Wall clock time and date at job start Sat Apr 11 2020 06:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86804 * 119.99527 * 2 1 4 4 H 1.48504 * 109.46923 * 270.00401 * 3 2 1 5 5 H 1.48491 * 109.47196 * 30.00079 * 3 2 1 6 6 H 1.48503 * 109.47054 * 150.00641 * 3 2 1 7 7 C 1.38942 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99751 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00451 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00306 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99909 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00163 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47396 * 186.06116 * 12 10 9 14 14 C 1.48559 * 111.00344 * 176.49127 * 13 12 10 15 15 C 1.54374 * 104.59533 * 200.96084 * 14 13 12 16 16 C 1.54263 * 105.06286 * 23.85084 * 15 14 13 17 17 H 1.09005 * 110.32205 * 241.00580 * 16 15 14 18 18 C 1.53004 * 110.32293 * 118.89775 * 16 15 14 19 19 N 1.46501 * 109.47094 * 66.45478 * 18 16 15 20 20 C 1.34771 * 119.99881 * 179.97438 * 19 18 16 21 21 O 1.21286 * 119.99843 * 0.02562 * 20 19 18 22 22 C 1.50697 * 120.00107 * 179.97438 * 20 19 18 23 23 H 1.09004 * 110.50537 * 38.71849 * 22 20 19 24 24 C 1.54085 * 110.69110 * 275.88632 * 22 20 19 25 25 O 1.45709 * 104.00934 * 241.16192 * 24 22 20 26 26 C 1.33770 * 109.47194 * 0.34581 * 25 24 22 27 27 O 1.21517 * 123.06803 * 179.89297 * 26 25 24 28 28 N 1.34002 * 113.86118 * 359.62058 * 26 25 24 29 29 C 1.48563 * 110.99934 * 61.07194 * 13 12 10 30 30 H 0.96997 * 119.99889 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99507 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47213 * 66.05913 * 12 10 9 33 33 H 1.09002 * 109.46951 * 306.05643 * 12 10 9 34 34 H 1.09000 * 110.41171 * 82.17994 * 14 13 12 35 35 H 1.09007 * 110.40781 * 319.73816 * 14 13 12 36 36 H 1.09004 * 110.32368 * 264.95675 * 15 14 13 37 37 H 1.09002 * 110.32763 * 142.74817 * 15 14 13 38 38 H 1.08996 * 109.47159 * 306.45182 * 18 16 15 39 39 H 1.09002 * 109.46500 * 186.45668 * 18 16 15 40 40 H 0.97000 * 119.99739 * 359.97438 * 19 18 16 41 41 H 1.09004 * 110.52687 * 359.97438 * 24 22 20 42 42 H 1.09001 * 110.52451 * 122.73376 * 24 22 20 43 43 H 0.96992 * 125.55848 * 180.24998 * 28 26 25 44 44 H 1.08995 * 110.41321 * 40.25944 * 29 13 12 45 45 H 1.09010 * 110.41085 * 277.81628 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4954 2.0466 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0005 11 8 3.2104 -3.5577 -0.0001 12 6 1.2441 -4.8629 0.0000 13 7 2.1920 -5.9755 0.1462 14 6 1.4780 -7.2752 0.2354 15 6 2.4890 -8.2292 0.9068 16 6 3.4469 -7.3099 1.6924 17 1 4.4666 -7.4221 1.3238 18 6 3.3847 -7.6308 3.1872 19 7 3.9215 -8.9737 3.4211 20 6 3.9673 -9.4725 4.6723 21 8 3.5638 -8.8097 5.6045 22 6 4.5189 -10.8540 4.9129 23 1 5.3798 -11.0388 4.2703 24 6 3.4323 -11.9219 4.6824 25 8 3.3039 -12.5795 5.9763 26 6 4.1481 -12.0170 6.8482 27 8 4.2428 -12.3758 8.0053 28 7 4.8840 -11.0255 6.3275 29 6 2.9339 -5.8778 1.4296 30 1 -0.4850 0.8400 0.0004 31 1 0.3535 -2.3906 0.0002 32 1 0.7009 -4.9693 -0.9389 33 1 0.5389 -4.8750 0.8311 34 1 1.2186 -7.6356 -0.7600 35 1 0.5832 -7.1759 0.8499 36 1 3.0383 -8.7913 0.1515 37 1 1.9746 -8.9090 1.5861 38 1 2.3492 -7.5894 3.5248 39 1 3.9766 -6.9014 3.7401 40 1 4.2438 -9.5038 2.6755 41 1 2.4913 -11.4535 4.3937 42 1 3.7533 -12.6363 3.9243 43 1 5.5491 -10.5058 6.8055 44 1 2.2670 -5.5598 2.2309 45 1 3.7708 -5.1860 1.3332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714633156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:15 Heat of formation + Delta-G solvation = -128.047639 kcal Electronic energy + Delta-G solvation = -28966.775097 eV Core-core repulsion = 24598.886838 eV Total energy + Delta-G solvation = -4367.888259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.31376 -40.13883 -39.24203 -37.76007 -37.55602 -35.49901 -35.13496 -33.96172 -32.36573 -31.25081 -30.53199 -29.35035 -27.22645 -25.90616 -24.57081 -23.95454 -22.91421 -21.64089 -20.89231 -20.37050 -19.20501 -18.75045 -18.48129 -17.90585 -17.57840 -16.73881 -16.57779 -16.06554 -15.72102 -15.48454 -15.23749 -15.06646 -14.80644 -14.64451 -14.54143 -14.15232 -14.03650 -13.81535 -13.63160 -13.42159 -12.92748 -12.64251 -12.47735 -12.08622 -11.91905 -11.55411 -11.46393 -11.33862 -11.21200 -11.16373 -11.13117 -10.91417 -10.82061 -10.66731 -10.42607 -10.25935 -9.82592 -9.59431 -9.52819 -8.53407 -8.12546 -7.99079 -6.45838 -3.86870 1.82105 1.98618 2.22610 2.51763 3.01516 3.14785 3.23938 3.29259 3.40711 3.84654 3.85085 3.96075 3.97468 4.18057 4.37775 4.46265 4.53338 4.59590 4.63861 4.76322 5.03470 5.07680 5.16204 5.21194 5.32741 5.50613 5.55780 5.62348 5.66213 5.74319 5.84936 5.85448 5.96119 6.12758 6.20408 6.21510 6.39611 6.65889 6.86562 7.03341 7.13566 7.51197 7.53006 7.60445 8.01473 8.56661 9.13598 9.49441 10.00651 10.71773 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022171 B = 0.001792 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.596777 B =15625.186012 C =16321.168388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.442 3.558 11 O -0.580 6.580 12 C 0.034 3.966 13 N -0.485 5.485 14 C 0.027 3.973 15 C -0.120 4.120 16 C -0.106 4.106 17 H 0.088 0.912 18 C 0.125 3.875 19 N -0.718 5.718 20 C 0.498 3.502 21 O -0.515 6.515 22 C 0.076 3.924 23 H 0.128 0.872 24 C 0.055 3.945 25 O -0.322 6.322 26 C 0.652 3.348 27 O -0.515 6.515 28 N -0.711 5.711 29 C 0.045 3.955 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.404 0.596 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.441 0.559 44 H 0.041 0.959 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.493 -23.765 2.952 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.227 3.773 11 O -0.464 6.464 12 C -0.097 4.097 13 N -0.209 5.209 14 C -0.101 4.101 15 C -0.158 4.158 16 C -0.125 4.125 17 H 0.107 0.893 18 C 0.002 3.998 19 N -0.371 5.371 20 C 0.281 3.719 21 O -0.390 6.390 22 C -0.034 4.034 23 H 0.146 0.854 24 C -0.020 4.020 25 O -0.232 6.232 26 C 0.404 3.596 27 O -0.399 6.399 28 N -0.383 5.383 29 C -0.083 4.083 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.238 0.762 41 H 0.129 0.871 42 H 0.140 0.860 43 H 0.285 0.715 44 H 0.059 0.941 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.971 -23.542 3.745 24.574 hybrid contribution -0.428 1.155 0.229 1.253 sum 5.544 -22.387 3.974 23.403 Atomic orbital electron populations 1.69612 1.05947 1.28218 1.50434 1.25273 0.95643 0.99767 0.97258 0.85853 0.79220 0.80779 0.78412 1.20372 1.20925 1.19418 1.19690 0.93356 0.82174 1.47688 0.87887 1.41870 1.09210 1.04614 1.64205 1.19688 0.88388 0.84536 0.84697 1.90488 1.13632 1.86938 1.55376 1.22078 0.94164 0.91540 1.01953 1.65191 1.22277 1.00271 1.33127 1.23173 0.95618 0.90733 1.00575 1.22399 0.97009 0.97386 0.99012 1.22207 1.00999 0.96613 0.92710 0.89346 1.21579 0.99695 0.82370 0.96174 1.45997 1.64265 1.18626 1.08196 1.20543 0.79826 0.87989 0.83575 1.90821 1.45997 1.59934 1.42211 1.22319 1.00334 0.94450 0.86323 0.85423 1.24258 0.99602 0.93551 0.84635 1.87319 1.57857 1.56189 1.21813 1.18413 0.77504 0.78824 0.84872 1.91112 1.69179 1.66681 1.12942 1.45671 1.43627 1.38257 1.10789 1.23152 1.00022 0.95064 0.90100 0.91831 0.77481 0.89059 0.93365 0.90127 0.94031 0.90794 0.91356 0.91007 0.90665 0.76179 0.87117 0.86004 0.71469 0.94099 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.16 13.05 55.50 0.72 -23.44 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.75 29.55 -169.99 -5.02 15.72 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.30 -8.17 9.68 -14.94 -0.14 -8.32 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 9 N -0.56 -13.89 5.29 -10.97 -0.06 -13.95 16 10 C 0.44 10.01 7.43 -10.99 -0.08 9.93 16 11 O -0.58 -14.94 14.00 5.55 0.08 -14.86 16 12 C 0.03 0.58 5.39 -4.98 -0.03 0.55 16 13 N -0.48 -7.28 5.18 -231.41 -1.20 -8.48 16 14 C 0.03 0.29 6.49 -2.19 -0.01 0.28 16 15 C -0.12 -0.91 6.33 -25.35 -0.16 -1.07 16 16 C -0.11 -0.96 3.13 -89.24 -0.28 -1.24 16 17 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 18 C 0.13 1.05 4.76 -4.04 -0.02 1.03 16 19 N -0.72 -3.79 5.32 -60.29 -0.32 -4.11 16 20 C 0.50 3.53 6.94 -10.99 -0.08 3.45 16 21 O -0.52 -6.40 16.60 5.55 0.09 -6.31 16 22 C 0.08 0.30 4.17 -68.19 -0.28 0.01 16 23 H 0.13 0.00 8.14 -51.93 -0.42 -0.43 16 24 C 0.06 0.18 7.87 37.72 0.30 0.48 16 25 O -0.32 -2.79 11.09 -37.83 -0.42 -3.21 16 26 C 0.65 6.85 9.16 53.71 0.49 7.34 16 27 O -0.52 -7.61 18.04 -19.12 -0.35 -7.95 16 28 N -0.71 -4.97 5.66 -59.36 -0.34 -5.31 16 29 C 0.04 0.64 5.12 -2.18 -0.01 0.63 16 30 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.39 9.29 7.90 -40.82 -0.32 8.96 16 32 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.05 0.75 7.98 -51.93 -0.41 0.33 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.04 0.43 7.92 -51.93 -0.41 0.02 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.41 7.63 -51.93 -0.40 0.01 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.40 0.79 8.32 -40.82 -0.34 0.45 16 41 H 0.11 0.31 7.73 -51.93 -0.40 -0.09 16 42 H 0.12 -0.05 8.14 -51.93 -0.42 -0.48 16 43 H 0.44 2.66 8.96 -40.82 -0.37 2.30 16 44 H 0.04 0.59 7.67 -51.93 -0.40 0.20 16 45 H 0.11 1.90 6.53 -51.92 -0.34 1.57 16 LS Contribution 378.32 15.07 5.70 5.70 Total: -1.00 -37.63 378.32 -7.79 -45.43 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.28 Total: 7.19 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: -0.40 Total: 13.57 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -1.19 Total: -55.28 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.59 Total: -32.33 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.63 -7.79 -45.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714633156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.621 kcal (2) G-P(sol) polarization free energy of solvation -37.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds