Wall clock time and date at job start Sat Apr 11 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30413 * 125.98053 * 2 1 4 4 N 1.39924 * 108.96183 * 180.26602 * 3 2 1 5 5 C 1.46501 * 125.74997 * 179.71316 * 4 3 2 6 6 C 1.34348 * 108.50142 * 359.70261 * 4 3 2 7 7 Cl 1.73597 * 126.32026 * 179.97438 * 6 4 3 8 8 C 1.38283 * 107.36298 * 0.02562 * 6 4 3 9 9 C 1.47294 * 126.43679 * 179.97438 * 8 6 4 10 10 O 1.21611 * 120.00166 * 90.02406 * 9 8 6 11 11 N 1.34783 * 119.99749 * 270.02331 * 9 8 6 12 12 C 1.46497 * 119.99744 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46878 * 180.02562 * 12 11 9 14 14 C 1.53011 * 109.46780 * 180.02562 * 13 12 11 15 15 N 1.46501 * 109.46850 * 180.02562 * 14 13 12 16 16 C 1.36943 * 119.99717 * 269.99987 * 15 14 13 17 17 H 1.08004 * 120.00031 * 141.42443 * 16 15 14 18 18 C 1.38817 * 119.99988 * 321.41829 * 16 15 14 19 19 N 1.31617 * 119.99620 * 157.77800 * 18 16 15 20 20 Si 1.86800 * 119.99823 * 337.77946 * 18 16 15 21 21 H 1.48496 * 109.47219 * 95.68041 * 20 18 16 22 22 H 1.48502 * 109.47011 * 215.67794 * 20 18 16 23 23 H 1.48496 * 109.47137 * 335.68005 * 20 18 16 24 24 C 1.46493 * 120.00309 * 89.99718 * 15 14 13 25 25 C 1.53004 * 117.50073 * 183.18933 * 24 15 14 26 26 C 1.53001 * 117.49918 * 114.53197 * 24 15 14 27 27 H 1.08999 * 109.46895 * 270.21852 * 1 2 3 28 28 H 1.09001 * 109.46883 * 30.22236 * 1 2 3 29 29 H 1.08997 * 109.47440 * 150.21543 * 1 2 3 30 30 H 1.09001 * 109.47211 * 269.99390 * 5 4 3 31 31 H 1.08996 * 109.47144 * 29.99529 * 5 4 3 32 32 H 1.08998 * 109.47204 * 149.99353 * 5 4 3 33 33 H 0.96991 * 120.00193 * 359.97438 * 11 9 8 34 34 H 1.08999 * 109.46933 * 59.99862 * 12 11 9 35 35 H 1.09001 * 109.47200 * 299.99914 * 12 11 9 36 36 H 1.08999 * 109.47454 * 60.00178 * 13 12 11 37 37 H 1.08995 * 109.47568 * 299.99422 * 13 12 11 38 38 H 1.08992 * 109.46979 * 299.99719 * 14 13 12 39 39 H 1.08999 * 109.47048 * 59.99849 * 14 13 12 40 40 H 0.97000 * 119.99601 * 180.02562 * 19 18 16 41 41 H 1.08998 * 115.55363 * 328.85915 * 24 15 14 42 42 H 1.08996 * 117.49850 * 0.02562 * 25 24 15 43 43 H 1.09004 * 117.49826 * 145.02124 * 25 24 15 44 44 H 1.09004 * 117.49680 * 214.98160 * 26 24 15 45 45 H 1.09009 * 117.49852 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2731 1.0553 0.0000 4 7 3.6111 0.6458 -0.0061 5 6 4.7775 1.5322 -0.0141 6 6 3.6459 -0.6972 -0.0033 7 17 5.0707 -1.6889 -0.0093 8 6 2.3372 -1.1439 0.0040 9 6 1.8921 -2.5480 0.0087 10 8 1.7131 -3.1256 1.0638 11 7 1.6831 -3.1926 -1.1564 12 6 1.2398 -4.5889 -1.1516 13 6 1.0798 -5.0780 -2.5925 14 6 0.6163 -6.5362 -2.5875 15 7 0.4637 -7.0047 -3.9672 16 6 -0.7379 -6.8643 -4.6089 17 1 -0.7634 -6.5987 -5.6555 18 6 -1.9232 -7.0636 -3.9144 19 7 -3.0419 -6.5280 -4.3548 20 14 -1.9303 -8.0918 -2.3549 21 1 -1.8183 -7.1996 -1.1732 22 1 -3.1977 -8.8617 -2.2754 23 1 -0.7808 -9.0316 -2.3763 24 6 1.5964 -7.6233 -4.6602 25 6 1.3961 -8.0238 -6.1233 26 6 1.4720 -9.1007 -5.0381 27 1 -0.3633 0.0039 1.0277 28 1 -0.3633 0.8880 -0.5173 29 1 -0.3634 -0.8919 -0.5105 30 1 5.0615 1.7498 -1.0437 31 1 4.5310 2.4617 0.4991 32 1 5.6079 1.0445 0.4965 33 1 1.8254 -2.7318 -1.9979 34 1 0.2839 -4.6648 -0.6335 35 1 1.9804 -5.2035 -0.6398 36 1 2.0360 -5.0021 -3.1103 37 1 0.3395 -4.4636 -3.1047 38 1 1.3563 -7.1509 -2.0752 39 1 -0.3400 -6.6116 -2.0699 40 1 -3.8701 -6.6669 -3.8692 41 1 2.5816 -7.2597 -4.3684 42 1 0.4218 -7.8267 -6.5702 43 1 2.2498 -7.9241 -6.7938 44 1 2.3755 -9.7089 -4.9950 45 1 0.5475 -9.6125 -4.7705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713042115.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:21 Heat of formation + Delta-G solvation = 61.992011 kcal Electronic energy + Delta-G solvation = -26927.706102 eV Core-core repulsion = 23008.767745 eV Total energy + Delta-G solvation = -3918.938357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.63608 -40.38966 -39.02287 -38.18923 -36.70266 -35.28254 -35.16099 -33.72837 -32.04281 -31.10528 -30.44461 -27.53810 -26.64636 -25.43501 -23.62032 -23.05343 -22.59466 -21.79737 -21.38517 -20.98033 -18.93412 -18.41611 -17.52620 -17.37714 -17.29883 -16.91933 -16.61264 -16.58759 -15.92115 -15.44080 -15.09954 -14.86758 -14.54891 -14.51701 -14.30853 -14.09537 -13.95464 -13.73779 -13.71418 -13.61872 -13.31009 -12.89853 -12.81266 -12.73012 -12.64063 -12.50346 -12.39166 -12.04395 -11.95948 -11.75722 -11.47346 -11.27671 -11.14287 -10.92223 -10.58656 -10.40824 -10.14193 -9.85444 -8.60348 -8.19343 -5.57165 0.09618 0.23313 1.11326 1.30517 1.40576 1.41606 1.42145 1.51631 2.21775 2.41539 3.01503 3.19417 3.23955 3.38126 3.67252 3.89324 4.08646 4.13849 4.19234 4.22687 4.29604 4.32304 4.39542 4.43911 4.54003 4.57142 4.60483 4.65282 4.71175 4.75702 4.83743 4.88607 4.97253 5.05874 5.23731 5.26399 5.32497 5.37077 5.45531 5.46956 5.56757 5.97553 6.23442 6.24890 6.47328 7.02282 7.13194 7.65955 8.06601 8.99696 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014425 B = 0.002712 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.609558 B =10320.887156 C =11225.057020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.116 3.884 3 N -0.286 5.286 4 N -0.347 5.347 5 C 0.079 3.921 6 C 0.160 3.840 7 Cl 0.027 6.973 8 C -0.283 4.283 9 C 0.600 3.400 10 O -0.571 6.571 11 N -0.703 5.703 12 C 0.127 3.873 13 C -0.126 4.126 14 C 0.137 3.863 15 N -0.587 5.587 16 C -0.247 4.247 17 H 0.049 0.951 18 C -0.013 4.013 19 N -0.944 5.944 20 Si 0.928 3.072 21 H -0.273 1.273 22 H -0.313 1.313 23 H -0.259 1.259 24 C 0.107 3.893 25 C -0.186 4.186 26 C -0.217 4.217 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.413 0.587 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.032 0.968 40 H 0.262 0.738 41 H 0.129 0.871 42 H 0.067 0.933 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.495 15.292 7.993 26.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.050 4.050 3 N -0.110 5.110 4 N -0.128 5.128 5 C -0.059 4.059 6 C 0.001 3.999 7 Cl 0.055 6.945 8 C -0.299 4.299 9 C 0.385 3.615 10 O -0.450 6.450 11 N -0.353 5.353 12 C 0.003 3.997 13 C -0.166 4.166 14 C 0.012 3.988 15 N -0.307 5.307 16 C -0.377 4.377 17 H 0.066 0.934 18 C -0.209 4.209 19 N -0.588 5.588 20 Si 0.758 3.242 21 H -0.200 1.200 22 H -0.242 1.242 23 H -0.183 1.183 24 C 0.000 4.000 25 C -0.224 4.224 26 C -0.258 4.258 27 H 0.110 0.890 28 H 0.117 0.883 29 H 0.097 0.903 30 H 0.122 0.878 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.249 0.751 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.146 0.854 42 H 0.086 0.914 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.507 16.189 8.756 26.819 hybrid contribution -0.621 -1.405 0.144 1.543 sum 18.886 14.784 8.900 25.582 Atomic orbital electron populations 1.20402 0.84172 1.04764 1.04518 1.22601 0.98076 0.87933 0.96402 1.77251 0.85562 1.21531 1.26654 1.48743 1.07166 1.02680 1.54224 1.22525 0.82652 0.94593 1.06139 1.21979 0.89870 0.84933 1.03122 1.98447 1.34289 1.65177 1.96540 1.19753 0.91497 0.94543 1.24145 1.17293 0.76196 0.84525 0.83486 1.90773 1.53027 1.68695 1.32543 1.45959 1.67339 1.13469 1.08573 1.21297 0.99504 0.81167 0.97776 1.22100 1.02330 0.97952 0.94236 1.21128 0.98808 0.93636 0.85218 1.43781 1.08216 1.66781 1.11873 1.18551 0.82784 1.40466 0.95892 0.93384 1.26000 0.94994 0.98940 1.01012 1.69968 1.00341 1.45467 1.43031 0.86077 0.76274 0.80561 0.81300 1.20018 1.24231 1.18324 1.21533 0.91559 0.92543 0.94379 1.23040 1.02315 1.04567 0.92481 1.23369 1.01828 0.94434 1.06153 0.89022 0.88253 0.90335 0.87787 0.86865 0.87337 0.75114 0.93161 0.90739 0.89781 0.92694 0.91195 0.95031 0.92918 0.85379 0.91446 0.86921 0.87188 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.55 10.28 71.23 0.73 -0.82 16 2 C 0.12 2.73 7.26 43.53 0.32 3.04 16 3 N -0.29 -6.41 12.49 -46.66 -0.58 -6.99 16 4 N -0.35 -6.37 3.98 -357.41 -1.42 -7.79 16 5 C 0.08 0.65 11.28 127.77 1.44 2.09 16 6 C 0.16 3.40 7.54 84.32 0.64 4.04 16 7 Cl 0.03 0.48 28.56 -2.72 -0.08 0.40 16 8 C -0.28 -7.22 5.88 -20.12 -0.12 -7.33 16 9 C 0.60 17.73 7.20 86.62 0.62 18.35 16 10 O -0.57 -21.27 17.11 -4.07 -0.07 -21.34 16 11 N -0.70 -18.56 5.55 -466.51 -2.59 -21.15 16 12 C 0.13 3.76 5.67 86.38 0.49 4.25 16 13 C -0.13 -4.03 5.65 30.60 0.17 -3.86 16 14 C 0.14 5.31 4.55 86.38 0.39 5.71 16 15 N -0.59 -25.78 2.39 -678.02 -1.62 -27.41 16 16 C -0.25 -13.33 8.96 84.03 0.75 -12.58 16 17 H 0.05 2.89 6.86 -2.91 -0.02 2.87 16 18 C -0.01 -0.72 5.30 84.86 0.45 -0.27 16 19 N -0.94 -57.91 13.97 21.65 0.30 -57.61 16 20 Si 0.93 45.78 25.08 68.60 1.72 47.50 16 21 H -0.27 -12.89 6.69 99.48 0.67 -12.23 16 22 H -0.31 -15.93 7.11 99.48 0.71 -15.22 16 23 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 24 C 0.11 3.87 6.56 44.99 0.30 4.17 16 25 C -0.19 -6.58 9.80 30.62 0.30 -6.28 16 26 C -0.22 -7.61 10.36 30.62 0.32 -7.29 16 27 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.61 8.01 -2.39 -0.02 1.59 16 30 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 0.53 7.77 -2.39 -0.02 0.51 16 33 H 0.41 9.16 8.46 -92.72 -0.78 8.37 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 39 H 0.03 1.40 3.40 -2.39 -0.01 1.39 16 40 H 0.26 15.37 8.31 -92.71 -0.77 14.59 16 41 H 0.13 3.71 8.14 -2.39 -0.02 3.69 16 42 H 0.07 2.88 6.44 -2.39 -0.02 2.87 16 43 H 0.11 3.16 8.14 -2.38 -0.02 3.14 16 44 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 45 H 0.06 2.37 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -73.76 391.35 2.65 -71.11 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.19 Total: 20.07 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 6.80 Total: 3.20 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -5.92 Total: -120.96 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.07 Total: -21.34 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.72 Total: 47.50 kcal Atomic # 17 Polarization: 0.48 SS G_CDS: -0.08 Total: 0.40 kcal Total: -73.76 2.65 -71.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713042115.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.105 kcal (2) G-P(sol) polarization free energy of solvation -73.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds