Wall clock time and date at job start Sat Apr 11 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00026 * 2 1 4 4 C 1.53006 * 109.47129 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46992 * 64.99971 * 4 3 2 6 6 C 1.46490 * 120.00322 * 269.99874 * 5 4 3 7 7 C 1.50700 * 109.47314 * 270.00006 * 6 5 4 8 8 H 1.07993 * 120.00043 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99981 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00113 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 120.00271 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47170 * 89.99576 * 11 9 7 13 13 H 1.48496 * 109.47246 * 209.99797 * 11 9 7 14 14 H 1.48501 * 109.46879 * 329.99281 * 11 9 7 15 15 C 1.34780 * 119.99566 * 90.00440 * 5 4 3 16 16 O 1.21280 * 120.00423 * 359.97438 * 15 5 4 17 17 C 1.50701 * 119.99795 * 180.02562 * 15 5 4 18 18 C 1.52997 * 109.47212 * 179.97438 * 17 15 5 19 19 N 1.46500 * 109.47473 * 179.97438 * 18 17 15 20 20 C 1.36882 * 126.39851 * 264.69011 * 19 18 17 21 21 C 1.34670 * 106.81632 * 179.83779 * 20 19 18 22 22 N 1.48025 * 125.99061 * 180.15523 * 21 20 19 23 23 O 1.21798 * 120.00138 * 180.34250 * 22 21 20 24 24 O 1.21803 * 119.99528 * 0.33866 * 22 21 20 25 25 N 1.34129 * 108.01944 * 0.42377 * 21 20 19 26 26 C 1.30495 * 109.25649 * 359.73199 * 25 21 20 27 27 C 1.50703 * 125.64920 * 180.02562 * 26 25 21 28 28 H 1.08996 * 109.47494 * 59.99430 * 1 2 3 29 29 H 1.09007 * 109.46914 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46863 * 299.99090 * 1 2 3 31 31 H 1.09003 * 109.47073 * 60.00808 * 3 2 1 32 32 H 1.08990 * 109.47543 * 300.00322 * 3 2 1 33 33 H 1.09000 * 109.46856 * 305.00341 * 4 3 2 34 34 H 1.09000 * 109.46976 * 185.00666 * 4 3 2 35 35 H 1.09006 * 109.47028 * 30.00444 * 6 5 4 36 36 H 1.09002 * 109.47109 * 150.00022 * 6 5 4 37 37 H 0.96998 * 120.00299 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.47060 * 299.99722 * 17 15 5 39 39 H 1.09001 * 109.47380 * 59.99809 * 17 15 5 40 40 H 1.09002 * 109.47153 * 299.99998 * 18 17 15 41 41 H 1.08998 * 109.47533 * 59.99628 * 18 17 15 42 42 H 1.07995 * 126.58819 * 0.02562 * 20 19 18 43 43 H 1.09004 * 109.46802 * 269.99872 * 27 26 25 44 44 H 1.09003 * 109.47439 * 29.99303 * 27 26 25 45 45 H 1.09003 * 109.47510 * 149.99975 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.1052 -0.8920 -1.3428 7 6 5.5010 -1.2978 -0.9451 8 1 6.2195 -0.5461 -0.6539 9 6 5.8603 -2.6289 -0.9519 10 7 7.0782 -2.9831 -0.6043 11 14 4.6172 -3.9294 -1.4550 12 1 4.7024 -4.1551 -2.9202 13 1 4.9112 -5.1977 -0.7408 14 1 3.2497 -3.4691 -1.1036 15 6 4.2615 1.3338 -2.3217 16 8 4.1539 2.5395 -2.2473 17 6 4.7138 0.6958 -3.6100 18 6 4.9696 1.7832 -4.6554 19 7 5.4098 1.1631 -5.9075 20 6 6.7046 0.9840 -6.3140 21 6 6.6555 0.3762 -7.5147 22 7 7.8205 -0.0196 -8.3376 23 8 7.6493 -0.5604 -9.4154 24 8 8.9504 0.1955 -7.9367 25 7 5.3658 0.1976 -7.8369 26 6 4.6139 0.6666 -6.8790 27 6 3.1071 0.6553 -6.8596 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.6887 1.8463 0.8901 32 1 1.6886 1.8464 -0.8898 33 1 3.8514 0.5681 0.8409 34 1 3.9785 2.1764 0.0890 35 1 3.3852 -1.3629 -0.6735 36 1 3.9119 -1.2113 -2.3669 37 1 7.3311 -3.9195 -0.6095 38 1 5.6326 0.1360 -3.4352 39 1 3.9394 0.0193 -3.9719 40 1 4.0505 2.3427 -4.8301 41 1 5.7437 2.4600 -4.2938 42 1 7.5944 1.2718 -5.7739 43 1 2.7310 1.5716 -7.3149 44 1 2.7428 -0.2052 -7.4210 45 1 2.7573 0.5915 -5.8292 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103215413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:47 Heat of formation + Delta-G solvation = -18.696500 kcal Electronic energy + Delta-G solvation = -30159.001968 eV Core-core repulsion = 25795.855530 eV Total energy + Delta-G solvation = -4363.146438 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.09610 -41.64603 -39.71002 -37.74066 -36.42507 -35.53080 -35.13206 -32.74538 -32.48254 -31.40090 -29.87526 -28.54547 -27.81541 -26.49201 -25.93464 -24.50049 -22.71177 -22.37863 -21.80976 -20.55396 -19.00949 -18.72618 -18.36283 -17.56724 -17.27678 -17.22098 -16.45232 -16.32184 -15.94565 -15.69679 -15.50513 -15.17318 -14.78708 -14.58280 -14.23244 -14.04932 -13.47878 -13.35387 -13.07935 -12.80463 -12.74117 -12.51024 -12.34142 -12.10522 -11.88995 -11.75676 -11.51206 -11.44404 -11.32545 -11.15472 -11.03713 -11.00232 -10.74963 -10.66690 -10.37308 -10.36045 -9.77387 -9.70587 -9.46828 -9.22103 -8.82990 -8.03780 -6.32826 -4.36159 0.26990 1.17078 1.48320 2.19081 2.46748 2.90169 3.09984 3.19866 3.21047 3.49054 3.87694 3.89960 4.12049 4.17686 4.39952 4.58520 4.62316 4.87629 4.97650 4.99806 5.12775 5.13052 5.15038 5.24516 5.28906 5.37382 5.38975 5.40240 5.44605 5.53097 5.60765 5.71192 5.79025 5.88176 6.11735 6.30027 6.37785 6.49750 6.62497 7.05247 7.11723 7.20167 7.32848 7.85837 7.85976 8.22714 8.49033 8.70981 9.25965 10.79333 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009804 B = 0.003570 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.316115 B = 7840.758365 C = 9269.997391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.048 3.952 4 C 0.121 3.879 5 N -0.575 5.575 6 C 0.209 3.791 7 C -0.549 4.549 8 H 0.077 0.923 9 C 0.079 3.921 10 N -0.887 5.887 11 Si 0.867 3.133 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.260 1.260 15 C 0.525 3.475 16 O -0.576 6.576 17 C -0.159 4.159 18 C 0.115 3.885 19 N -0.438 5.438 20 C 0.071 3.929 21 C 0.038 3.962 22 N 0.069 4.931 23 O -0.140 6.140 24 O -0.163 6.163 25 N -0.450 5.450 26 C 0.246 3.754 27 C -0.074 4.074 28 H 0.036 0.964 29 H 0.083 0.917 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.024 0.976 37 H 0.268 0.732 38 H 0.119 0.881 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.207 0.793 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.418 9.528 -4.688 15.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.030 4.030 4 C -0.003 4.003 5 N -0.303 5.303 6 C 0.088 3.912 7 C -0.587 4.587 8 H 0.095 0.905 9 C -0.125 4.125 10 N -0.524 5.524 11 Si 0.693 3.307 12 H -0.200 1.200 13 H -0.207 1.207 14 H -0.184 1.184 15 C 0.312 3.688 16 O -0.458 6.458 17 C -0.199 4.199 18 C -0.006 4.006 19 N -0.119 5.119 20 C -0.072 4.072 21 C -0.171 4.171 22 N 0.590 4.410 23 O -0.360 6.360 24 O -0.373 6.373 25 N -0.170 5.170 26 C -0.019 4.019 27 C -0.133 4.133 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.078 0.922 38 H 0.137 0.863 39 H 0.116 0.884 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.224 0.776 43 H 0.109 0.891 44 H 0.118 0.882 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.082 9.671 -4.780 16.197 hybrid contribution -0.017 -0.605 0.369 0.709 sum -12.099 9.066 -4.411 15.749 Atomic orbital electron populations 1.22697 0.81898 1.02458 0.99428 1.88018 1.18910 1.27669 1.95272 1.23033 0.95040 0.84860 1.00082 1.21420 0.91092 0.99993 0.87773 1.47825 1.63027 1.09161 1.10321 1.19907 0.98566 0.75121 0.97557 1.21341 0.95868 0.93788 1.47688 0.90454 1.24852 0.95059 0.98322 0.94271 1.69874 1.18092 1.17748 1.46698 0.86981 0.82572 0.81916 0.79242 1.20002 1.20718 1.18384 1.19933 0.77137 0.86503 0.85214 1.90635 1.56164 1.14292 1.84744 1.22001 1.06102 0.98686 0.93083 1.21989 1.03864 0.95308 0.79401 1.45858 1.05228 1.43331 1.17480 1.22440 0.89424 1.00320 0.95034 1.20536 0.87831 1.14396 0.94339 1.42230 1.00529 0.98114 1.00141 1.94561 1.92384 1.41225 1.07849 1.94566 1.06954 1.59648 1.76169 1.69686 0.98990 1.21134 1.27224 1.23464 0.96242 0.97986 0.84215 1.20400 0.82984 1.05277 1.04596 0.94544 0.89888 0.94429 0.92811 0.93284 0.88993 0.88952 0.93195 0.95812 0.92195 0.86253 0.88382 0.87152 0.86918 0.77594 0.89072 0.88155 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.61 9.53 -35.23 -0.34 -5.94 16 3 C 0.05 0.63 6.28 37.16 0.23 0.86 16 4 C 0.12 1.87 5.81 -4.04 -0.02 1.85 16 5 N -0.57 -10.10 2.42 -175.06 -0.42 -10.52 16 6 C 0.21 4.24 3.85 -5.20 -0.02 4.22 16 7 C -0.55 -13.52 9.84 -34.44 -0.34 -13.86 16 8 H 0.08 2.13 8.06 -52.49 -0.42 1.70 16 9 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 10 N -0.89 -25.07 13.96 55.43 0.77 -24.30 16 11 Si 0.87 19.36 27.47 -169.99 -4.67 14.69 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.26 -5.50 6.54 56.52 0.37 -5.13 16 15 C 0.52 8.45 7.67 -10.98 -0.08 8.37 16 16 O -0.58 -9.79 15.56 5.56 0.09 -9.71 16 17 C -0.16 -2.13 4.58 -27.88 -0.13 -2.26 16 18 C 0.12 1.20 4.97 -4.04 -0.02 1.18 16 19 N -0.44 -5.02 2.75 -113.91 -0.31 -5.33 16 20 C 0.07 0.89 11.25 -16.56 -0.19 0.71 16 21 C 0.04 0.60 8.02 -145.54 -1.17 -0.57 16 22 N 0.07 1.16 4.45 32.62 0.15 1.31 16 23 O -0.14 -2.50 19.24 -29.46 -0.57 -3.07 16 24 O -0.16 -2.68 19.02 -29.46 -0.56 -3.24 16 25 N -0.45 -6.87 11.23 -7.88 -0.09 -6.96 16 26 C 0.25 2.95 7.90 -155.42 -1.23 1.72 16 27 C -0.07 -0.58 10.04 36.01 0.36 -0.22 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.50 8.07 -51.93 -0.42 1.08 16 34 H 0.09 1.36 7.42 -51.93 -0.39 0.98 16 35 H 0.05 1.06 6.17 -51.93 -0.32 0.74 16 36 H 0.02 0.46 5.87 -51.93 -0.30 0.16 16 37 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.12 1.88 8.00 -51.93 -0.42 1.46 16 39 H 0.10 1.22 6.93 -51.93 -0.36 0.86 16 40 H 0.11 0.98 7.88 -51.93 -0.41 0.57 16 41 H 0.11 1.13 8.09 -51.93 -0.42 0.71 16 42 H 0.21 2.04 8.06 -52.49 -0.42 1.62 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 0.58 7.36 -51.93 -0.38 0.20 16 LS Contribution 390.27 15.07 5.88 5.88 Total: -1.00 -32.58 390.27 -8.04 -40.62 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.39 Total: 1.15 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -1.59 Total: 5.42 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.09 Total: -45.80 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -1.38 Total: -21.96 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.67 Total: 14.69 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.58 -8.04 -40.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103215413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.925 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds