Wall clock time and date at job start Sat Apr 11 2020 06:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 119.99717 * 2 1 4 4 H 1.48496 * 109.47330 * 273.79707 * 3 2 1 5 5 H 1.48501 * 109.47261 * 33.79879 * 3 2 1 6 6 H 1.48497 * 109.47348 * 153.79884 * 3 2 1 7 7 C 1.38814 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00267 * 351.40965 * 7 2 1 9 9 N 1.36933 * 119.99569 * 171.40801 * 7 2 1 10 10 C 1.47753 * 125.82228 * 315.42720 * 9 7 2 11 11 C 1.54916 * 104.83822 * 155.83533 * 10 9 7 12 12 C 1.55153 * 101.58319 * 37.09186 * 11 10 9 13 13 C 1.47021 * 125.64788 * 135.52750 * 9 7 2 14 14 H 1.09001 * 109.87846 * 300.58894 * 13 9 7 15 15 C 1.52996 * 109.88619 * 61.60497 * 13 9 7 16 16 C 1.53006 * 109.46874 * 285.21945 * 15 13 9 17 17 C 1.53001 * 109.47249 * 185.91061 * 16 15 13 18 18 N 1.46494 * 109.47356 * 180.02562 * 17 16 15 19 19 C 1.34772 * 120.00032 * 180.02562 * 18 17 16 20 20 O 1.21284 * 120.00347 * 359.97438 * 19 18 17 21 21 C 1.50697 * 120.00082 * 179.97438 * 19 18 17 22 22 N 1.46505 * 109.47413 * 179.97438 * 21 19 18 23 23 C 1.35048 * 126.03253 * 124.71240 * 22 21 19 24 24 C 1.35381 * 107.72406 * 180.26531 * 23 22 21 25 25 Cl 1.73598 * 126.04425 * 180.02562 * 24 23 22 26 26 C 1.39933 * 107.90640 * 0.02562 * 24 23 22 27 27 N 1.30846 * 108.21528 * 0.02562 * 26 24 23 28 28 H 0.97002 * 120.00305 * 0.02562 * 1 2 3 29 29 H 1.08995 * 110.29165 * 37.03064 * 10 9 7 30 30 H 1.08995 * 110.43685 * 274.71119 * 10 9 7 31 31 H 1.09008 * 110.99926 * 279.02021 * 11 10 9 32 32 H 1.08996 * 111.03819 * 155.18576 * 11 10 9 33 33 H 1.08996 * 110.72112 * 206.13477 * 12 11 10 34 34 H 1.09002 * 110.71745 * 82.86441 * 12 11 10 35 35 H 1.08999 * 109.47420 * 165.21469 * 15 13 9 36 36 H 1.09004 * 109.47362 * 45.21134 * 15 13 9 37 37 H 1.08994 * 109.47290 * 65.90368 * 16 15 13 38 38 H 1.09005 * 109.46775 * 305.90711 * 16 15 13 39 39 H 1.09000 * 109.47008 * 59.99037 * 17 16 15 40 40 H 1.09007 * 109.46452 * 299.99686 * 17 16 15 41 41 H 0.96999 * 120.00017 * 359.97438 * 18 17 16 42 42 H 1.09000 * 109.47633 * 59.99580 * 21 19 18 43 43 H 1.09004 * 109.47628 * 299.99706 * 21 19 18 44 44 H 1.07994 * 126.14113 * 0.24739 * 23 22 21 45 45 H 1.07999 * 125.89117 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4173 2.0928 -1.3969 5 1 1.4900 2.6281 0.7788 6 1 3.5855 1.4184 0.6181 7 6 2.0103 -1.2022 0.0005 8 1 1.4795 -2.1322 0.1407 9 7 3.3681 -1.2088 -0.1766 10 6 4.1126 -0.4251 -1.1840 11 6 5.5408 -0.2841 -0.6007 12 6 5.7404 -1.6677 0.0725 13 6 4.3302 -2.0001 0.6041 14 1 4.2595 -1.7342 1.6588 15 6 4.0446 -3.4923 0.4236 16 6 2.7996 -3.8740 1.2270 17 6 2.5985 -5.3896 1.1667 18 7 1.4062 -5.7550 1.9353 19 6 1.0312 -7.0465 2.0240 20 8 1.6805 -7.9061 1.4670 21 6 -0.1950 -7.4224 2.8152 22 7 -0.3877 -8.8736 2.7573 23 6 -0.4954 -9.7036 3.8172 24 6 -0.6572 -10.9607 3.3414 25 17 -0.8438 -12.3982 4.2966 26 6 -0.6474 -10.8963 1.9436 27 7 -0.4851 -9.6462 1.5929 28 1 -0.4851 0.8400 -0.0004 29 1 3.6564 0.5565 -1.3119 30 1 4.1420 -0.9575 -2.1346 31 1 5.5845 0.5186 0.1356 32 1 6.2729 -0.1255 -1.3924 33 1 6.4551 -1.5981 0.8924 34 1 6.0617 -2.4095 -0.6587 35 1 4.8975 -4.0711 0.7783 36 1 3.8750 -3.7048 -0.6319 37 1 1.9276 -3.3747 0.8049 38 1 2.9281 -3.5656 2.2646 39 1 3.4707 -5.8889 1.5887 40 1 2.4700 -5.6979 0.1290 41 1 0.8870 -5.0675 2.3811 42 1 -1.0672 -6.9234 2.3928 43 1 -0.0669 -7.1137 3.8527 44 1 -0.4587 -9.4162 4.8575 45 1 -0.7545 -11.7340 1.2705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714527989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:02 Heat of formation + Delta-G solvation = 62.460690 kcal Electronic energy + Delta-G solvation = -26478.196340 eV Core-core repulsion = 22559.278307 eV Total energy + Delta-G solvation = -3918.918033 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -41.56227 -39.57366 -38.13919 -36.65691 -35.46644 -33.62702 -32.68052 -32.56496 -30.34548 -29.95493 -28.97563 -27.38783 -24.84722 -23.99126 -21.91388 -21.48500 -21.43872 -20.58642 -20.20328 -19.32987 -17.82835 -17.36214 -16.93389 -16.29450 -15.96230 -15.68659 -15.14159 -14.79591 -14.58945 -14.37711 -14.34320 -13.64508 -13.54402 -13.43442 -13.10946 -12.65530 -12.63779 -12.40452 -12.12132 -12.08332 -11.93727 -11.62022 -11.39621 -11.24652 -10.99866 -10.90895 -10.71966 -10.63477 -10.35763 -10.32471 -10.04378 -9.97011 -9.72571 -9.59944 -9.41927 -9.03279 -8.67980 -8.59037 -6.67663 -6.03140 -3.59920 1.42293 1.64975 2.39413 2.44488 2.49291 3.08584 3.27922 3.40507 3.46523 4.22596 4.37421 4.46185 4.52033 4.69179 4.75412 4.96361 5.12100 5.18202 5.20324 5.33282 5.40879 5.42754 5.52749 5.56233 5.73490 5.95027 5.97516 6.08882 6.10543 6.12801 6.25638 6.27241 6.34159 6.43098 6.44717 6.51701 6.62723 6.67350 6.84915 6.88354 7.04579 7.30427 7.41919 7.98659 8.09543 8.35539 8.80358 9.59896 10.26132 11.09333 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021920 B = 0.001886 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.088063 B =14846.154181 C =15705.432944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.035 3.965 3 Si 0.895 3.105 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.265 1.265 7 C -0.251 4.251 8 H 0.090 0.910 9 N -0.604 5.604 10 C 0.117 3.883 11 C -0.138 4.138 12 C -0.126 4.126 13 C 0.157 3.843 14 H 0.041 0.959 15 C -0.115 4.115 16 C -0.140 4.140 17 C 0.123 3.877 18 N -0.720 5.720 19 C 0.496 3.504 20 O -0.517 6.517 21 C 0.114 3.886 22 N -0.352 5.352 23 C 0.072 3.928 24 C -0.186 4.186 25 Cl -0.046 7.046 26 C 0.057 3.943 27 N -0.248 5.248 28 H 0.264 0.736 29 H 0.038 0.962 30 H 0.029 0.971 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.405 0.595 42 H 0.122 0.878 43 H 0.129 0.871 44 H 0.184 0.816 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.590 -15.581 9.184 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.165 4.165 3 Si 0.726 3.274 4 H -0.216 1.216 5 H -0.233 1.233 6 H -0.190 1.190 7 C -0.379 4.379 8 H 0.107 0.893 9 N -0.331 5.331 10 C -0.007 4.007 11 C -0.176 4.176 12 C -0.164 4.164 13 C 0.051 3.949 14 H 0.058 0.942 15 C -0.155 4.155 16 C -0.177 4.177 17 C 0.000 4.000 18 N -0.373 5.373 19 C 0.279 3.721 20 O -0.392 6.392 21 C -0.011 4.011 22 N -0.134 5.134 23 C -0.075 4.075 24 C -0.225 4.225 25 Cl -0.018 7.018 26 C -0.131 4.131 27 N -0.068 5.068 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.123 0.877 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.239 0.761 42 H 0.140 0.860 43 H 0.147 0.853 44 H 0.201 0.799 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 1.934 -15.236 7.895 17.269 hybrid contribution 0.034 0.713 0.952 1.190 sum 1.968 -14.523 8.847 17.119 Atomic orbital electron populations 1.69752 1.05867 1.26844 1.52583 1.25660 0.95197 0.98362 0.97324 0.86604 0.80080 0.83566 0.77142 1.21582 1.23278 1.18987 1.18668 0.79220 0.93263 1.46711 0.89299 1.44699 1.02449 1.51607 1.34297 1.21928 0.90470 0.95420 0.92855 1.22783 0.97703 0.97358 0.99781 1.22585 0.97143 0.96977 0.99696 1.21059 0.88264 0.90442 0.95133 0.94159 1.21891 0.95729 0.97758 1.00075 1.22147 1.02233 0.92122 1.01178 1.21527 0.85903 0.96935 0.95677 1.45995 1.30156 1.07348 1.53803 1.20377 0.86125 0.83374 0.82175 1.90792 1.54140 1.48813 1.45419 1.21624 0.99421 0.76364 1.03703 1.47855 1.55241 1.06378 1.03926 1.22208 1.01520 0.89363 0.94413 1.20734 1.21136 0.88511 0.92080 1.98322 1.96804 1.35653 1.71059 1.23933 1.00119 0.95591 0.93412 1.77684 1.20751 1.02296 1.06040 0.92635 0.94461 0.95357 0.91738 0.91902 0.91977 0.91689 0.93342 0.91955 0.87741 0.92128 0.92232 0.91675 0.76054 0.86010 0.85307 0.79932 0.79238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.42 13.97 55.49 0.78 -25.64 16 2 C 0.04 0.97 5.49 -17.43 -0.10 0.88 16 3 Si 0.89 21.88 24.81 -169.99 -4.22 17.66 16 4 H -0.29 -7.02 6.97 56.52 0.39 -6.63 16 5 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.26 -6.25 6.21 56.52 0.35 -5.90 16 7 C -0.25 -6.47 9.67 -15.06 -0.15 -6.62 16 8 H 0.09 2.37 5.09 -52.49 -0.27 2.10 16 9 N -0.60 -13.46 2.57 -162.31 -0.42 -13.88 16 10 C 0.12 2.44 6.08 -2.34 -0.01 2.42 16 11 C -0.14 -2.32 7.03 -24.58 -0.17 -2.49 16 12 C -0.13 -1.94 6.45 -24.90 -0.16 -2.10 16 13 C 0.16 2.87 3.19 -66.95 -0.21 2.66 16 14 H 0.04 0.77 8.03 -51.93 -0.42 0.35 16 15 C -0.11 -1.83 4.67 -26.73 -0.12 -1.96 16 16 C -0.14 -2.14 4.97 -26.73 -0.13 -2.28 16 17 C 0.12 1.71 5.67 -4.04 -0.02 1.69 16 18 N -0.72 -8.58 5.56 -60.30 -0.33 -8.91 16 19 C 0.50 6.32 7.86 -10.99 -0.09 6.24 16 20 O -0.52 -9.02 15.70 5.55 0.09 -8.93 16 21 C 0.11 0.98 6.99 -5.19 -0.04 0.94 16 22 N -0.35 -3.91 3.40 -62.50 -0.21 -4.12 16 23 C 0.07 0.66 11.43 -17.16 -0.20 0.46 16 24 C -0.19 -1.88 6.65 -39.97 -0.27 -2.15 16 25 Cl -0.05 -0.41 29.30 -51.86 -1.52 -1.93 16 26 C 0.06 0.64 12.02 -17.34 -0.21 0.44 16 27 N -0.25 -3.40 11.64 30.64 0.36 -3.04 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.04 0.84 3.63 -51.93 -0.19 0.65 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.13 7.57 -51.92 -0.39 0.73 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.92 7.85 -51.93 -0.41 0.52 16 35 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.10 1.96 4.67 -51.93 -0.24 1.71 16 38 H 0.06 0.89 8.07 -51.93 -0.42 0.47 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 41 H 0.40 3.88 8.47 -40.82 -0.35 3.54 16 42 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.13 0.55 8.07 -51.93 -0.42 0.14 16 44 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.19 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -34.20 376.40 -8.21 -42.40 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.52 Total: 2.60 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.88 Total: -1.88 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.17 Total: -55.59 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.22 Total: 17.66 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.52 Total: -1.93 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.20 -8.21 -42.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714527989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.863 kcal (2) G-P(sol) polarization free energy of solvation -34.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds