Wall clock time and date at job start Sat Apr 11 2020 06:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35961 * 116.99657 * 2 1 4 4 C 1.37580 * 120.82152 * 180.27051 * 3 2 1 5 5 C 1.38032 * 114.24698 * 180.24292 * 4 3 2 6 6 C 1.47119 * 127.76101 * 179.80506 * 5 4 3 7 7 O 1.21631 * 119.99580 * 359.70580 * 6 5 4 8 8 N 1.34771 * 120.00179 * 179.70997 * 6 5 4 9 9 C 1.46503 * 120.00070 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47305 * 179.97438 * 9 8 6 11 11 N 1.46899 * 109.47462 * 179.97438 * 10 9 8 12 12 C 1.46900 * 111.00163 * 169.99896 * 11 10 9 13 13 C 1.53245 * 109.33848 * 172.74528 * 12 11 10 14 14 N 1.47085 * 108.52064 * 53.82868 * 13 12 11 15 15 C 1.36932 * 120.88213 * 128.79288 * 14 13 12 16 16 H 1.08002 * 119.99977 * 333.51665 * 15 14 13 17 17 C 1.38807 * 119.99998 * 153.50990 * 15 14 13 18 18 N 1.31621 * 119.99922 * 159.47661 * 17 15 14 19 19 Si 1.86799 * 120.00305 * 339.47796 * 17 15 14 20 20 H 1.48496 * 109.47486 * 91.94910 * 19 17 15 21 21 H 1.48498 * 109.47306 * 211.95251 * 19 17 15 22 22 H 1.48508 * 109.46864 * 331.95033 * 19 17 15 23 23 C 1.47080 * 118.23666 * 308.81221 * 14 13 12 24 24 C 1.46896 * 110.99839 * 45.68987 * 11 10 9 25 25 S 1.77234 * 104.48280 * 359.54521 * 5 4 3 26 26 N 1.30355 * 120.83309 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.46697 * 299.99275 * 1 2 3 28 28 H 1.08993 * 109.46997 * 59.99458 * 1 2 3 29 29 H 1.08998 * 109.46558 * 179.97438 * 1 2 3 30 30 H 1.07996 * 122.87254 * 0.08270 * 4 3 2 31 31 H 0.97004 * 120.00177 * 359.97438 * 8 6 5 32 32 H 1.08999 * 109.47402 * 59.99143 * 9 8 6 33 33 H 1.09000 * 109.46851 * 299.99234 * 9 8 6 34 34 H 1.08999 * 109.47456 * 59.99341 * 10 9 8 35 35 H 1.09008 * 109.47004 * 299.99588 * 10 9 8 36 36 H 1.09000 * 109.49448 * 52.78501 * 12 11 10 37 37 H 1.08995 * 109.49153 * 292.70371 * 12 11 10 38 38 H 1.08998 * 109.62846 * 173.53869 * 13 12 11 39 39 H 1.08997 * 109.62949 * 293.92586 * 13 12 11 40 40 H 0.97009 * 119.99909 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.62655 * 170.89395 * 23 14 13 42 42 H 1.08993 * 109.63223 * 291.48019 * 23 14 13 43 43 H 1.09001 * 109.49168 * 67.30395 * 24 11 10 44 44 H 1.08994 * 109.52148 * 307.23052 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4190 1.3032 -0.0056 5 6 3.9006 2.5968 0.0005 6 6 5.3050 3.0352 0.0010 7 8 6.1994 2.2109 0.0009 8 7 5.6004 4.3501 0.0015 9 6 6.9989 4.7867 0.0014 10 6 7.0559 6.3156 0.0014 11 7 8.4582 6.7534 0.0019 12 6 8.5583 8.1995 -0.2362 13 6 10.0125 8.6451 -0.0489 14 7 10.8704 7.8127 -0.9060 15 6 11.7764 8.3834 -1.7595 16 1 11.6066 9.3799 -2.1398 17 6 12.9131 7.6813 -2.1358 18 7 13.5653 8.0211 -3.2274 19 14 13.5174 6.2541 -1.0930 20 1 12.9228 4.9887 -1.5935 21 1 14.9977 6.1722 -1.1760 22 1 13.1118 6.4668 0.3197 23 6 10.7289 6.3512 -0.8223 24 6 9.2465 5.9958 -0.9792 25 16 2.4472 3.6110 -0.0001 26 7 1.3522 2.3149 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 4.0643 0.4373 -0.0115 31 1 4.8872 5.0075 0.0012 32 1 7.4987 4.4048 -0.8888 33 1 7.4990 4.4042 0.8911 34 1 6.5560 6.6979 0.8913 35 1 6.5559 6.6978 -0.8886 36 1 7.9213 8.7297 0.4717 37 1 8.2374 8.4236 -1.2535 38 1 10.1145 9.6919 -0.3351 39 1 10.3020 8.5210 0.9946 40 1 14.3600 7.5307 -3.4901 41 1 11.3044 5.8814 -1.6199 42 1 11.0882 6.0033 0.1461 43 1 8.9160 6.2507 -1.9861 44 1 9.1087 4.9278 -0.8106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713074558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:24 Heat of formation + Delta-G solvation = -2.830771 kcal Electronic energy + Delta-G solvation = -26405.209323 eV Core-core repulsion = 22485.503746 eV Total energy + Delta-G solvation = -3919.705577 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.42483 -40.84018 -39.91276 -37.61956 -37.02328 -35.56068 -33.67273 -32.64747 -32.04784 -30.54973 -29.05105 -27.86834 -25.90143 -25.00445 -24.61371 -23.02249 -22.41632 -21.25426 -20.93299 -19.86462 -18.86144 -18.75205 -17.72779 -17.43356 -17.36015 -17.05571 -16.75894 -16.02554 -15.94875 -15.80748 -15.74252 -15.59691 -15.41577 -14.90249 -14.57158 -14.52424 -14.35578 -14.24968 -13.77626 -13.41411 -13.05099 -12.96981 -12.77412 -12.59823 -12.42383 -12.21833 -12.16030 -12.10046 -12.03545 -11.77242 -11.61138 -11.47113 -11.42251 -10.97591 -10.72940 -10.31276 -9.50520 -9.37544 -8.89225 -8.16990 -5.47846 -1.08793 -0.02363 0.35893 1.01472 1.30366 1.41811 1.50968 1.55575 1.80921 2.19177 2.41432 2.94042 3.08269 3.37084 3.38407 3.68712 3.77271 4.03933 4.05649 4.15579 4.24190 4.27758 4.33969 4.39983 4.46421 4.50669 4.56164 4.58633 4.70629 4.72585 4.79073 4.89360 4.92416 4.95273 4.98303 5.03496 5.14282 5.32472 5.83008 5.90592 6.04040 6.07414 6.16539 6.21619 6.84536 6.90305 7.61637 8.04151 9.02761 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026611 B = 0.001956 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.930893 B =14313.667486 C =14988.783377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.305 6.305 3 C 0.301 3.699 4 C -0.131 4.131 5 C -0.191 4.191 6 C 0.596 3.404 7 O -0.551 6.551 8 N -0.700 5.700 9 C 0.118 3.882 10 C 0.050 3.950 11 N -0.536 5.536 12 C 0.054 3.946 13 C 0.143 3.857 14 N -0.624 5.624 15 C -0.247 4.247 16 H 0.055 0.945 17 C -0.035 4.035 18 N -0.957 5.957 19 Si 0.945 3.055 20 H -0.275 1.275 21 H -0.311 1.311 22 H -0.264 1.264 23 C 0.123 3.877 24 C 0.045 3.955 25 S 0.338 5.662 26 N -0.525 5.525 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.129 0.871 30 H 0.181 0.819 31 H 0.416 0.584 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.051 0.949 36 H 0.108 0.892 37 H 0.026 0.974 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.261 0.739 41 H 0.050 0.950 42 H 0.034 0.966 43 H 0.027 0.973 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.620 -11.699 9.776 34.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.211 6.211 3 C 0.089 3.911 4 C -0.169 4.169 5 C -0.323 4.323 6 C 0.380 3.620 7 O -0.430 6.430 8 N -0.353 5.353 9 C -0.005 4.005 10 C -0.078 4.078 11 N -0.261 5.261 12 C -0.075 4.075 13 C 0.018 3.982 14 N -0.349 5.349 15 C -0.376 4.376 16 H 0.073 0.927 17 C -0.230 4.230 18 N -0.603 5.603 19 Si 0.774 3.226 20 H -0.201 1.201 21 H -0.240 1.240 22 H -0.188 1.188 23 C -0.002 4.002 24 C -0.085 4.085 25 S 0.487 5.513 26 N -0.368 5.368 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.147 0.853 30 H 0.198 0.802 31 H 0.253 0.747 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.127 0.873 35 H 0.070 0.930 36 H 0.126 0.874 37 H 0.045 0.955 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.046 0.954 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -31.028 -11.017 10.156 34.457 hybrid contribution 1.119 -1.489 -0.841 2.044 sum -29.909 -12.506 9.314 33.730 Atomic orbital electron populations 1.23249 0.74959 1.05599 1.02593 1.86326 1.24723 1.22102 1.87904 1.19927 0.89811 0.85632 0.95771 1.20894 0.92608 0.98952 1.04453 1.25783 0.99026 0.98544 1.08904 1.16769 0.85601 0.82952 0.76694 1.90879 1.48009 1.53554 1.50510 1.45569 1.09839 1.05998 1.73882 1.21532 0.80839 0.95106 1.03029 1.22296 0.89301 0.92862 1.03293 1.61939 1.09724 1.04910 1.49551 1.22510 0.97654 0.87438 0.99850 1.21222 0.89306 0.94317 0.93311 1.44567 1.42989 1.01422 1.45897 1.18892 0.99117 1.01300 1.18333 0.92713 1.25861 0.97226 1.01590 0.98341 1.69962 1.21375 1.44820 1.24177 0.85950 0.75708 0.80123 0.80783 1.20147 1.24002 1.18826 1.21451 0.95677 0.84463 0.98602 1.22582 0.93837 0.98683 0.93388 1.84711 0.87979 1.10536 1.68027 1.76381 1.27510 1.01647 1.31224 0.91967 0.92076 0.85257 0.80209 0.74711 0.91616 0.90476 0.87292 0.93035 0.87373 0.95532 0.91882 0.94487 0.92997 0.93143 0.94800 0.95449 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.43 113.37 1.18 1.46 16 2 O -0.30 -4.76 10.51 -93.11 -0.98 -5.74 16 3 C 0.30 5.13 7.36 84.76 0.62 5.75 16 4 C -0.13 -2.24 10.09 22.07 0.22 -2.02 16 5 C -0.19 -3.15 6.74 24.55 0.17 -2.98 16 6 C 0.60 12.08 7.80 86.57 0.68 12.76 16 7 O -0.55 -15.79 16.95 -4.13 -0.07 -15.86 16 8 N -0.70 -10.81 5.55 -466.68 -2.59 -13.40 16 9 C 0.12 2.28 4.92 86.38 0.43 2.70 16 10 C 0.05 0.89 5.38 86.30 0.46 1.36 16 11 N -0.54 -14.48 4.78 -895.25 -4.28 -18.76 16 12 C 0.05 1.52 5.58 86.39 0.48 2.00 16 13 C 0.14 5.29 6.69 86.35 0.58 5.86 16 14 N -0.62 -29.25 2.82 -698.12 -1.97 -31.22 16 15 C -0.25 -14.03 10.08 84.03 0.85 -13.19 16 16 H 0.06 3.37 8.05 -2.91 -0.02 3.35 16 17 C -0.04 -2.09 5.24 84.86 0.44 -1.65 16 18 N -0.96 -60.58 13.97 21.65 0.30 -60.27 16 19 Si 0.95 47.43 24.31 68.60 1.67 49.10 16 20 H -0.27 -13.05 6.58 99.48 0.65 -12.40 16 21 H -0.31 -15.86 7.11 99.48 0.71 -15.15 16 22 H -0.26 -12.81 6.61 99.48 0.66 -12.15 16 23 C 0.12 5.26 4.35 86.35 0.38 5.64 16 24 C 0.04 1.47 5.04 86.39 0.44 1.90 16 25 S 0.34 4.20 23.27 -56.49 -1.31 2.89 16 26 N -0.52 -8.73 11.03 -175.22 -1.93 -10.66 16 27 H 0.06 0.57 8.13 -2.39 -0.02 0.55 16 28 H 0.06 0.57 8.12 -2.39 -0.02 0.55 16 29 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.18 2.94 8.06 -2.91 -0.02 2.91 16 31 H 0.42 3.76 7.83 -92.71 -0.73 3.04 16 32 H 0.07 1.50 6.18 -2.39 -0.01 1.49 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 0.84 8.08 -2.38 -0.02 0.82 16 36 H 0.11 2.21 8.11 -2.39 -0.02 2.19 16 37 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 2.32 7.95 -2.39 -0.02 2.30 16 39 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 41 H 0.05 2.39 4.60 -2.39 -0.01 2.38 16 42 H 0.03 1.45 6.94 -2.39 -0.02 1.44 16 43 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 2.70 5.73 -2.39 -0.01 2.69 16 Total: -1.00 -74.77 368.16 -4.03 -78.80 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 0.21 Total: 5.51 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: 6.92 Total: 19.60 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -10.47 Total: -134.31 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -1.05 Total: -21.59 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.67 Total: 49.10 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -1.31 Total: 2.89 kcal Total: -74.77 -4.03 -78.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713074558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.969 kcal (2) G-P(sol) polarization free energy of solvation -74.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds