0238 -6.1233 26 6 1.4720 -9.1007 -5.0381 27 1 -0.3633 0.0039 1.0277 28 1 -0.3633 0.8880 -0.5173 29 1 -0.3634 -0.8919 -0.5105 30 1 5.0615 1.7498 -1.0437 31 1 4.5310 2.4617 0.4991 32 1 5.6079 1.0445 0.4965 33 1 1.8254 -2.7318 -1.9979 34 1 0.2839 -4.6648 -0.6335 35 1 1.9804 -5.2035 -0.6398 36 1 2.0360 -5.0021 -3.1103 37 1 0.3395 -4.4636 -3.1047 38 1 1.3563 -7.1509 -2.0752 39 1 -0.3400 -6.6116 -2.0699 40 1 -3.8701 -6.6669 -3.8692 41 1 2.5816 -7.2597 -4.3684 42 1 0.4218 -7.8267 -6.5702 43 1 2.2498 -7.9241 -6.7938 44 1 2.3755 -9.7089 -4.9950 45 1 0.5475 -9.6125 -4.7705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713042115.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:22 Heat of formation + Delta-G solvation = 83.856402 kcal Electronic energy + Delta-G solvation = -26926.757991 eV Core-core repulsion = 23008.767745 eV Total energy + Delta-G solvation = -3917.990245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.77268 -39.19057 -37.38546 -37.37326 -35.34932 -34.45592 -33.60946 -31.90499 -30.90171 -30.00635 -29.43066 -26.50723 -25.21861 -23.83564 -22.51971 -21.63676 -21.19248 -20.85996 -20.01364 -19.60544 -17.97159 -16.68992 -16.50637 -16.26327 -15.77103 -15.61471 -15.40415 -15.19080 -14.72481 -14.01336 -13.87032 -13.79014 -13.59017 -13.41222 -13.06806 -12.97436 -12.69545 -12.60125 -12.44258 -12.13159 -12.12437 -12.10819 -12.06089 -11.15926 -11.08797 -11.04639 -10.83961 -10.65337 -10.37069 -10.06536 -9.89222 -9.72293 -9.61146 -9.46323 -9.42331 -8.96269 -8.91590 -8.53215 -6.75676 -6.05258 -3.48248 0.93070 1.08768 2.02749 2.11155 2.56425 3.29453 3.34379 3.46161 3.52200 3.98909 4.43576 4.47969 4.63896 4.72825 4.75852 4.85809 4.89911 4.92309 5.06024 5.24903 5.40844 5.48978 5.51465 5.54882 5.63396 5.77443 5.82200 5.96751 6.02360 6.03462 6.09089 6.18476 6.20568 6.33515 6.41333 6.48847 6.59633 6.73615 6.89161 6.92720 7.10187 7.10197 7.59574 8.01290 8.27489 8.35874 8.94497 9.65653 10.05851 11.09425 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014425 B = 0.002712 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.609558 B =10320.887156 C =11225.057020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.123 3.877 3 N -0.274 5.274 4 N -0.355 5.355 5 C 0.093 3.907 6 C 0.157 3.843 7 Cl 0.013 6.987 8 C -0.255 4.255 9 C 0.593 3.407 10 O -0.531 6.531 11 N -0.713 5.713 12 C 0.117 3.883 13 C -0.145 4.145 14 C 0.145 3.855 15 N -0.573 5.573 16 C -0.271 4.271 17 H 0.082 0.918 18 C 0.041 3.959 19 N -0.896 5.896 20 Si 0.872 3.128 21 H -0.282 1.282 22 H -0.301 1.301 23 H -0.266 1.266 24 C 0.120 3.880 25 C -0.188 4.188 26 C -0.225 4.225 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.402 0.598 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.264 0.736 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.143 14.772 7.453 23.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 N -0.097 5.097 4 N -0.137 5.137 5 C -0.048 4.048 6 C 0.000 4.000 7 Cl 0.041 6.959 8 C -0.271 4.271 9 C 0.377 3.623 10 O -0.407 6.407 11 N -0.364 5.364 12 C -0.006 4.006 13 C -0.186 4.186 14 C 0.019 3.981 15 N -0.292 5.292 16 C -0.399 4.399 17 H 0.100 0.900 18 C -0.161 4.161 19 N -0.536 5.536 20 Si 0.701 3.299 21 H -0.210 1.210 22 H -0.229 1.229 23 H -0.191 1.191 24 C 0.012 3.988 25 C -0.226 4.226 26 C -0.265 4.265 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.236 0.764 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.108 0.892 42 H 0.121 0.879 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 16.097 15.645 8.232 23.909 hybrid contribution 0.263 -1.294 0.405 1.381 sum 16.360 14.351 8.637 23.413 Atomic orbital electron populations 1.20347 0.85078 1.04360 1.04074 1.22350 0.97269 0.88196 0.96487 1.77290 0.84704 1.21505 1.26197 1.48361 1.06701 1.02616 1.55984 1.22072 0.83768 0.94561 1.04381 1.21935 0.89856 0.84200 1.04018 1.98443 1.35349 1.65466 1.96668 1.19864 0.90310 0.95474 1.21446 1.17094 0.77202 0.83949 0.84098 1.90800 1.51138 1.67553 1.31173 1.46095 1.68060 1.14075 1.08141 1.21517 1.00015 0.80115 0.98978 1.22386 1.02123 1.00595 0.93465 1.21035 0.99202 0.91250 0.86629 1.43665 1.08690 1.65725 1.11094 1.18713 0.81047 1.42984 0.97205 0.90019 1.25491 0.95149 0.97462 0.97954 1.69856 0.99692 1.43026 1.41004 0.87004 0.76956 0.82023 0.83878 1.21023 1.22876 1.19072 1.21156 0.91317 0.92098 0.94244 1.23063 1.02674 1.04687 0.92212 1.23387 1.01690 0.94695 1.06764 0.89494 0.89838 0.89607 0.89680 0.88228 0.89042 0.76396 0.91310 0.91669 0.92081 0.90380 0.93796 0.92489 0.92586 0.89152 0.87911 0.90543 0.90862 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.28 36.00 0.37 -0.42 16 2 C 0.12 1.50 7.26 -82.02 -0.60 0.91 16 3 N -0.27 -3.26 12.49 33.90 0.42 -2.84 16 4 N -0.35 -3.62 3.98 -64.32 -0.26 -3.87 16 5 C 0.09 0.50 11.28 59.85 0.67 1.18 16 6 C 0.16 1.80 7.54 -16.43 -0.12 1.68 16 7 Cl 0.01 0.12 28.56 -51.86 -1.48 -1.36 16 8 C -0.25 -3.36 5.88 -105.02 -0.62 -3.98 16 9 C 0.59 8.95 7.20 -12.58 -0.09 8.86 16 10 O -0.53 -9.91 17.11 5.27 0.09 -9.82 16 11 N -0.71 -9.80 5.55 -61.43 -0.34 -10.15 16 12 C 0.12 1.81 5.67 -4.04 -0.02 1.79 16 13 C -0.15 -2.44 5.65 -26.73 -0.15 -2.59 16 14 C 0.14 2.93 4.55 -4.04 -0.02 2.91 16 15 N -0.57 -12.91 2.39 -165.66 -0.40 -13.31 16 16 C -0.27 -7.18 8.96 -15.05 -0.13 -7.31 16 17 H 0.08 2.35 6.86 -52.48 -0.36 1.99 16 18 C 0.04 1.13 5.30 -17.43 -0.09 1.04 16 19 N -0.90 -26.42 13.97 55.49 0.78 -25.65 16 20 Si 0.87 21.68 25.08 -169.99 -4.26 17.42 16 21 H -0.28 -6.82 6.69 56.52 0.38 -6.44 16 22 H -0.30 -7.68 7.11 56.52 0.40 -7.27 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.12 2.35 6.56 -67.93 -0.45 1.90 16 25 C -0.19 -3.51 9.80 -26.69 -0.26 -3.77 16 26 C -0.22 -4.22 10.36 -26.69 -0.28 -4.50 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.87 8.01 -51.93 -0.42 0.46 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.36 7.77 -51.93 -0.40 -0.04 16 33 H 0.40 4.74 8.46 -40.82 -0.35 4.39 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 39 H 0.06 1.28 3.40 -51.93 -0.18 1.11 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 42 H 0.10 2.17 6.44 -51.93 -0.33 1.84 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.09 1.88 8.14 -51.92 -0.42 1.46 16 LS Contribution 391.35 15.07 5.90 5.90 Total: -1.00 -33.06 391.35 -8.02 -41.09 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -6.69 Total: 4.90 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -1.79 Total: -2.32 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.20 Total: -55.81 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.26 Total: 17.42 kcal Atomic # 17 Polarization: 0.12 SS G_CDS: -1.48 Total: -1.36 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.06 -8.02 -41.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713042115.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.945 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds