Wall clock time and date at job start Sat Apr 11 2020 06:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86803 * 119.99840 * 2 1 4 4 H 1.48500 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46984 * 299.99804 * 3 2 1 6 6 H 1.48497 * 109.46781 * 59.99706 * 3 2 1 7 7 C 1.38950 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99722 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99882 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99657 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00217 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99958 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47305 * 180.02562 * 12 10 9 14 14 C 1.46900 * 111.00090 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47077 * 179.97438 * 14 13 12 16 16 H 1.08995 * 110.89209 * 302.56830 * 15 14 13 17 17 C 1.55156 * 111.00495 * 66.45570 * 15 14 13 18 18 C 1.54318 * 102.94550 * 153.61333 * 17 15 14 19 19 N 1.47022 * 107.27265 * 337.80163 * 18 17 15 20 20 C 1.34770 * 125.65182 * 178.90202 * 19 18 17 21 21 O 1.21281 * 120.00233 * 180.02562 * 20 19 18 22 22 C 1.50702 * 119.99868 * 0.02925 * 20 19 18 23 23 H 1.08998 * 110.50479 * 42.73962 * 22 20 19 24 24 C 1.54087 * 110.56401 * 279.99730 * 22 20 19 25 25 O 1.45706 * 104.01006 * 241.42796 * 24 22 20 26 26 C 1.33775 * 109.47244 * 0.02562 * 25 24 22 27 27 O 1.21517 * 123.06568 * 179.97438 * 26 25 24 28 28 N 1.33992 * 113.85933 * 359.97438 * 26 25 24 29 29 C 1.47428 * 108.70039 * 359.17132 * 19 18 17 30 30 H 0.96996 * 119.99776 * 0.02562 * 1 2 3 31 31 H 0.96991 * 120.00044 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.46848 * 60.00018 * 12 10 9 33 33 H 1.09003 * 109.47374 * 299.99790 * 12 10 9 34 34 H 1.00899 * 111.00392 * 56.04521 * 13 12 10 35 35 H 1.09004 * 109.47396 * 59.99290 * 14 13 12 36 36 H 1.09003 * 109.46664 * 300.00032 * 14 13 12 37 37 H 1.09001 * 110.72429 * 35.24269 * 17 15 14 38 38 H 1.09003 * 110.71546 * 271.97783 * 17 15 14 39 39 H 1.09005 * 109.88337 * 218.38724 * 18 17 15 40 40 H 1.09007 * 109.88514 * 97.22263 * 18 17 15 41 41 H 1.09002 * 110.52391 * 122.79810 * 24 22 20 42 42 H 1.08997 * 110.64065 * 0.11441 * 24 22 20 43 43 H 0.97001 * 125.56399 * 180.02562 * 28 26 25 44 44 H 1.08995 * 110.36612 * 142.73465 * 29 19 18 45 45 H 1.08997 * 110.36620 * 265.06427 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5577 -0.0010 12 6 1.2440 -4.8629 -0.0011 13 7 2.1986 -5.9795 -0.0004 14 6 1.4984 -7.2708 -0.0015 15 6 2.5233 -8.4067 -0.0014 16 1 3.1913 -8.3277 -0.8590 17 6 3.3245 -8.4327 1.3271 18 6 3.7476 -9.9119 1.4468 19 7 2.8145 -10.7004 0.6287 20 6 2.8590 -12.0359 0.4535 21 8 2.0341 -12.5835 -0.2470 22 6 3.9338 -12.8490 1.1279 23 1 4.0753 -12.5166 2.1563 24 6 5.2560 -12.7560 0.3422 25 8 5.5271 -14.1310 -0.0561 26 6 4.5529 -14.9273 0.3983 27 8 4.5330 -16.1269 0.2055 28 7 3.6011 -14.2812 1.0853 29 6 1.8259 -9.7873 0.0267 30 1 -0.4849 0.8400 -0.0004 31 1 0.3535 -2.3907 -0.0005 32 1 0.6177 -4.9205 -0.8914 33 1 0.6170 -4.9210 0.8886 34 1 2.8329 -5.9125 0.7814 35 1 0.8743 -7.3450 -0.8922 36 1 0.8725 -7.3455 0.8878 37 1 2.6907 -8.1437 2.1655 38 1 4.1991 -7.7854 1.2625 39 1 3.6891 -10.2312 2.4874 40 1 4.7644 -10.0380 1.0748 41 1 6.0545 -12.3788 0.9812 42 1 5.1377 -12.1203 -0.5353 43 1 2.8201 -14.6910 1.4890 44 1 1.5794 -10.1088 -0.9851 45 1 0.9268 -9.7430 0.6413 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714348557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:45 Heat of formation + Delta-G solvation = -129.889230 kcal Electronic energy + Delta-G solvation = -28632.856194 eV Core-core repulsion = 24264.888078 eV Total energy + Delta-G solvation = -4367.968116 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.36163 -40.43586 -38.60248 -38.08304 -37.57705 -35.57311 -35.22747 -33.94287 -32.42862 -31.26822 -30.43146 -29.88650 -27.46173 -25.70474 -24.61945 -23.46297 -23.22656 -22.92907 -20.67977 -20.22722 -19.30490 -18.73761 -18.32376 -17.95126 -17.64058 -16.95789 -16.76769 -16.01748 -15.87517 -15.55401 -15.02363 -14.88553 -14.81723 -14.65772 -14.48830 -14.21566 -14.14186 -13.77763 -13.56053 -13.41541 -13.37807 -12.87376 -12.84215 -12.56208 -12.13763 -11.64949 -11.62134 -11.46846 -11.40063 -11.20225 -11.13251 -11.10236 -11.00539 -10.85562 -10.38917 -10.27942 -9.87295 -9.57670 -9.26719 -8.55657 -8.17373 -8.02213 -6.47387 -3.88462 1.77397 1.88735 2.18637 2.38024 2.94937 3.12130 3.23247 3.30013 3.37114 3.56138 3.83481 3.90246 3.95556 4.05627 4.15628 4.31860 4.35823 4.54509 4.57648 4.71452 4.77904 4.89414 4.92748 5.07186 5.18918 5.20374 5.29571 5.35575 5.43337 5.50712 5.65837 5.70441 5.77229 5.89531 5.97207 6.17889 6.19020 6.64015 6.81625 7.07243 7.40272 7.50005 7.53282 7.55996 8.00480 8.54790 9.12109 9.48112 9.98940 10.70272 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.041955 B = 0.001531 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.218292 B =18286.254137 C =18689.393222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.667 5.667 14 C 0.070 3.930 15 C -0.097 4.097 16 H 0.098 0.902 17 C -0.132 4.132 18 C 0.093 3.907 19 N -0.612 5.612 20 C 0.517 3.483 21 O -0.518 6.518 22 C 0.080 3.920 23 H 0.128 0.872 24 C 0.055 3.945 25 O -0.321 6.321 26 C 0.652 3.348 27 O -0.515 6.515 28 N -0.711 5.711 29 C 0.111 3.889 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.349 0.651 35 H 0.076 0.924 36 H 0.031 0.969 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.441 0.559 44 H 0.083 0.917 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.594 -21.848 6.478 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.430 4.430 8 H 0.122 0.878 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.469 6.469 12 C -0.082 4.082 13 N -0.300 5.300 14 C -0.060 4.060 15 C -0.116 4.116 16 H 0.116 0.884 17 C -0.170 4.170 18 C -0.030 4.030 19 N -0.347 5.347 20 C 0.302 3.698 21 O -0.393 6.393 22 C -0.030 4.030 23 H 0.145 0.855 24 C -0.021 4.021 25 O -0.231 6.231 26 C 0.404 3.596 27 O -0.399 6.399 28 N -0.384 5.384 29 C -0.012 4.012 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.168 0.832 35 H 0.095 0.905 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.140 0.860 42 H 0.129 0.871 43 H 0.285 0.715 44 H 0.102 0.898 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.278 -22.692 5.091 23.848 hybrid contribution -1.150 1.008 1.237 1.967 sum 4.128 -21.684 6.328 22.963 Atomic orbital electron populations 1.69619 1.05958 1.28123 1.50509 1.25274 0.95637 0.99769 0.97240 0.85795 0.79702 0.81083 0.77735 1.19203 1.20711 1.20767 1.19759 0.93414 0.82203 1.47613 0.87825 1.41873 1.09226 1.04639 1.64195 1.19788 0.88383 0.84708 0.84615 1.90520 1.13733 1.87067 1.55548 1.21675 0.94315 0.90924 1.01300 1.60018 1.18962 0.99740 1.51288 1.21841 0.94716 0.88538 1.00945 1.22353 0.97744 0.92633 0.98915 0.88361 1.22760 1.01852 0.94249 0.98116 1.22247 0.93307 0.92181 0.95219 1.48488 1.31658 1.05481 1.49042 1.20171 0.86287 0.81203 0.82125 1.90802 1.40266 1.69955 1.38267 1.22266 0.94484 0.83628 1.02625 0.85456 1.24255 0.94980 0.81942 1.00905 1.87327 1.44679 1.19275 1.71789 1.18413 0.78634 0.85666 0.76894 1.91110 1.77370 1.09849 1.61569 1.45671 1.27978 1.06077 1.58625 1.22285 0.91397 0.87979 0.99500 0.91880 0.77452 0.89508 0.93844 0.83158 0.90534 0.95109 0.90254 0.88684 0.90777 0.90762 0.85955 0.87073 0.71496 0.89836 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.86 13.05 55.50 0.72 -23.14 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.44 29.55 -169.99 -5.02 15.42 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.12 9.68 -14.93 -0.14 -8.27 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 9 N -0.56 -13.69 5.29 -10.96 -0.06 -13.75 16 10 C 0.44 9.79 7.82 -10.99 -0.09 9.71 16 11 O -0.58 -15.03 15.78 5.54 0.09 -14.95 16 12 C 0.05 0.80 6.17 -4.97 -0.03 0.77 16 13 N -0.67 -9.10 6.12 -115.06 -0.70 -9.81 16 14 C 0.07 0.65 5.19 -3.83 -0.02 0.63 16 15 C -0.10 -0.70 3.28 -88.59 -0.29 -0.99 16 16 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 17 C -0.13 -0.71 5.63 -24.90 -0.14 -0.85 16 18 C 0.09 0.32 6.31 -3.07 -0.02 0.30 16 19 N -0.61 -3.70 3.33 -170.65 -0.57 -4.27 16 20 C 0.52 3.88 6.98 -10.99 -0.08 3.80 16 21 O -0.52 -6.25 16.82 5.56 0.09 -6.16 16 22 C 0.08 0.36 3.51 -68.19 -0.24 0.12 16 23 H 0.13 0.13 7.71 -51.93 -0.40 -0.27 16 24 C 0.05 0.22 7.68 37.73 0.29 0.51 16 25 O -0.32 -2.86 11.09 -37.84 -0.42 -3.28 16 26 C 0.65 6.83 9.16 53.70 0.49 7.32 16 27 O -0.52 -7.51 18.04 -19.12 -0.34 -7.86 16 28 N -0.71 -4.99 5.63 -59.36 -0.33 -5.32 16 29 C 0.11 0.78 6.37 -2.64 -0.02 0.77 16 30 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.39 9.11 7.90 -40.82 -0.32 8.79 16 32 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.35 4.78 7.65 -39.29 -0.30 4.48 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.03 0.26 8.11 -51.93 -0.42 -0.16 16 37 H 0.08 0.43 8.01 -51.93 -0.42 0.01 16 38 H 0.09 0.54 8.12 -51.93 -0.42 0.12 16 39 H 0.07 0.13 8.01 -51.93 -0.42 -0.29 16 40 H 0.07 0.13 7.95 -51.92 -0.41 -0.28 16 41 H 0.12 0.05 8.14 -51.93 -0.42 -0.37 16 42 H 0.11 0.41 7.73 -51.93 -0.40 0.01 16 43 H 0.44 2.57 8.96 -40.82 -0.37 2.21 16 44 H 0.08 0.69 8.04 -51.93 -0.42 0.27 16 45 H 0.07 0.51 8.03 -51.93 -0.42 0.09 16 LS Contribution 381.69 15.07 5.75 5.75 Total: -1.00 -37.01 381.69 -7.51 -44.52 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.34 Total: 8.50 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: -0.38 Total: 14.33 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.94 Total: -56.28 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.58 Total: -32.24 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.01 -7.51 -44.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714348557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.365 kcal (2) G-P(sol) polarization free energy of solvation -37.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds