Wall clock time and date at job start Sat Apr 11 2020 06:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 119.99717 * 2 1 4 4 H 1.48496 * 109.47330 * 273.79707 * 3 2 1 5 5 H 1.48501 * 109.47261 * 33.79879 * 3 2 1 6 6 H 1.48497 * 109.47348 * 153.79884 * 3 2 1 7 7 C 1.38814 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00267 * 351.40965 * 7 2 1 9 9 N 1.36933 * 119.99569 * 171.40801 * 7 2 1 10 10 C 1.47753 * 125.82228 * 315.42720 * 9 7 2 11 11 C 1.54916 * 104.83822 * 155.83533 * 10 9 7 12 12 C 1.55153 * 101.58319 * 37.09186 * 11 10 9 13 13 C 1.47021 * 125.64788 * 135.52750 * 9 7 2 14 14 H 1.09001 * 109.87846 * 300.58894 * 13 9 7 15 15 C 1.52996 * 109.88619 * 61.60497 * 13 9 7 16 16 C 1.53006 * 109.46874 * 285.21945 * 15 13 9 17 17 C 1.53001 * 109.47249 * 185.91061 * 16 15 13 18 18 N 1.46494 * 109.47356 * 180.02562 * 17 16 15 19 19 C 1.34772 * 120.00032 * 180.02562 * 18 17 16 20 20 O 1.21284 * 120.00347 * 359.97438 * 19 18 17 21 21 C 1.50697 * 120.00082 * 179.97438 * 19 18 17 22 22 N 1.46505 * 109.47413 * 179.97438 * 21 19 18 23 23 C 1.35048 * 126.03253 * 124.71240 * 22 21 19 24 24 C 1.35381 * 107.72406 * 180.26531 * 23 22 21 25 25 Cl 1.73598 * 126.04425 * 180.02562 * 24 23 22 26 26 C 1.39933 * 107.90640 * 0.02562 * 24 23 22 27 27 N 1.30846 * 108.21528 * 0.02562 * 26 24 23 28 28 H 0.97002 * 120.00305 * 0.02562 * 1 2 3 29 29 H 1.08995 * 110.29165 * 37.03064 * 10 9 7 30 30 H 1.08995 * 110.43685 * 274.71119 * 10 9 7 31 31 H 1.09008 * 110.99926 * 279.02021 * 11 10 9 32 32 H 1.08996 * 111.03819 * 155.18576 * 11 10 9 33 33 H 1.08996 * 110.72112 * 206.13477 * 12 11 10 34 34 H 1.09002 * 110.71745 * 82.86441 * 12 11 10 35 35 H 1.08999 * 109.47420 * 165.21469 * 15 13 9 36 36 H 1.09004 * 109.47362 * 45.21134 * 15 13 9 37 37 H 1.08994 * 109.47290 * 65.90368 * 16 15 13 38 38 H 1.09005 * 109.46775 * 305.90711 * 16 15 13 39 39 H 1.09000 * 109.47008 * 59.99037 * 17 16 15 40 40 H 1.09007 * 109.46452 * 299.99686 * 17 16 15 41 41 H 0.96999 * 120.00017 * 359.97438 * 18 17 16 42 42 H 1.09000 * 109.47633 * 59.99580 * 21 19 18 43 43 H 1.09004 * 109.47628 * 299.99706 * 21 19 18 44 44 H 1.07994 * 126.14113 * 0.24739 * 23 22 21 45 45 H 1.07999 * 125.89117 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4173 2.0928 -1.3969 5 1 1.4900 2.6281 0.7788 6 1 3.5855 1.4184 0.6181 7 6 2.0103 -1.2022 0.0005 8 1 1.4795 -2.1322 0.1407 9 7 3.3681 -1.2088 -0.1766 10 6 4.1126 -0.4251 -1.1840 11 6 5.5408 -0.2841 -0.6007 12 6 5.7404 -1.6677 0.0725 13 6 4.3302 -2.0001 0.6041 14 1 4.2595 -1.7342 1.6588 15 6 4.0446 -3.4923 0.4236 16 6 2.7996 -3.8740 1.2270 17 6 2.5985 -5.3896 1.1667 18 7 1.4062 -5.7550 1.9353 19 6 1.0312 -7.0465 2.0240 20 8 1.6805 -7.9061 1.4670 21 6 -0.1950 -7.4224 2.8152 22 7 -0.3877 -8.8736 2.7573 23 6 -0.4954 -9.7036 3.8172 24 6 -0.6572 -10.9607 3.3414 25 17 -0.8438 -12.3982 4.2966 26 6 -0.6474 -10.8963 1.9436 27 7 -0.4851 -9.6462 1.5929 28 1 -0.4851 0.8400 -0.0004 29 1 3.6564 0.5565 -1.3119 30 1 4.1420 -0.9575 -2.1346 31 1 5.5845 0.5186 0.1356 32 1 6.2729 -0.1255 -1.3924 33 1 6.4551 -1.5981 0.8924 34 1 6.0617 -2.4095 -0.6587 35 1 4.8975 -4.0711 0.7783 36 1 3.8750 -3.7048 -0.6319 37 1 1.9276 -3.3747 0.8049 38 1 2.9281 -3.5656 2.2646 39 1 3.4707 -5.8889 1.5887 40 1 2.4700 -5.6979 0.1290 41 1 0.8870 -5.0675 2.3811 42 1 -1.0672 -6.9234 2.3928 43 1 -0.0669 -7.1137 3.8527 44 1 -0.4587 -9.4162 4.8575 45 1 -0.7545 -11.7340 1.2705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714527989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:01 Heat of formation + Delta-G solvation = 39.043565 kcal Electronic energy + Delta-G solvation = -26479.211783 eV Core-core repulsion = 22559.278307 eV Total energy + Delta-G solvation = -3919.933476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.33566 -40.61894 -39.63116 -37.36311 -36.65272 -34.59540 -34.47122 -33.78247 -31.70606 -31.12831 -30.16536 -28.34632 -26.40332 -25.47897 -23.03140 -22.65611 -22.19971 -21.84394 -21.28521 -20.83693 -18.91035 -18.51032 -18.24053 -17.90350 -16.97644 -16.75594 -16.35292 -16.01633 -15.74190 -15.44418 -15.19471 -15.01042 -14.73989 -14.56613 -14.23051 -14.10731 -13.96345 -13.74449 -13.43027 -13.33655 -13.08025 -12.95382 -12.68044 -12.48303 -12.41740 -12.35034 -12.14125 -11.89891 -11.54253 -11.48057 -11.40441 -11.37494 -11.13554 -11.11299 -10.62411 -10.50401 -10.14246 -9.42994 -8.52369 -8.09738 -5.64029 0.68533 0.95536 1.31740 1.40057 1.48643 1.51807 1.61359 1.75920 2.16833 2.44969 3.14829 3.41417 3.54601 3.65764 3.84930 3.89029 4.01252 4.04371 4.13965 4.14799 4.18226 4.24654 4.45641 4.50093 4.56783 4.61401 4.71324 4.79622 4.82164 4.88979 4.97262 5.02887 5.17790 5.20657 5.28181 5.33778 5.40572 5.43374 5.51192 5.66919 5.76951 6.02537 6.39046 6.47691 6.52535 6.93501 7.13909 7.59896 8.33340 9.04325 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021920 B = 0.001886 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.088063 B =14846.154181 C =15705.432944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.023 4.023 3 Si 0.947 3.053 4 H -0.291 1.291 5 H -0.315 1.315 6 H -0.250 1.250 7 C -0.230 4.230 8 H 0.073 0.927 9 N -0.621 5.621 10 C 0.105 3.895 11 C -0.130 4.130 12 C -0.116 4.116 13 C 0.148 3.852 14 H 0.035 0.965 15 C -0.109 4.109 16 C -0.126 4.126 17 C 0.134 3.866 18 N -0.714 5.714 19 C 0.494 3.506 20 O -0.569 6.569 21 C 0.115 3.885 22 N -0.361 5.361 23 C 0.084 3.916 24 C -0.203 4.203 25 Cl -0.038 7.038 26 C 0.051 3.949 27 N -0.303 5.303 28 H 0.260 0.740 29 H 0.017 0.983 30 H 0.030 0.970 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.417 0.583 42 H 0.139 0.861 43 H 0.180 0.820 44 H 0.224 0.776 45 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.659 -15.864 10.987 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.219 4.219 3 Si 0.778 3.222 4 H -0.218 1.218 5 H -0.244 1.244 6 H -0.174 1.174 7 C -0.359 4.359 8 H 0.090 0.910 9 N -0.348 5.348 10 C -0.019 4.019 11 C -0.168 4.168 12 C -0.154 4.154 13 C 0.043 3.957 14 H 0.052 0.948 15 C -0.149 4.149 16 C -0.163 4.163 17 C 0.010 3.990 18 N -0.367 5.367 19 C 0.279 3.721 20 O -0.447 6.447 21 C -0.009 4.009 22 N -0.143 5.143 23 C -0.063 4.063 24 C -0.241 4.241 25 Cl -0.010 7.010 26 C -0.136 4.136 27 N -0.124 5.124 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.254 0.746 42 H 0.157 0.843 43 H 0.197 0.803 44 H 0.240 0.760 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.033 -15.512 9.710 18.740 hybrid contribution -0.582 0.690 0.379 0.979 sum 3.451 -14.822 10.089 18.259 Atomic orbital electron populations 1.69870 1.07251 1.27069 1.55825 1.26253 0.95735 1.01230 0.98689 0.85749 0.79422 0.80256 0.76753 1.21848 1.24378 1.17417 1.18764 0.81145 0.92521 1.43487 0.90956 1.44890 1.01914 1.52290 1.35720 1.22091 0.92775 0.94026 0.93014 1.22759 0.95471 0.98063 1.00518 1.22598 0.95531 0.96349 1.00878 1.21298 0.89211 0.90810 0.94375 0.94755 1.21813 0.97031 0.96817 0.99240 1.21924 1.00533 0.92624 1.01261 1.21253 0.87113 0.95787 0.94865 1.45927 1.29651 1.07848 1.53278 1.21113 0.86736 0.82645 0.81560 1.90770 1.56126 1.50128 1.47691 1.21921 0.97494 0.75521 1.05923 1.48055 1.55283 1.07170 1.03750 1.22866 0.99183 0.88652 0.95585 1.20892 1.21993 0.89423 0.91823 1.98320 1.96827 1.35260 1.70625 1.24284 0.99246 0.95489 0.94574 1.77606 1.22964 1.03569 1.08221 0.93104 0.96485 0.95184 0.92233 0.88706 0.89086 0.90026 0.90206 0.93624 0.91401 0.91112 0.91569 0.93946 0.74609 0.84338 0.80278 0.75960 0.77920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.38 13.97 21.65 0.30 -57.08 16 2 C -0.02 -1.29 5.49 84.86 0.47 -0.83 16 3 Si 0.95 45.77 24.81 68.60 1.70 47.47 16 4 H -0.29 -13.96 6.97 99.48 0.69 -13.26 16 5 H -0.31 -15.53 7.11 99.48 0.71 -14.82 16 6 H -0.25 -11.27 6.21 99.48 0.62 -10.65 16 7 C -0.23 -12.06 9.67 84.03 0.81 -11.24 16 8 H 0.07 4.01 5.09 -2.91 -0.01 3.99 16 9 N -0.62 -27.21 2.57 -667.43 -1.72 -28.92 16 10 C 0.10 4.19 6.08 86.79 0.53 4.72 16 11 C -0.13 -3.90 7.03 31.99 0.22 -3.68 16 12 C -0.12 -3.09 6.45 31.78 0.20 -2.88 16 13 C 0.15 5.08 3.19 45.34 0.14 5.22 16 14 H 0.03 1.23 8.03 -2.39 -0.02 1.21 16 15 C -0.11 -3.31 4.67 30.60 0.14 -3.17 16 16 C -0.13 -3.80 4.97 30.60 0.15 -3.65 16 17 C 0.13 3.68 5.67 86.38 0.49 4.17 16 18 N -0.71 -16.43 5.56 -463.07 -2.57 -19.00 16 19 C 0.49 12.18 7.86 87.66 0.69 12.87 16 20 O -0.57 -20.00 15.70 -3.04 -0.05 -20.05 16 21 C 0.12 1.72 6.99 85.63 0.60 2.31 16 22 N -0.36 -7.47 3.40 -351.65 -1.20 -8.67 16 23 C 0.08 1.34 11.43 83.54 0.95 2.29 16 24 C -0.20 -3.86 6.65 22.02 0.15 -3.71 16 25 Cl -0.04 -0.63 29.30 -2.72 -0.08 -0.71 16 26 C 0.05 1.15 12.02 85.25 1.02 2.18 16 27 N -0.30 -8.36 11.64 -56.98 -0.66 -9.02 16 28 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.02 0.75 3.63 -2.39 -0.01 0.75 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.86 7.57 -2.38 -0.02 1.84 16 32 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.08 1.94 7.85 -2.39 -0.02 1.92 16 35 H 0.08 1.94 8.10 -2.39 -0.02 1.92 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 2.60 4.67 -2.39 -0.01 2.59 16 38 H 0.07 1.98 8.07 -2.38 -0.02 1.96 16 39 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.42 7.52 8.47 -92.71 -0.79 6.73 16 42 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.18 0.78 8.07 -2.38 -0.02 0.76 16 44 H 0.22 1.46 8.06 -2.91 -0.02 1.43 16 45 H 0.20 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -78.12 376.40 2.44 -75.68 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.13 Total: 15.70 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 6.58 Total: 4.61 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -5.85 Total: -122.69 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.05 Total: -20.05 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.70 Total: 47.47 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.71 kcal Total: -78.12 2.44 -75.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714527989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.726 kcal (2) G-P(sol) polarization free energy of solvation -78.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds