Wall clock time and date at job start Sat Apr 11 2020 06:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86804 * 119.99527 * 2 1 4 4 H 1.48504 * 109.46923 * 270.00401 * 3 2 1 5 5 H 1.48491 * 109.47196 * 30.00079 * 3 2 1 6 6 H 1.48503 * 109.47054 * 150.00641 * 3 2 1 7 7 C 1.38942 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99751 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00451 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00306 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99909 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00163 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47396 * 186.06116 * 12 10 9 14 14 C 1.48559 * 111.00344 * 176.49127 * 13 12 10 15 15 C 1.54374 * 104.59533 * 200.96084 * 14 13 12 16 16 C 1.54263 * 105.06286 * 23.85084 * 15 14 13 17 17 H 1.09005 * 110.32205 * 241.00580 * 16 15 14 18 18 C 1.53004 * 110.32293 * 118.89775 * 16 15 14 19 19 N 1.46501 * 109.47094 * 66.45478 * 18 16 15 20 20 C 1.34771 * 119.99881 * 179.97438 * 19 18 16 21 21 O 1.21286 * 119.99843 * 0.02562 * 20 19 18 22 22 C 1.50697 * 120.00107 * 179.97438 * 20 19 18 23 23 H 1.09004 * 110.50537 * 38.71849 * 22 20 19 24 24 C 1.54085 * 110.69110 * 275.88632 * 22 20 19 25 25 O 1.45709 * 104.00934 * 241.16192 * 24 22 20 26 26 C 1.33770 * 109.47194 * 0.34581 * 25 24 22 27 27 O 1.21517 * 123.06803 * 179.89297 * 26 25 24 28 28 N 1.34002 * 113.86118 * 359.62058 * 26 25 24 29 29 C 1.48563 * 110.99934 * 61.07194 * 13 12 10 30 30 H 0.96997 * 119.99889 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99507 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47213 * 66.05913 * 12 10 9 33 33 H 1.09002 * 109.46951 * 306.05643 * 12 10 9 34 34 H 1.09000 * 110.41171 * 82.17994 * 14 13 12 35 35 H 1.09007 * 110.40781 * 319.73816 * 14 13 12 36 36 H 1.09004 * 110.32368 * 264.95675 * 15 14 13 37 37 H 1.09002 * 110.32763 * 142.74817 * 15 14 13 38 38 H 1.08996 * 109.47159 * 306.45182 * 18 16 15 39 39 H 1.09002 * 109.46500 * 186.45668 * 18 16 15 40 40 H 0.97000 * 119.99739 * 359.97438 * 19 18 16 41 41 H 1.09004 * 110.52687 * 359.97438 * 24 22 20 42 42 H 1.09001 * 110.52451 * 122.73376 * 24 22 20 43 43 H 0.96992 * 125.55848 * 180.24998 * 28 26 25 44 44 H 1.08995 * 110.41321 * 40.25944 * 29 13 12 45 45 H 1.09010 * 110.41085 * 277.81628 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4954 2.0466 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0005 11 8 3.2104 -3.5577 -0.0001 12 6 1.2441 -4.8629 0.0000 13 7 2.1920 -5.9755 0.1462 14 6 1.4780 -7.2752 0.2354 15 6 2.4890 -8.2292 0.9068 16 6 3.4469 -7.3099 1.6924 17 1 4.4666 -7.4221 1.3238 18 6 3.3847 -7.6308 3.1872 19 7 3.9215 -8.9737 3.4211 20 6 3.9673 -9.4725 4.6723 21 8 3.5638 -8.8097 5.6045 22 6 4.5189 -10.8540 4.9129 23 1 5.3798 -11.0388 4.2703 24 6 3.4323 -11.9219 4.6824 25 8 3.3039 -12.5795 5.9763 26 6 4.1481 -12.0170 6.8482 27 8 4.2428 -12.3758 8.0053 28 7 4.8840 -11.0255 6.3275 29 6 2.9339 -5.8778 1.4296 30 1 -0.4850 0.8400 0.0004 31 1 0.3535 -2.3906 0.0002 32 1 0.7009 -4.9693 -0.9389 33 1 0.5389 -4.8750 0.8311 34 1 1.2186 -7.6356 -0.7600 35 1 0.5832 -7.1759 0.8499 36 1 3.0383 -8.7913 0.1515 37 1 1.9746 -8.9090 1.5861 38 1 2.3492 -7.5894 3.5248 39 1 3.9766 -6.9014 3.7401 40 1 4.2438 -9.5038 2.6755 41 1 2.4913 -11.4535 4.3937 42 1 3.7533 -12.6363 3.9243 43 1 5.5491 -10.5058 6.8055 44 1 2.2670 -5.5598 2.2309 45 1 3.7708 -5.1860 1.3332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714633156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:15 Heat of formation + Delta-G solvation = -163.105284 kcal Electronic energy + Delta-G solvation = -28968.295310 eV Core-core repulsion = 24598.886838 eV Total energy + Delta-G solvation = -4369.408472 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.88313 -40.95703 -40.41106 -39.20852 -38.36614 -36.34158 -35.86530 -35.73252 -33.47769 -33.07532 -31.15041 -30.12978 -28.53410 -26.92837 -25.84048 -24.81700 -23.55688 -22.55846 -21.65948 -21.17994 -20.91544 -19.87171 -19.32941 -19.00012 -18.18056 -17.83309 -17.32208 -17.18359 -16.75941 -16.60187 -16.28176 -16.17549 -15.97942 -15.55584 -15.47214 -15.28397 -15.03190 -14.76333 -14.51766 -14.46369 -13.89974 -13.79354 -13.54213 -13.31741 -13.06599 -12.99474 -12.91332 -12.43764 -12.41433 -12.16764 -12.08277 -12.05990 -11.91616 -11.84944 -11.54390 -11.46729 -11.40967 -10.39458 -10.28254 -10.22164 -10.01849 -9.36747 -8.47874 -5.96452 1.26307 1.36712 1.39020 1.40592 1.53055 1.61596 1.95798 2.03951 2.27530 2.58487 2.87516 3.09607 3.19109 3.32566 3.39059 3.70314 3.77808 3.80717 3.90325 4.07584 4.29523 4.33133 4.35591 4.39397 4.45258 4.49008 4.50384 4.60331 4.72024 4.78070 4.84289 5.00296 5.16245 5.23881 5.28894 5.38772 5.40213 5.62965 5.85086 5.96187 6.07073 6.10296 6.42358 6.59170 6.88163 7.10474 7.11771 7.55171 8.10595 8.69538 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022171 B = 0.001792 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.596777 B =15625.186012 C =16321.168388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.992 3.008 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.331 4.331 8 H 0.079 0.921 9 N -0.575 5.575 10 C 0.439 3.561 11 O -0.614 6.614 12 C 0.046 3.954 13 N -0.505 5.505 14 C 0.023 3.977 15 C -0.108 4.108 16 C -0.089 4.089 17 H 0.099 0.901 18 C 0.134 3.866 19 N -0.696 5.696 20 C 0.499 3.501 21 O -0.576 6.576 22 C 0.084 3.916 23 H 0.184 0.816 24 C 0.050 3.950 25 O -0.340 6.340 26 C 0.648 3.352 27 O -0.573 6.573 28 N -0.704 5.704 29 C 0.041 3.959 30 H 0.277 0.723 31 H 0.395 0.605 32 H 0.111 0.889 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.046 0.954 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.426 0.574 41 H 0.117 0.883 42 H 0.173 0.827 43 H 0.444 0.556 44 H 0.028 0.972 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.660 -25.948 1.170 26.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.461 4.461 8 H 0.097 0.903 9 N -0.213 5.213 10 C 0.227 3.773 11 O -0.500 6.500 12 C -0.085 4.085 13 N -0.229 5.229 14 C -0.104 4.104 15 C -0.146 4.146 16 C -0.108 4.108 17 H 0.117 0.883 18 C 0.010 3.990 19 N -0.350 5.350 20 C 0.284 3.716 21 O -0.454 6.454 22 C -0.025 4.025 23 H 0.201 0.799 24 C -0.024 4.024 25 O -0.249 6.249 26 C 0.401 3.599 27 O -0.462 6.462 28 N -0.376 5.376 29 C -0.088 4.088 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.129 0.871 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.065 0.935 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.264 0.736 41 H 0.135 0.865 42 H 0.190 0.810 43 H 0.288 0.712 44 H 0.046 0.954 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.134 -25.756 1.872 26.542 hybrid contribution -0.487 1.839 0.687 2.022 sum 5.647 -23.917 2.559 24.708 Atomic orbital electron populations 1.69674 1.06825 1.29257 1.50436 1.26042 0.96551 1.02435 0.96371 0.84934 0.77862 0.76915 0.78673 1.19554 1.19682 1.19784 1.19647 0.92682 0.83971 1.49795 0.90252 1.41955 1.09294 1.04779 1.65223 1.20769 0.88345 0.85942 0.82272 1.90467 1.15547 1.87815 1.56189 1.21945 0.93973 0.89072 1.03558 1.65158 1.22815 1.01405 1.33540 1.23349 0.96326 0.88777 1.01988 1.22420 0.95981 0.96633 0.99530 1.22018 1.01868 0.93637 0.93288 0.88319 1.21258 0.98845 0.83582 0.95346 1.45714 1.63225 1.17380 1.08632 1.21131 0.78653 0.88842 0.83010 1.90816 1.48667 1.61855 1.44108 1.22669 1.02387 0.92215 0.85195 0.79943 1.24817 0.99995 0.94277 0.83285 1.87278 1.57320 1.56670 1.23662 1.18588 0.77671 0.79168 0.84507 1.91052 1.71005 1.68582 1.15519 1.45710 1.42583 1.37007 1.12281 1.23025 0.98406 0.97642 0.89680 0.91341 0.77109 0.87132 0.91844 0.88746 0.93530 0.88358 0.88752 0.92107 0.92978 0.73554 0.86501 0.80955 0.71200 0.95354 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.60 13.05 21.66 0.28 -49.32 16 2 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 3 Si 0.99 42.81 29.55 68.60 2.03 44.83 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.33 -18.69 9.68 84.04 0.81 -17.88 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.58 -29.28 5.29 -307.00 -1.62 -30.90 16 10 C 0.44 20.50 7.43 87.66 0.65 21.15 16 11 O -0.61 -32.98 14.00 -3.07 -0.04 -33.02 16 12 C 0.05 1.54 5.39 85.56 0.46 2.00 16 13 N -0.50 -14.61 5.18 -886.04 -4.59 -19.21 16 14 C 0.02 0.41 6.49 86.45 0.56 0.97 16 15 C -0.11 -1.17 6.33 31.49 0.20 -0.97 16 16 C -0.09 -1.42 3.13 -9.90 -0.03 -1.46 16 17 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 18 C 0.13 2.07 4.76 86.38 0.41 2.48 16 19 N -0.70 -5.00 5.32 -463.06 -2.46 -7.47 16 20 C 0.50 5.85 6.94 87.66 0.61 6.46 16 21 O -0.58 -14.11 16.60 -3.05 -0.05 -14.16 16 22 C 0.08 0.35 4.17 44.50 0.19 0.53 16 23 H 0.18 -1.15 8.14 -2.38 -0.02 -1.17 16 24 C 0.05 0.13 7.87 72.35 0.57 0.70 16 25 O -0.34 -5.31 11.09 -47.30 -0.52 -5.83 16 26 C 0.65 13.38 9.16 129.91 1.19 14.57 16 27 O -0.57 -17.64 18.04 19.63 0.35 -17.28 16 28 N -0.70 -8.85 5.66 -573.42 -3.24 -12.09 16 29 C 0.04 1.18 5.12 86.45 0.44 1.62 16 30 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 31 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 32 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 33 H 0.06 1.92 7.98 -2.39 -0.02 1.90 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.05 0.81 7.92 -2.38 -0.02 0.79 16 36 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.09 0.60 7.63 -2.39 -0.02 0.59 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.43 -0.59 8.32 -92.71 -0.77 -1.37 16 41 H 0.12 0.19 7.73 -2.39 -0.02 0.17 16 42 H 0.17 -1.25 8.14 -2.39 -0.02 -1.27 16 43 H 0.44 5.05 8.96 -92.71 -0.83 4.22 16 44 H 0.03 0.86 7.67 -2.39 -0.02 0.84 16 45 H 0.06 2.39 6.53 -2.38 -0.02 2.37 16 Total: -1.00 -89.70 378.32 -4.62 -94.32 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -1.27 Total: 20.27 kcal Atomic # 6 Polarization: 23.34 SS G_CDS: 6.53 Total: 29.87 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -11.64 Total: -118.99 kcal Atomic # 8 Polarization: -70.03 SS G_CDS: -0.26 Total: -70.30 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -89.70 -4.62 -94.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714633156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.788 kcal (2) G-P(sol) polarization free energy of solvation -89.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds