Wall clock time and date at job start Sat Apr 11 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35961 * 116.99657 * 2 1 4 4 C 1.37580 * 120.82152 * 180.27051 * 3 2 1 5 5 C 1.38032 * 114.24698 * 180.24292 * 4 3 2 6 6 C 1.47119 * 127.76101 * 179.80506 * 5 4 3 7 7 O 1.21631 * 119.99580 * 359.70580 * 6 5 4 8 8 N 1.34771 * 120.00179 * 179.70997 * 6 5 4 9 9 C 1.46503 * 120.00070 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47305 * 179.97438 * 9 8 6 11 11 N 1.46899 * 109.47462 * 179.97438 * 10 9 8 12 12 C 1.46900 * 111.00163 * 169.99896 * 11 10 9 13 13 C 1.53245 * 109.33848 * 172.74528 * 12 11 10 14 14 N 1.47085 * 108.52064 * 53.82868 * 13 12 11 15 15 C 1.36932 * 120.88213 * 128.79288 * 14 13 12 16 16 H 1.08002 * 119.99977 * 333.51665 * 15 14 13 17 17 C 1.38807 * 119.99998 * 153.50990 * 15 14 13 18 18 N 1.31621 * 119.99922 * 159.47661 * 17 15 14 19 19 Si 1.86799 * 120.00305 * 339.47796 * 17 15 14 20 20 H 1.48496 * 109.47486 * 91.94910 * 19 17 15 21 21 H 1.48498 * 109.47306 * 211.95251 * 19 17 15 22 22 H 1.48508 * 109.46864 * 331.95033 * 19 17 15 23 23 C 1.47080 * 118.23666 * 308.81221 * 14 13 12 24 24 C 1.46896 * 110.99839 * 45.68987 * 11 10 9 25 25 S 1.77234 * 104.48280 * 359.54521 * 5 4 3 26 26 N 1.30355 * 120.83309 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.46697 * 299.99275 * 1 2 3 28 28 H 1.08993 * 109.46997 * 59.99458 * 1 2 3 29 29 H 1.08998 * 109.46558 * 179.97438 * 1 2 3 30 30 H 1.07996 * 122.87254 * 0.08270 * 4 3 2 31 31 H 0.97004 * 120.00177 * 359.97438 * 8 6 5 32 32 H 1.08999 * 109.47402 * 59.99143 * 9 8 6 33 33 H 1.09000 * 109.46851 * 299.99234 * 9 8 6 34 34 H 1.08999 * 109.47456 * 59.99341 * 10 9 8 35 35 H 1.09008 * 109.47004 * 299.99588 * 10 9 8 36 36 H 1.09000 * 109.49448 * 52.78501 * 12 11 10 37 37 H 1.08995 * 109.49153 * 292.70371 * 12 11 10 38 38 H 1.08998 * 109.62846 * 173.53869 * 13 12 11 39 39 H 1.08997 * 109.62949 * 293.92586 * 13 12 11 40 40 H 0.97009 * 119.99909 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.62655 * 170.89395 * 23 14 13 42 42 H 1.08993 * 109.63223 * 291.48019 * 23 14 13 43 43 H 1.09001 * 109.49168 * 67.30395 * 24 11 10 44 44 H 1.08994 * 109.52148 * 307.23052 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4190 1.3032 -0.0056 5 6 3.9006 2.5968 0.0005 6 6 5.3050 3.0352 0.0010 7 8 6.1994 2.2109 0.0009 8 7 5.6004 4.3501 0.0015 9 6 6.9989 4.7867 0.0014 10 6 7.0559 6.3156 0.0014 11 7 8.4582 6.7534 0.0019 12 6 8.5583 8.1995 -0.2362 13 6 10.0125 8.6451 -0.0489 14 7 10.8704 7.8127 -0.9060 15 6 11.7764 8.3834 -1.7595 16 1 11.6066 9.3799 -2.1398 17 6 12.9131 7.6813 -2.1358 18 7 13.5653 8.0211 -3.2274 19 14 13.5174 6.2541 -1.0930 20 1 12.9228 4.9887 -1.5935 21 1 14.9977 6.1722 -1.1760 22 1 13.1118 6.4668 0.3197 23 6 10.7289 6.3512 -0.8223 24 6 9.2465 5.9958 -0.9792 25 16 2.4472 3.6110 -0.0001 26 7 1.3522 2.3149 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 4.0643 0.4373 -0.0115 31 1 4.8872 5.0075 0.0012 32 1 7.4987 4.4048 -0.8888 33 1 7.4990 4.4042 0.8911 34 1 6.5560 6.6979 0.8913 35 1 6.5559 6.6978 -0.8886 36 1 7.9213 8.7297 0.4717 37 1 8.2374 8.4236 -1.2535 38 1 10.1145 9.6919 -0.3351 39 1 10.3020 8.5210 0.9946 40 1 14.3600 7.5307 -3.4901 41 1 11.3044 5.8814 -1.6199 42 1 11.0882 6.0033 0.1461 43 1 8.9160 6.2507 -1.9861 44 1 9.1087 4.9278 -0.8106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713074558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:25 Heat of formation + Delta-G solvation = 25.832921 kcal Electronic energy + Delta-G solvation = -26403.966372 eV Core-core repulsion = 22485.503746 eV Total energy + Delta-G solvation = -3918.462626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.75292 -40.00807 -38.58669 -36.96551 -35.76656 -34.22560 -32.05668 -31.57516 -30.56358 -29.38798 -28.44600 -26.50955 -24.99065 -23.55042 -23.07640 -22.12825 -21.35049 -20.39083 -19.49475 -19.12855 -18.21652 -16.91457 -16.77083 -16.76681 -16.47928 -15.95157 -15.42292 -15.23566 -14.81764 -14.68632 -14.30962 -14.10924 -14.01565 -13.93772 -13.78054 -13.73679 -12.94365 -12.57752 -12.48584 -12.03420 -11.94323 -11.88658 -11.75560 -11.65080 -11.48869 -11.39377 -10.91403 -10.64622 -10.61058 -10.31231 -10.26077 -10.06639 -9.85408 -9.47542 -9.43394 -8.92441 -8.66162 -8.11432 -6.97542 -5.94739 -3.30381 -0.38795 0.62012 0.99395 1.70783 2.29110 2.61196 2.82207 3.34231 3.50969 3.54958 3.99780 4.18825 4.40096 4.54157 4.62802 4.64866 4.73279 4.74106 4.91456 4.97058 5.03606 5.18884 5.30754 5.31638 5.55140 5.55843 5.65836 5.69526 5.75737 5.86319 5.95519 5.96647 6.03734 6.19416 6.34279 6.47420 6.55486 6.63382 6.85605 6.91905 7.27508 7.34202 7.62634 7.93617 8.32107 8.92538 9.71664 10.10523 11.21138 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026611 B = 0.001956 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.930893 B =14313.667486 C =14988.783377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.293 6.293 3 C 0.307 3.693 4 C -0.126 4.126 5 C -0.180 4.180 6 C 0.593 3.407 7 O -0.508 6.508 8 N -0.716 5.716 9 C 0.113 3.887 10 C 0.044 3.956 11 N -0.529 5.529 12 C 0.043 3.957 13 C 0.152 3.848 14 N -0.608 5.608 15 C -0.260 4.260 16 H 0.086 0.914 17 C 0.022 3.978 18 N -0.909 5.909 19 Si 0.883 3.117 20 H -0.288 1.288 21 H -0.303 1.303 22 H -0.269 1.269 23 C 0.129 3.871 24 C 0.032 3.968 25 S 0.286 5.714 26 N -0.508 5.508 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.180 0.820 31 H 0.400 0.600 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.035 0.965 38 H 0.066 0.934 39 H 0.031 0.969 40 H 0.263 0.737 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.038 0.962 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.693 -11.218 8.072 30.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.199 6.199 3 C 0.093 3.907 4 C -0.163 4.163 5 C -0.312 4.312 6 C 0.376 3.624 7 O -0.384 6.384 8 N -0.368 5.368 9 C -0.010 4.010 10 C -0.085 4.085 11 N -0.255 5.255 12 C -0.086 4.086 13 C 0.025 3.975 14 N -0.333 5.333 15 C -0.389 4.389 16 H 0.103 0.897 17 C -0.177 4.177 18 N -0.552 5.552 19 Si 0.714 3.286 20 H -0.215 1.215 21 H -0.232 1.232 22 H -0.194 1.194 23 C 0.004 3.996 24 C -0.097 4.097 25 S 0.435 5.565 26 N -0.349 5.349 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.122 0.878 30 H 0.197 0.803 31 H 0.234 0.766 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -28.016 -10.558 8.414 31.099 hybrid contribution 0.364 -1.736 -0.332 1.805 sum -27.652 -12.294 8.082 31.322 Atomic orbital electron populations 1.23025 0.76414 1.03882 1.02670 1.86334 1.23225 1.22295 1.88028 1.19923 0.89804 0.85369 0.95568 1.20809 0.92405 0.98693 1.04434 1.25985 0.99253 0.97839 1.08095 1.16596 0.85333 0.82922 0.77560 1.90898 1.46628 1.52418 1.48411 1.45773 1.09985 1.06156 1.74875 1.21720 0.80109 0.95022 1.04118 1.22254 0.91822 0.93180 1.01246 1.62002 1.07295 1.05418 1.50738 1.22659 1.00035 0.86783 0.99098 1.20996 0.87619 0.94850 0.93997 1.44413 1.43159 1.00118 1.45561 1.18917 0.98606 1.02536 1.18792 0.89685 1.25263 0.96650 0.98413 0.97341 1.69839 1.20469 1.42603 1.22312 0.86959 0.76997 0.82369 0.82324 1.21542 1.23158 1.19418 1.21444 0.92707 0.85765 0.99723 1.22840 0.96520 0.97164 0.93192 1.84950 0.89941 1.12225 1.69387 1.76471 1.26489 1.00999 1.30983 0.91984 0.91982 0.87775 0.80269 0.76582 0.90071 0.89656 0.90243 0.94388 0.91399 0.94679 0.91566 0.95103 0.92764 0.90659 0.94803 0.94388 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.43 101.05 1.05 1.24 16 2 O -0.29 -2.45 10.51 -19.62 -0.21 -2.66 16 3 C 0.31 2.80 7.36 -18.42 -0.14 2.66 16 4 C -0.13 -1.14 10.09 -39.90 -0.40 -1.54 16 5 C -0.18 -1.63 6.74 -36.06 -0.24 -1.88 16 6 C 0.59 6.49 7.80 -12.66 -0.10 6.39 16 7 O -0.51 -7.44 16.95 5.25 0.09 -7.35 16 8 N -0.72 -6.52 5.55 -61.48 -0.34 -6.87 16 9 C 0.11 1.25 4.92 -4.04 -0.02 1.23 16 10 C 0.04 0.48 5.38 -3.83 -0.02 0.46 16 11 N -0.53 -8.04 4.78 -234.32 -1.12 -9.16 16 12 C 0.04 0.68 5.58 -3.70 -0.02 0.66 16 13 C 0.15 2.92 6.69 -3.60 -0.02 2.89 16 14 N -0.61 -14.38 2.82 -172.01 -0.48 -14.87 16 15 C -0.26 -7.25 10.08 -15.06 -0.15 -7.40 16 16 H 0.09 2.51 8.05 -52.49 -0.42 2.09 16 17 C 0.02 0.64 5.24 -17.43 -0.09 0.55 16 18 N -0.91 -27.86 13.97 55.49 0.78 -27.09 16 19 Si 0.88 22.51 24.31 -169.99 -4.13 18.38 16 20 H -0.29 -7.06 6.58 56.52 0.37 -6.69 16 21 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 22 H -0.27 -6.79 6.61 56.52 0.37 -6.42 16 23 C 0.13 2.83 4.35 -3.60 -0.02 2.81 16 24 C 0.03 0.56 5.04 -3.70 -0.02 0.54 16 25 S 0.29 2.14 23.27 -107.50 -2.50 -0.36 16 26 N -0.51 -4.68 11.03 29.19 0.32 -4.36 16 27 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 28 H 0.06 0.33 8.12 -51.93 -0.42 -0.09 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.18 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.40 2.56 7.83 -40.82 -0.32 2.24 16 32 H 0.08 1.01 6.18 -51.93 -0.32 0.69 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.04 0.40 8.08 -51.92 -0.42 -0.02 16 36 H 0.07 0.87 8.11 -51.93 -0.42 0.44 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 1.24 7.95 -51.93 -0.41 0.83 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.08 1.80 4.60 -51.93 -0.24 1.56 16 42 H 0.03 0.75 6.94 -51.93 -0.36 0.39 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 1.14 5.73 -51.93 -0.30 0.84 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -33.63 368.16 -8.45 -42.08 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -6.21 Total: -1.92 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -0.19 Total: 8.62 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: -0.85 Total: -62.34 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -0.12 Total: -10.01 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.13 Total: 18.38 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -2.50 Total: -0.36 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.63 -8.45 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713074558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.914 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds