Wall clock time and date at job start Sat Apr 11 2020 06:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86803 * 119.99840 * 2 1 4 4 H 1.48500 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46984 * 299.99804 * 3 2 1 6 6 H 1.48497 * 109.46781 * 59.99706 * 3 2 1 7 7 C 1.38950 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99722 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99882 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99657 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00217 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99958 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47305 * 180.02562 * 12 10 9 14 14 C 1.46900 * 111.00090 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47077 * 179.97438 * 14 13 12 16 16 H 1.08995 * 110.89209 * 302.56830 * 15 14 13 17 17 C 1.55156 * 111.00495 * 66.45570 * 15 14 13 18 18 C 1.54318 * 102.94550 * 153.61333 * 17 15 14 19 19 N 1.47022 * 107.27265 * 337.80163 * 18 17 15 20 20 C 1.34770 * 125.65182 * 178.90202 * 19 18 17 21 21 O 1.21281 * 120.00233 * 180.02562 * 20 19 18 22 22 C 1.50702 * 119.99868 * 0.02925 * 20 19 18 23 23 H 1.08998 * 110.50479 * 42.73962 * 22 20 19 24 24 C 1.54087 * 110.56401 * 279.99730 * 22 20 19 25 25 O 1.45706 * 104.01006 * 241.42796 * 24 22 20 26 26 C 1.33775 * 109.47244 * 0.02562 * 25 24 22 27 27 O 1.21517 * 123.06568 * 179.97438 * 26 25 24 28 28 N 1.33992 * 113.85933 * 359.97438 * 26 25 24 29 29 C 1.47428 * 108.70039 * 359.17132 * 19 18 17 30 30 H 0.96996 * 119.99776 * 0.02562 * 1 2 3 31 31 H 0.96991 * 120.00044 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.46848 * 60.00018 * 12 10 9 33 33 H 1.09003 * 109.47374 * 299.99790 * 12 10 9 34 34 H 1.00899 * 111.00392 * 56.04521 * 13 12 10 35 35 H 1.09004 * 109.47396 * 59.99290 * 14 13 12 36 36 H 1.09003 * 109.46664 * 300.00032 * 14 13 12 37 37 H 1.09001 * 110.72429 * 35.24269 * 17 15 14 38 38 H 1.09003 * 110.71546 * 271.97783 * 17 15 14 39 39 H 1.09005 * 109.88337 * 218.38724 * 18 17 15 40 40 H 1.09007 * 109.88514 * 97.22263 * 18 17 15 41 41 H 1.09002 * 110.52391 * 122.79810 * 24 22 20 42 42 H 1.08997 * 110.64065 * 0.11441 * 24 22 20 43 43 H 0.97001 * 125.56399 * 180.02562 * 28 26 25 44 44 H 1.08995 * 110.36612 * 142.73465 * 29 19 18 45 45 H 1.08997 * 110.36620 * 265.06427 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5577 -0.0010 12 6 1.2440 -4.8629 -0.0011 13 7 2.1986 -5.9795 -0.0004 14 6 1.4984 -7.2708 -0.0015 15 6 2.5233 -8.4067 -0.0014 16 1 3.1913 -8.3277 -0.8590 17 6 3.3245 -8.4327 1.3271 18 6 3.7476 -9.9119 1.4468 19 7 2.8145 -10.7004 0.6287 20 6 2.8590 -12.0359 0.4535 21 8 2.0341 -12.5835 -0.2470 22 6 3.9338 -12.8490 1.1279 23 1 4.0753 -12.5166 2.1563 24 6 5.2560 -12.7560 0.3422 25 8 5.5271 -14.1310 -0.0561 26 6 4.5529 -14.9273 0.3983 27 8 4.5330 -16.1269 0.2055 28 7 3.6011 -14.2812 1.0853 29 6 1.8259 -9.7873 0.0267 30 1 -0.4849 0.8400 -0.0004 31 1 0.3535 -2.3907 -0.0005 32 1 0.6177 -4.9205 -0.8914 33 1 0.6170 -4.9210 0.8886 34 1 2.8329 -5.9125 0.7814 35 1 0.8743 -7.3450 -0.8922 36 1 0.8725 -7.3455 0.8878 37 1 2.6907 -8.1437 2.1655 38 1 4.1991 -7.7854 1.2625 39 1 3.6891 -10.2312 2.4874 40 1 4.7644 -10.0380 1.0748 41 1 6.0545 -12.3788 0.9812 42 1 5.1377 -12.1203 -0.5353 43 1 2.8201 -14.6910 1.4890 44 1 1.5794 -10.1088 -0.9851 45 1 0.9268 -9.7430 0.6413 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714348557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:44 Heat of formation + Delta-G solvation = -162.537909 kcal Electronic energy + Delta-G solvation = -28634.271947 eV Core-core repulsion = 24264.888078 eV Total energy + Delta-G solvation = -4369.383869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.94371 -41.01952 -40.12621 -38.98071 -38.36681 -36.63822 -35.81980 -35.78788 -33.35701 -33.05773 -30.92847 -30.43537 -28.61889 -26.78657 -25.72186 -24.28520 -23.90887 -23.58594 -21.36159 -20.97878 -20.71849 -19.88257 -19.29284 -18.83819 -18.25876 -17.93605 -17.47294 -17.20477 -16.66964 -16.61985 -16.38766 -15.97844 -15.66650 -15.52925 -15.31946 -15.19830 -14.95512 -14.72876 -14.65289 -14.23763 -13.96462 -13.85201 -13.50884 -13.39594 -13.30028 -13.25461 -12.94853 -12.67301 -12.38951 -12.12797 -12.09311 -12.03463 -11.99180 -11.68718 -11.58652 -11.51779 -11.48646 -10.43897 -10.31930 -9.99527 -9.76099 -9.28388 -8.45393 -5.93900 1.23303 1.30027 1.38178 1.43941 1.57609 1.57706 1.80676 2.07735 2.30503 2.50496 2.92090 3.01360 3.14336 3.22522 3.51635 3.60522 3.68185 3.80250 3.95406 4.04510 4.33576 4.34842 4.36693 4.38059 4.42059 4.43201 4.51214 4.59984 4.63973 4.77532 4.84667 4.92694 5.01958 5.14931 5.25031 5.40090 5.43067 5.60802 5.90623 6.02944 6.12191 6.33836 6.49198 6.61764 6.81762 6.92532 7.14551 7.58794 8.13536 8.72106 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.041955 B = 0.001531 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.218292 B =18286.254137 C =18689.393222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.080 0.920 9 N -0.575 5.575 10 C 0.438 3.562 11 O -0.622 6.622 12 C 0.064 3.936 13 N -0.681 5.681 14 C 0.072 3.928 15 C -0.090 4.090 16 H 0.085 0.915 17 C -0.130 4.130 18 C 0.090 3.910 19 N -0.606 5.606 20 C 0.514 3.486 21 O -0.574 6.574 22 C 0.088 3.912 23 H 0.178 0.822 24 C 0.049 3.951 25 O -0.339 6.339 26 C 0.648 3.352 27 O -0.570 6.570 28 N -0.702 5.702 29 C 0.113 3.887 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.348 0.652 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.171 0.829 42 H 0.113 0.887 43 H 0.445 0.555 44 H 0.065 0.935 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.178 -21.356 8.143 23.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.098 0.902 9 N -0.212 5.212 10 C 0.226 3.774 11 O -0.508 6.508 12 C -0.068 4.068 13 N -0.314 5.314 14 C -0.057 4.057 15 C -0.110 4.110 16 H 0.104 0.896 17 C -0.168 4.168 18 C -0.031 4.031 19 N -0.339 5.339 20 C 0.301 3.699 21 O -0.453 6.453 22 C -0.021 4.021 23 H 0.195 0.805 24 C -0.025 4.025 25 O -0.248 6.248 26 C 0.401 3.599 27 O -0.458 6.458 28 N -0.374 5.374 29 C -0.010 4.010 30 H 0.086 0.914 31 H 0.230 0.770 32 H 0.119 0.881 33 H 0.086 0.914 34 H 0.167 0.833 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.188 0.812 42 H 0.131 0.869 43 H 0.290 0.710 44 H 0.083 0.917 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.851 -22.154 6.785 23.897 hybrid contribution -1.338 0.917 0.700 1.767 sum 4.513 -21.237 7.485 22.965 Atomic orbital electron populations 1.69677 1.06836 1.29177 1.50508 1.26024 0.96510 1.02399 0.96349 0.84877 0.78111 0.77181 0.78214 1.19674 1.19866 1.19659 1.19715 0.92750 0.84041 1.49729 0.90183 1.41955 1.09349 1.04787 1.65114 1.20910 0.88292 0.86167 0.82078 1.90488 1.15766 1.87975 1.56590 1.21523 0.94074 0.88130 1.03068 1.59995 1.19147 1.00644 1.51614 1.21891 0.95219 0.87053 1.01580 1.22181 0.97235 0.91751 0.99822 0.89612 1.22757 1.01484 0.95804 0.96789 1.22509 0.93700 0.90265 0.96609 1.48524 1.31604 1.05173 1.48605 1.20691 0.86243 0.81504 0.81427 1.90787 1.42664 1.71052 1.40829 1.22581 0.93256 0.81433 1.04870 0.80524 1.24758 0.96122 0.79623 1.01970 1.87287 1.44289 1.21347 1.71891 1.18569 0.79227 0.85319 0.76757 1.91053 1.78765 1.12348 1.63678 1.45675 1.27232 1.07249 1.57195 1.22161 0.91988 0.88053 0.98822 0.91375 0.77016 0.88117 0.91420 0.83263 0.90707 0.93541 0.89886 0.88906 0.87707 0.88193 0.81194 0.86905 0.71045 0.91677 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.43 13.05 21.66 0.28 -48.15 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 3 Si 0.99 41.67 29.55 68.60 2.03 43.69 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 7 C -0.33 -18.30 9.68 84.04 0.81 -17.48 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.57 -28.21 5.29 -306.98 -1.62 -29.84 16 10 C 0.44 19.50 7.82 87.66 0.69 20.19 16 11 O -0.62 -32.37 15.78 -3.08 -0.05 -32.42 16 12 C 0.06 1.96 6.17 85.56 0.53 2.49 16 13 N -0.68 -17.57 6.12 -517.93 -3.17 -20.74 16 14 C 0.07 1.21 5.19 86.30 0.45 1.66 16 15 C -0.09 -1.14 3.28 -9.48 -0.03 -1.17 16 16 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 17 C -0.13 -1.00 5.63 31.78 0.18 -0.82 16 18 C 0.09 0.23 6.31 86.73 0.55 0.77 16 19 N -0.61 -5.68 3.33 -812.22 -2.70 -8.38 16 20 C 0.51 6.68 6.98 87.66 0.61 7.29 16 21 O -0.57 -13.77 16.82 -3.03 -0.05 -13.82 16 22 C 0.09 0.50 3.51 44.50 0.16 0.66 16 23 H 0.18 -0.66 7.71 -2.39 -0.02 -0.68 16 24 C 0.05 0.23 7.68 72.35 0.56 0.79 16 25 O -0.34 -5.62 11.09 -47.35 -0.53 -6.14 16 26 C 0.65 13.48 9.16 129.91 1.19 14.66 16 27 O -0.57 -17.34 18.04 19.63 0.35 -16.99 16 28 N -0.70 -8.95 5.63 -573.42 -3.23 -12.17 16 29 C 0.11 1.43 6.37 86.78 0.55 1.99 16 30 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 31 H 0.40 18.47 7.90 -92.71 -0.73 17.74 16 32 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.35 9.05 7.65 -89.69 -0.69 8.37 16 35 H 0.07 1.29 8.14 -2.38 -0.02 1.28 16 36 H 0.05 0.67 8.11 -2.39 -0.02 0.65 16 37 H 0.08 0.61 8.01 -2.39 -0.02 0.59 16 38 H 0.09 0.80 8.12 -2.39 -0.02 0.78 16 39 H 0.10 -0.27 8.01 -2.38 -0.02 -0.29 16 40 H 0.10 -0.19 7.95 -2.38 -0.02 -0.21 16 41 H 0.17 -0.80 8.14 -2.39 -0.02 -0.82 16 42 H 0.11 0.52 7.73 -2.39 -0.02 0.50 16 43 H 0.44 4.86 8.96 -92.71 -0.83 4.03 16 44 H 0.06 1.08 8.04 -2.39 -0.02 1.06 16 45 H 0.08 0.93 8.03 -2.39 -0.02 0.91 16 Total: -1.00 -85.06 381.69 -3.17 -88.23 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: -1.19 Total: 25.92 kcal Atomic # 6 Polarization: 24.10 SS G_CDS: 6.70 Total: 30.81 kcal Atomic # 7 Polarization: -108.83 SS G_CDS: -10.44 Total: -119.28 kcal Atomic # 8 Polarization: -69.10 SS G_CDS: -0.27 Total: -69.37 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Total: -85.06 -3.17 -88.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714348557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.304 kcal (2) G-P(sol) polarization free energy of solvation -85.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds