Wall clock time and date at job start Sat Apr 11 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99516 * 2 1 4 4 H 1.09005 * 109.47234 * 30.00586 * 3 2 1 5 5 C 1.53008 * 109.46729 * 150.00107 * 3 2 1 6 6 C 1.50700 * 109.47286 * 295.00000 * 5 3 2 7 7 O 1.21288 * 119.99743 * 0.02562 * 6 5 3 8 8 N 1.34766 * 120.00036 * 180.27466 * 6 5 3 9 9 C 1.46508 * 120.00184 * 179.72749 * 8 6 5 10 10 C 1.53003 * 109.47112 * 180.02562 * 9 8 6 11 11 H 1.09005 * 109.50858 * 304.89222 * 10 9 8 12 12 C 1.53298 * 109.50940 * 184.74777 * 10 9 8 13 13 N 1.47151 * 108.38033 * 187.77102 * 12 10 9 14 14 C 1.36929 * 120.98094 * 230.55129 * 13 12 10 15 15 H 1.08001 * 120.00019 * 26.21747 * 14 13 12 16 16 C 1.38817 * 120.00451 * 206.22216 * 14 13 12 17 17 N 1.31619 * 119.99335 * 16.91150 * 16 14 13 18 18 Si 1.86798 * 120.00292 * 196.91803 * 16 14 13 19 19 H 1.48499 * 109.47498 * 89.99546 * 18 16 14 20 20 H 1.48497 * 109.46874 * 209.99780 * 18 16 14 21 21 H 1.48496 * 109.46839 * 329.99491 * 18 16 14 22 22 C 1.47151 * 118.03497 * 50.53558 * 13 12 10 23 23 C 1.53292 * 108.38467 * 309.45918 * 22 13 12 24 24 O 1.42954 * 109.51445 * 64.99813 * 10 9 8 25 25 C 1.52995 * 109.47543 * 270.00348 * 3 2 1 26 26 F 1.39899 * 109.46893 * 300.00340 * 25 3 2 27 27 F 1.39894 * 109.47113 * 59.99833 * 25 3 2 28 28 F 1.39898 * 109.47387 * 180.02562 * 25 3 2 29 29 H 1.09000 * 109.46808 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47225 * 299.99498 * 1 2 3 31 31 H 1.08998 * 109.47611 * 59.99604 * 1 2 3 32 32 H 1.09002 * 109.46792 * 175.00326 * 5 3 2 33 33 H 1.08998 * 109.46602 * 54.99994 * 5 3 2 34 34 H 0.97002 * 120.00369 * 359.72297 * 8 6 5 35 35 H 1.09003 * 109.46634 * 300.00140 * 9 8 6 36 36 H 1.09002 * 109.47026 * 59.99919 * 9 8 6 37 37 H 1.09002 * 109.67915 * 307.49403 * 12 10 9 38 38 H 1.08997 * 109.68412 * 68.04943 * 12 10 9 39 39 H 0.97002 * 119.99566 * 180.02562 * 17 16 14 40 40 H 1.09006 * 109.68129 * 189.73730 * 22 13 12 41 41 H 1.09000 * 109.71776 * 69.20542 * 22 13 12 42 42 H 1.08999 * 109.51625 * 292.37937 * 23 22 13 43 43 H 1.09001 * 109.51358 * 172.22765 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 3.3589 1.2633 0.7213 6 6 3.1417 0.9236 2.1733 7 8 2.0186 0.7334 2.5902 8 7 4.1947 0.8360 3.0097 9 6 3.9830 0.5116 4.4227 10 6 5.3312 0.4755 5.1452 11 1 5.9983 -0.2206 4.6366 12 6 5.1234 0.0208 6.5944 13 7 6.3969 0.1736 7.3158 14 6 6.9185 -0.8570 8.0511 15 1 6.6738 -1.8783 7.7988 16 6 7.7616 -0.5893 9.1209 17 7 7.8023 0.6194 9.6401 18 14 8.8385 -1.9444 9.8232 19 1 10.1449 -1.9546 9.1173 20 1 9.0602 -1.7001 11.2711 21 1 8.1665 -3.2558 9.6398 22 6 7.0933 1.4666 7.2233 23 6 7.2051 1.8507 5.7435 24 8 5.9108 1.7823 5.1404 25 6 2.2175 1.7715 -1.4424 26 9 3.0714 0.8810 -2.1020 27 9 0.9843 1.8100 -2.1019 28 9 2.7870 3.0494 -1.4424 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 3.8426 2.2371 0.6444 33 1 3.9930 0.5052 0.2617 34 1 5.0929 0.9877 2.6763 35 1 3.3472 1.2707 4.8784 36 1 3.5008 -0.4626 4.5035 37 1 4.3579 0.6368 7.0662 38 1 4.8155 -1.0247 6.6105 39 1 8.3917 0.8066 10.3874 40 1 8.0899 1.3785 7.6560 41 1 6.5268 2.2285 7.7586 42 1 7.8795 1.1596 5.2378 43 1 7.5928 2.8660 5.6592 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714479385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:56 Heat of formation + Delta-G solvation = -255.576918 kcal Electronic energy + Delta-G solvation = -30366.174614 eV Core-core repulsion = 25418.606779 eV Total energy + Delta-G solvation = -4947.567835 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.48568 -48.03265 -47.92915 -40.07115 -38.70286 -38.09788 -34.96822 -34.33175 -32.96129 -31.57797 -30.71138 -28.13138 -27.13416 -26.83088 -25.27661 -23.25672 -22.81855 -21.79188 -20.68049 -19.68618 -19.07287 -18.89715 -18.43980 -17.13006 -16.99252 -16.61686 -16.23407 -16.03791 -15.33220 -15.17448 -15.01277 -14.79290 -14.68992 -14.64517 -14.43694 -14.36891 -14.16890 -14.09322 -13.99298 -13.72487 -13.27611 -13.15686 -13.00332 -12.72650 -12.58006 -12.26215 -12.11111 -11.65759 -11.59549 -11.16553 -10.90197 -10.77314 -10.46250 -10.29471 -10.25596 -10.06992 -10.00029 -9.70438 -9.12754 -9.06289 -8.59019 -6.81070 -5.88892 -3.32862 2.19651 2.52908 2.94862 2.99386 3.31487 3.36076 3.38674 3.39943 3.61211 3.89965 4.17235 4.28335 4.38991 4.45772 4.77009 4.93786 4.97332 5.08268 5.12701 5.20148 5.28596 5.42686 5.43652 5.46452 5.74525 5.80349 5.97212 6.09545 6.22883 6.31620 6.42919 6.43846 6.44543 6.69807 7.04989 7.43039 7.46891 7.66385 7.79493 8.12292 8.28526 9.06610 9.69170 10.25734 11.19230 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.027339 B = 0.002043 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.935152 B =13698.735413 C =14071.708824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.347 6.347 3 C 0.069 3.931 4 H 0.116 0.884 5 C -0.148 4.148 6 C 0.522 3.478 7 O -0.537 6.537 8 N -0.718 5.718 9 C 0.131 3.869 10 C 0.064 3.936 11 H 0.059 0.941 12 C 0.122 3.878 13 N -0.594 5.594 14 C -0.256 4.256 15 H 0.069 0.931 16 C 0.002 3.998 17 N -0.903 5.903 18 Si 0.906 3.094 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.278 1.278 22 C 0.139 3.861 23 C 0.040 3.960 24 O -0.390 6.390 25 C 0.429 3.571 26 F -0.175 7.175 27 F -0.182 7.182 28 F -0.179 7.179 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.404 0.596 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.030 0.970 38 H 0.064 0.936 39 H 0.255 0.745 40 H 0.094 0.906 41 H 0.028 0.972 42 H 0.041 0.959 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.988 3.225 -21.854 24.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.264 6.264 3 C 0.008 3.992 4 H 0.133 0.867 5 C -0.188 4.188 6 C 0.307 3.693 7 O -0.414 6.414 8 N -0.369 5.369 9 C 0.008 3.992 10 C 0.004 3.996 11 H 0.077 0.923 12 C -0.005 4.005 13 N -0.318 5.318 14 C -0.386 4.386 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.547 5.547 18 Si 0.736 3.264 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.013 3.987 23 C -0.038 4.038 24 O -0.310 6.310 25 C 0.374 3.626 26 F -0.156 7.156 27 F -0.163 7.163 28 F -0.161 7.161 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.239 0.761 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.113 0.887 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.683 3.111 -21.465 24.178 hybrid contribution 1.091 -0.428 0.124 1.179 sum -9.592 2.684 -21.341 23.551 Atomic orbital electron populations 1.23085 0.79333 1.03965 1.01072 1.88056 1.21444 1.23118 1.93817 1.22913 0.98428 0.89816 0.88040 0.86661 1.21817 0.96327 1.06367 0.94282 1.19948 0.85070 0.77277 0.87015 1.90713 1.23154 1.49776 1.77774 1.45894 1.09728 1.71316 1.09940 1.21439 0.96853 1.01779 0.79169 1.22814 0.92806 0.85909 0.98030 0.92293 1.21440 0.90048 0.99413 0.89649 1.44071 1.19224 1.12085 1.56399 1.19210 1.25180 0.86857 1.07308 0.91282 1.25058 1.01752 0.96839 0.95998 1.70035 1.39566 1.20200 1.24868 0.86227 0.80763 0.81375 0.78031 1.21355 1.21655 1.20351 1.21449 0.99862 0.86904 0.90468 1.23328 0.83338 1.00319 0.96812 1.87780 1.33861 1.28720 1.80595 1.21521 0.74173 0.75417 0.91468 1.93201 1.70945 1.68103 1.83382 1.93163 1.43384 1.96191 1.83608 1.93199 1.85162 1.40769 1.96966 0.88723 0.92399 0.93208 0.86188 0.86565 0.76117 0.90591 0.90017 0.95228 0.91753 0.93459 0.88750 0.95355 0.94071 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.70 101.05 1.08 1.26 16 2 O -0.35 -3.65 9.51 -49.66 -0.47 -4.12 16 3 C 0.07 0.62 1.72 -26.73 -0.05 0.57 16 4 H 0.12 0.96 7.60 -51.93 -0.39 0.56 16 5 C -0.15 -1.22 5.17 -27.88 -0.14 -1.36 16 6 C 0.52 6.11 7.71 -10.99 -0.08 6.03 16 7 O -0.54 -8.03 15.42 -8.88 -0.14 -8.17 16 8 N -0.72 -8.35 5.50 -60.29 -0.33 -8.69 16 9 C 0.13 1.84 5.35 -4.04 -0.02 1.81 16 10 C 0.06 1.06 2.81 -26.58 -0.07 0.98 16 11 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 12 C 0.12 2.45 6.02 -3.53 -0.02 2.43 16 13 N -0.59 -14.49 3.05 -171.83 -0.52 -15.01 16 14 C -0.26 -6.83 9.65 -15.06 -0.15 -6.97 16 15 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 16 C 0.00 0.06 4.95 -17.43 -0.09 -0.02 16 17 N -0.90 -25.57 11.14 55.49 0.62 -24.95 16 18 Si 0.91 21.12 29.59 -169.99 -5.03 16.09 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 C 0.14 3.21 5.44 -3.54 -0.02 3.19 16 23 C 0.04 0.73 6.98 37.31 0.26 0.99 16 24 O -0.39 -6.90 10.33 -35.23 -0.36 -7.27 16 25 C 0.43 3.76 2.85 37.15 0.11 3.87 16 26 F -0.17 -1.69 16.83 2.25 0.04 -1.65 16 27 F -0.18 -1.67 15.50 2.25 0.03 -1.64 16 28 F -0.18 -1.54 16.71 2.25 0.04 -1.50 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.05 0.36 6.49 -51.93 -0.34 0.02 16 32 H 0.12 0.72 7.66 -51.93 -0.40 0.32 16 33 H 0.12 0.83 7.94 -51.93 -0.41 0.41 16 34 H 0.40 3.96 8.47 -40.82 -0.35 3.62 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 1.23 7.96 -51.93 -0.41 0.82 16 39 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.09 2.40 6.14 -51.93 -0.32 2.09 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -31.64 365.95 -5.78 -37.42 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.97 Total: 1.19 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 0.80 Total: 12.78 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.24 Total: -48.65 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.97 Total: -19.56 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.11 Total: -4.79 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.64 -5.78 -37.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714479385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -218.160 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -255.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds