Wall clock time and date at job start Sat Apr 11 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99516 * 2 1 4 4 H 1.09005 * 109.47234 * 30.00586 * 3 2 1 5 5 C 1.53008 * 109.46729 * 150.00107 * 3 2 1 6 6 C 1.50700 * 109.47286 * 295.00000 * 5 3 2 7 7 O 1.21288 * 119.99743 * 0.02562 * 6 5 3 8 8 N 1.34766 * 120.00036 * 180.27466 * 6 5 3 9 9 C 1.46508 * 120.00184 * 179.72749 * 8 6 5 10 10 C 1.53003 * 109.47112 * 180.02562 * 9 8 6 11 11 H 1.09005 * 109.50858 * 304.89222 * 10 9 8 12 12 C 1.53298 * 109.50940 * 184.74777 * 10 9 8 13 13 N 1.47151 * 108.38033 * 187.77102 * 12 10 9 14 14 C 1.36929 * 120.98094 * 230.55129 * 13 12 10 15 15 H 1.08001 * 120.00019 * 26.21747 * 14 13 12 16 16 C 1.38817 * 120.00451 * 206.22216 * 14 13 12 17 17 N 1.31619 * 119.99335 * 16.91150 * 16 14 13 18 18 Si 1.86798 * 120.00292 * 196.91803 * 16 14 13 19 19 H 1.48499 * 109.47498 * 89.99546 * 18 16 14 20 20 H 1.48497 * 109.46874 * 209.99780 * 18 16 14 21 21 H 1.48496 * 109.46839 * 329.99491 * 18 16 14 22 22 C 1.47151 * 118.03497 * 50.53558 * 13 12 10 23 23 C 1.53292 * 108.38467 * 309.45918 * 22 13 12 24 24 O 1.42954 * 109.51445 * 64.99813 * 10 9 8 25 25 C 1.52995 * 109.47543 * 270.00348 * 3 2 1 26 26 F 1.39899 * 109.46893 * 300.00340 * 25 3 2 27 27 F 1.39894 * 109.47113 * 59.99833 * 25 3 2 28 28 F 1.39898 * 109.47387 * 180.02562 * 25 3 2 29 29 H 1.09000 * 109.46808 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47225 * 299.99498 * 1 2 3 31 31 H 1.08998 * 109.47611 * 59.99604 * 1 2 3 32 32 H 1.09002 * 109.46792 * 175.00326 * 5 3 2 33 33 H 1.08998 * 109.46602 * 54.99994 * 5 3 2 34 34 H 0.97002 * 120.00369 * 359.72297 * 8 6 5 35 35 H 1.09003 * 109.46634 * 300.00140 * 9 8 6 36 36 H 1.09002 * 109.47026 * 59.99919 * 9 8 6 37 37 H 1.09002 * 109.67915 * 307.49403 * 12 10 9 38 38 H 1.08997 * 109.68412 * 68.04943 * 12 10 9 39 39 H 0.97002 * 119.99566 * 180.02562 * 17 16 14 40 40 H 1.09006 * 109.68129 * 189.73730 * 22 13 12 41 41 H 1.09000 * 109.71776 * 69.20542 * 22 13 12 42 42 H 1.08999 * 109.51625 * 292.37937 * 23 22 13 43 43 H 1.09001 * 109.51358 * 172.22765 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 3.3589 1.2633 0.7213 6 6 3.1417 0.9236 2.1733 7 8 2.0186 0.7334 2.5902 8 7 4.1947 0.8360 3.0097 9 6 3.9830 0.5116 4.4227 10 6 5.3312 0.4755 5.1452 11 1 5.9983 -0.2206 4.6366 12 6 5.1234 0.0208 6.5944 13 7 6.3969 0.1736 7.3158 14 6 6.9185 -0.8570 8.0511 15 1 6.6738 -1.8783 7.7988 16 6 7.7616 -0.5893 9.1209 17 7 7.8023 0.6194 9.6401 18 14 8.8385 -1.9444 9.8232 19 1 10.1449 -1.9546 9.1173 20 1 9.0602 -1.7001 11.2711 21 1 8.1665 -3.2558 9.6398 22 6 7.0933 1.4666 7.2233 23 6 7.2051 1.8507 5.7435 24 8 5.9108 1.7823 5.1404 25 6 2.2175 1.7715 -1.4424 26 9 3.0714 0.8810 -2.1020 27 9 0.9843 1.8100 -2.1019 28 9 2.7870 3.0494 -1.4424 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 3.8426 2.2371 0.6444 33 1 3.9930 0.5052 0.2617 34 1 5.0929 0.9877 2.6763 35 1 3.3472 1.2707 4.8784 36 1 3.5008 -0.4626 4.5035 37 1 4.3579 0.6368 7.0662 38 1 4.8155 -1.0247 6.6105 39 1 8.3917 0.8066 10.3874 40 1 8.0899 1.3785 7.6560 41 1 6.5268 2.2285 7.7586 42 1 7.8795 1.1596 5.2378 43 1 7.5928 2.8660 5.6592 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714479385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:56 Heat of formation + Delta-G solvation = -277.552917 kcal Electronic energy + Delta-G solvation = -30367.127565 eV Core-core repulsion = 25418.606779 eV Total energy + Delta-G solvation = -4948.520786 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.17404 -48.71777 -48.62622 -41.03021 -40.06854 -38.96634 -36.49320 -35.72669 -33.74923 -33.29767 -32.24338 -29.43157 -28.40061 -27.48646 -26.70553 -24.96472 -23.78581 -23.05477 -21.78778 -21.11578 -19.77220 -19.65113 -19.13082 -18.88356 -17.82268 -17.69428 -17.31786 -17.21778 -16.83156 -16.23955 -16.07163 -16.00349 -15.52131 -15.49762 -15.43377 -15.36148 -15.11500 -15.07585 -14.98871 -14.79706 -14.78704 -14.57076 -14.27453 -13.96599 -13.30173 -13.19403 -13.15524 -12.99380 -12.81502 -12.68440 -12.52454 -12.30344 -12.15818 -12.07016 -11.86701 -11.33916 -11.00342 -10.92737 -10.78742 -10.53961 -10.08617 -8.75996 -7.91636 -5.39079 1.47174 1.48020 1.49482 1.57246 1.63866 2.11811 2.29805 2.47747 2.67355 2.78976 2.89964 3.22998 3.23409 3.49942 3.58725 3.78897 3.96746 4.02297 4.11311 4.27933 4.34974 4.38461 4.49386 4.51550 4.54554 4.59490 4.64733 4.73032 4.79981 4.83123 4.91573 5.07727 5.25329 5.40635 5.55736 5.61530 5.78438 6.25913 6.33429 6.54470 7.05995 7.22929 7.74180 8.27361 9.14268 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.027339 B = 0.002043 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.935152 B =13698.735413 C =14071.708824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.367 6.367 3 C 0.067 3.933 4 H 0.119 0.881 5 C -0.141 4.141 6 C 0.521 3.479 7 O -0.572 6.572 8 N -0.712 5.712 9 C 0.143 3.857 10 C 0.079 3.921 11 H 0.070 0.930 12 C 0.116 3.884 13 N -0.614 5.614 14 C -0.266 4.266 15 H 0.073 0.927 16 C -0.051 4.051 17 N -0.936 5.936 18 Si 0.971 3.029 19 H -0.282 1.282 20 H -0.297 1.297 21 H -0.268 1.268 22 C 0.142 3.858 23 C 0.055 3.945 24 O -0.388 6.388 25 C 0.435 3.565 26 F -0.179 7.179 27 F -0.185 7.185 28 F -0.177 7.177 29 H 0.103 0.897 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.147 0.853 33 H 0.132 0.868 34 H 0.416 0.584 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.017 0.983 38 H 0.071 0.929 39 H 0.251 0.749 40 H 0.067 0.933 41 H -0.002 1.002 42 H 0.052 0.948 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.649 2.844 -23.882 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.285 6.285 3 C 0.006 3.994 4 H 0.137 0.863 5 C -0.180 4.180 6 C 0.308 3.692 7 O -0.451 6.451 8 N -0.364 5.364 9 C 0.018 3.982 10 C 0.019 3.981 11 H 0.088 0.912 12 C -0.010 4.010 13 N -0.338 5.338 14 C -0.395 4.395 15 H 0.091 0.909 16 C -0.246 4.246 17 N -0.582 5.582 18 Si 0.799 3.201 19 H -0.209 1.209 20 H -0.223 1.223 21 H -0.193 1.193 22 C 0.016 3.984 23 C -0.023 4.023 24 O -0.307 6.307 25 C 0.380 3.620 26 F -0.161 7.161 27 F -0.167 7.167 28 F -0.158 7.158 29 H 0.122 0.878 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.165 0.835 33 H 0.150 0.850 34 H 0.253 0.747 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.035 0.965 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.016 0.984 42 H 0.070 0.930 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.345 2.730 -23.540 25.858 hybrid contribution 0.901 -0.302 0.758 1.216 sum -9.444 2.428 -22.782 24.781 Atomic orbital electron populations 1.23177 0.78552 1.04709 1.01247 1.88021 1.22440 1.24086 1.93915 1.22999 0.98854 0.89452 0.88128 0.86302 1.21858 0.96435 1.08322 0.91433 1.20482 0.84291 0.76196 0.88188 1.90705 1.24537 1.51259 1.78642 1.45772 1.10570 1.71188 1.08830 1.21149 0.94878 1.01728 0.80416 1.22651 0.94184 0.85516 0.95728 0.91194 1.21612 0.88090 0.99875 0.91470 1.44356 1.20850 1.11913 1.56687 1.19557 1.24973 0.87702 1.07304 0.90949 1.25831 1.03205 0.98911 0.96664 1.70193 1.40438 1.22111 1.25450 0.85207 0.79066 0.79121 0.76686 1.20852 1.22328 1.19293 1.21326 0.97657 0.85895 0.93516 1.23147 0.83943 1.02095 0.93103 1.87797 1.33584 1.29383 1.79952 1.21437 0.73946 0.75363 0.91230 1.93193 1.71078 1.68318 1.83501 1.93156 1.43632 1.96204 1.83671 1.93206 1.85093 1.40579 1.96945 0.87822 0.92974 0.92228 0.83490 0.84988 0.74738 0.91866 0.89557 0.96492 0.91054 0.93944 0.91509 0.98375 0.93001 0.87285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.70 113.37 1.21 1.50 16 2 O -0.37 -7.18 9.51 -135.18 -1.29 -8.47 16 3 C 0.07 1.06 1.72 30.60 0.05 1.11 16 4 H 0.12 1.79 7.60 -2.38 -0.02 1.77 16 5 C -0.14 -1.93 5.17 29.85 0.15 -1.78 16 6 C 0.52 11.11 7.71 87.66 0.68 11.78 16 7 O -0.57 -16.41 15.42 10.74 0.17 -16.25 16 8 N -0.71 -14.80 5.50 -463.04 -2.55 -17.35 16 9 C 0.14 3.76 5.35 86.38 0.46 4.22 16 10 C 0.08 2.46 2.81 30.69 0.09 2.54 16 11 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 12 C 0.12 4.62 6.02 86.35 0.52 5.14 16 13 N -0.61 -30.09 3.05 -697.54 -2.13 -32.22 16 14 C -0.27 -14.20 9.65 84.04 0.81 -13.39 16 15 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 16 C -0.05 -2.76 4.95 84.86 0.42 -2.34 16 17 N -0.94 -54.35 11.14 21.65 0.24 -54.11 16 18 Si 0.97 43.63 29.59 68.60 2.03 45.66 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 22 C 0.14 6.65 5.44 86.35 0.47 7.12 16 23 C 0.05 1.92 6.98 72.08 0.50 2.42 16 24 O -0.39 -12.92 10.33 -148.98 -1.54 -14.46 16 25 C 0.43 6.75 2.85 71.98 0.21 6.96 16 26 F -0.18 -3.09 16.83 44.97 0.76 -2.33 16 27 F -0.19 -3.11 15.50 44.97 0.70 -2.41 16 28 F -0.18 -2.62 16.71 44.97 0.75 -1.86 16 29 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 0.85 8.08 -2.39 -0.02 0.83 16 31 H 0.06 0.78 6.49 -2.39 -0.02 0.77 16 32 H 0.15 1.23 7.66 -2.39 -0.02 1.21 16 33 H 0.13 1.44 7.94 -2.39 -0.02 1.43 16 34 H 0.42 6.79 8.47 -92.71 -0.79 6.00 16 35 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 2.69 7.96 -2.39 -0.02 2.68 16 39 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 40 H 0.07 3.49 6.14 -2.38 -0.01 3.47 16 41 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -68.52 365.95 2.98 -65.54 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.26 Total: 12.95 kcal Atomic # 6 Polarization: 19.73 SS G_CDS: 5.57 Total: 25.30 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -4.43 Total: -103.67 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -2.66 Total: -39.18 kcal Atomic # 9 Polarization: -8.81 SS G_CDS: 2.21 Total: -6.61 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -68.52 2.98 -65.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714479385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -212.010 kcal (2) G-P(sol) polarization free energy of solvation -68.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -280.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -277.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds