Wall clock time and date at job start Sat Apr 11 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35458 * 126.43913 * 2 1 4 4 Cl 1.73605 * 127.23496 * 359.96314 * 3 2 1 5 5 C 1.41543 * 105.52552 * 180.02562 * 3 2 1 6 6 C 1.47665 * 126.46271 * 179.97438 * 5 3 2 7 7 O 1.21579 * 120.00173 * 4.79998 * 6 5 3 8 8 N 1.34778 * 120.00184 * 184.80149 * 6 5 3 9 9 C 1.46501 * 119.99700 * 5.06774 * 8 6 5 10 10 C 1.46495 * 120.00238 * 184.79061 * 8 6 5 11 11 C 1.53041 * 109.46214 * 240.30378 * 10 8 6 12 12 C 1.53195 * 109.31674 * 178.59933 * 11 10 8 13 13 N 1.46924 * 108.76337 * 54.65282 * 12 11 10 14 14 C 1.36941 * 120.62853 * 126.40774 * 13 12 11 15 15 H 1.07994 * 120.00068 * 331.55632 * 14 13 12 16 16 C 1.38811 * 119.99620 * 151.55849 * 14 13 12 17 17 N 1.31612 * 120.00381 * 342.49620 * 16 14 13 18 18 Si 1.86797 * 119.99759 * 162.50485 * 16 14 13 19 19 H 1.48504 * 109.47277 * 89.99398 * 18 16 14 20 20 H 1.48499 * 109.47163 * 209.99304 * 18 16 14 21 21 H 1.48504 * 109.47313 * 329.99582 * 18 16 14 22 22 C 1.46928 * 118.74011 * 306.38479 * 13 12 11 23 23 C 1.53040 * 109.46321 * 120.24843 * 10 8 6 24 24 N 1.31828 * 107.07669 * 0.22459 * 5 3 2 25 25 N 1.28464 * 110.13578 * 359.62056 * 24 5 3 26 26 C 1.46500 * 124.93917 * 180.19386 * 25 24 5 27 27 H 1.09000 * 109.47463 * 89.97189 * 1 2 3 28 28 H 1.08996 * 109.47571 * 209.97825 * 1 2 3 29 29 H 1.09000 * 109.47015 * 329.97725 * 1 2 3 30 30 H 1.08995 * 109.47110 * 275.00168 * 9 8 6 31 31 H 1.08998 * 109.47368 * 35.00612 * 9 8 6 32 32 H 1.09005 * 109.47258 * 155.00581 * 9 8 6 33 33 H 1.09008 * 109.45816 * 0.27392 * 10 8 6 34 34 H 1.09001 * 109.49928 * 298.56907 * 11 10 8 35 35 H 1.09004 * 109.49927 * 58.66035 * 11 10 8 36 36 H 1.09009 * 109.59702 * 294.86881 * 12 11 10 37 37 H 1.08995 * 109.70544 * 174.50755 * 12 11 10 38 38 H 0.96999 * 120.00726 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.58725 * 293.82340 * 22 13 12 40 40 H 1.09001 * 109.70325 * 173.45957 * 22 13 12 41 41 H 1.08999 * 109.49749 * 301.33885 * 23 10 8 42 42 H 1.08996 * 109.49383 * 61.40462 * 23 10 8 43 43 H 1.09004 * 109.46980 * 270.23448 * 26 25 24 44 44 H 1.09005 * 109.46777 * 30.22358 * 26 25 24 45 45 H 1.08998 * 109.47924 * 150.22406 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3116 1.0897 0.0000 4 17 1.8236 2.7558 -0.0009 5 6 3.6338 0.5845 -0.0006 6 6 4.8774 1.3806 -0.0014 7 8 4.8238 2.5920 0.0866 8 7 6.0720 0.7643 -0.0996 9 6 6.1338 -0.6832 -0.3171 10 6 7.3086 1.5427 0.0050 11 6 8.1135 1.3975 -1.2885 12 6 9.3888 2.2405 -1.1892 13 7 10.1204 1.8497 0.0236 14 6 11.4366 1.4779 -0.0450 15 1 11.8248 1.0297 -0.9477 16 6 12.2717 1.6770 1.0457 17 7 11.9205 2.5131 1.9995 18 14 13.8943 0.7585 1.1596 19 1 14.9630 1.5592 0.5099 20 1 14.2393 0.5383 2.5871 21 1 13.7706 -0.5521 0.4723 22 6 9.4132 1.8658 1.3113 23 6 8.1375 1.0272 1.1837 24 7 3.5455 -0.7308 -0.0059 25 7 2.3126 -1.0914 -0.0006 26 6 1.8443 -2.4796 0.0000 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3634 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 6.0644 -1.1978 0.6412 31 1 5.3053 -0.9904 -0.9553 32 1 7.0776 -0.9383 -0.7990 33 1 7.0642 2.5929 0.1647 34 1 8.3796 0.3508 -1.4360 35 1 7.5140 1.7430 -2.1308 36 1 9.1254 3.2968 -1.1325 37 1 10.0137 2.0663 -2.0650 38 1 12.5042 2.6526 2.7616 39 1 9.1517 2.8913 1.5718 40 1 10.0521 1.4432 2.0868 41 1 7.5551 1.1090 2.1014 42 1 8.4029 -0.0161 1.0131 43 1 1.7274 -2.8240 -1.0275 44 1 2.5721 -3.1082 0.5133 45 1 0.8854 -2.5395 0.5147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006074321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:00 Heat of formation + Delta-G solvation = 73.255979 kcal Electronic energy + Delta-G solvation = -27921.674293 eV Core-core repulsion = 24003.224379 eV Total energy + Delta-G solvation = -3918.449914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.00656 -39.60569 -37.29724 -36.58275 -35.02497 -33.91462 -32.83968 -32.29541 -30.19127 -29.58838 -27.89087 -27.33019 -26.67729 -25.08334 -23.31612 -22.11120 -21.59202 -21.04118 -19.13318 -18.77736 -17.31879 -16.89870 -16.79879 -16.35259 -15.76837 -15.09882 -14.98598 -14.70508 -14.04680 -13.84531 -13.75178 -13.57375 -13.43387 -13.28829 -13.11905 -12.94948 -12.79151 -12.62416 -12.47294 -12.44003 -12.16323 -11.93949 -11.40885 -11.22223 -11.07119 -10.76544 -10.68138 -10.65936 -10.30799 -10.14926 -10.03107 -9.77444 -9.64458 -9.45559 -9.38474 -8.91298 -8.47066 -8.18075 -6.63105 -5.75112 -3.17253 1.33666 1.64206 1.70676 2.47183 3.21508 3.40075 3.43682 3.46887 3.49115 4.03672 4.15482 4.45770 4.53051 4.53653 4.61358 4.86033 5.02241 5.03545 5.29141 5.36464 5.37674 5.41979 5.53135 5.55032 5.61077 5.71495 5.84681 5.93595 6.04880 6.15433 6.33295 6.34151 6.42896 6.57535 6.66630 6.69572 6.84122 7.00257 7.03721 7.39832 7.49112 7.64749 7.72961 7.83641 8.38766 8.49188 9.25044 9.88639 10.46240 11.33778 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022831 B = 0.002608 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.106939 B =10731.908194 C =11394.679804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.022 3.978 3 C -0.104 4.104 4 Cl -0.009 7.009 5 C 0.010 3.990 6 C 0.592 3.408 7 O -0.521 6.521 8 N -0.594 5.594 9 C 0.084 3.916 10 C 0.147 3.853 11 C -0.138 4.138 12 C 0.148 3.852 13 N -0.592 5.592 14 C -0.253 4.253 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.901 3.099 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.175 3.825 23 C -0.144 4.144 24 N -0.243 5.243 25 N -0.284 5.284 26 C 0.087 3.913 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.021 0.979 37 H 0.057 0.943 38 H 0.254 0.746 39 H 0.021 0.979 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.032 -11.049 -4.375 28.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 C -0.142 4.142 4 Cl 0.020 6.980 5 C -0.151 4.151 6 C 0.377 3.623 7 O -0.395 6.395 8 N -0.326 5.326 9 C -0.059 4.059 10 C 0.045 3.955 11 C -0.178 4.178 12 C 0.021 3.979 13 N -0.315 5.315 14 C -0.382 4.382 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.731 3.269 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.049 3.951 23 C -0.184 4.184 24 N -0.078 5.078 25 N -0.072 5.072 26 C -0.053 4.053 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.039 0.961 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.119 0.881 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -25.366 -11.315 -4.179 28.088 hybrid contribution 0.308 0.112 0.170 0.369 sum -25.058 -11.203 -4.009 27.739 Atomic orbital electron populations 1.20393 0.85925 1.04240 1.03691 1.21088 0.95356 0.85851 1.08001 1.20516 0.92095 0.87737 1.13809 1.98357 1.90776 1.11793 1.97100 1.21968 0.94384 0.89376 1.09378 1.16885 0.81473 0.86340 0.77622 1.90825 1.86018 1.12521 1.50141 1.47986 1.05604 1.08963 1.70009 1.21876 1.02721 0.79824 1.01530 1.21239 0.81455 0.96442 0.96358 1.22377 0.98013 1.01584 0.95823 1.20866 0.90990 0.94930 0.91095 1.44086 1.08188 1.77501 1.01723 1.19151 0.85181 1.33146 1.00738 0.91729 1.25053 0.97641 0.97921 0.99009 1.70035 1.37877 1.34860 1.11791 0.86329 0.83860 0.79867 0.76891 1.21410 1.21599 1.20528 1.20733 0.89184 0.95806 0.89411 1.22556 0.98632 1.01312 0.95911 1.73934 1.00988 1.13769 1.19104 1.45420 1.02928 1.07310 1.51591 1.22212 1.01819 0.76537 1.04696 0.89870 0.90709 0.89271 0.92764 0.90494 0.90934 0.88533 0.92047 0.92860 0.96146 0.92476 0.93619 0.96099 0.89340 0.93104 0.92388 0.89414 0.88088 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 9.99 36.01 0.36 -0.07 16 2 C 0.02 0.21 6.94 -81.90 -0.57 -0.36 16 3 C -0.10 -1.38 6.79 -39.32 -0.27 -1.64 16 4 Cl -0.01 -0.12 27.94 -51.86 -1.45 -1.57 16 5 C 0.01 0.15 6.77 -82.76 -0.56 -0.41 16 6 C 0.59 10.49 7.67 -12.41 -0.10 10.40 16 7 O -0.52 -10.65 15.23 5.30 0.08 -10.57 16 8 N -0.59 -10.00 2.76 -175.07 -0.48 -10.48 16 9 C 0.08 1.16 8.40 59.85 0.50 1.66 16 10 C 0.15 2.78 2.47 -67.89 -0.17 2.61 16 11 C -0.14 -2.55 5.32 -26.61 -0.14 -2.69 16 12 C 0.15 3.22 6.52 -3.71 -0.02 3.19 16 13 N -0.59 -15.09 2.99 -172.32 -0.52 -15.61 16 14 C -0.25 -6.98 9.58 -15.06 -0.14 -7.13 16 15 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 16 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 17 N -0.90 -26.53 11.25 55.49 0.62 -25.90 16 18 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.18 4.29 5.30 -3.71 -0.02 4.27 16 23 C -0.14 -2.90 5.34 -26.61 -0.14 -3.04 16 24 N -0.24 -3.01 8.68 33.42 0.29 -2.72 16 25 N -0.28 -2.59 3.72 -63.68 -0.24 -2.83 16 26 C 0.09 0.32 11.12 59.85 0.67 0.99 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.20 7.02 -51.93 -0.36 -0.16 16 29 H 0.09 0.47 8.03 -51.93 -0.42 0.05 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.98 5.85 -51.93 -0.30 0.68 16 32 H 0.07 0.98 6.47 -51.93 -0.34 0.65 16 33 H 0.10 2.04 6.91 -51.92 -0.36 1.69 16 34 H 0.06 1.11 6.72 -51.93 -0.35 0.76 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 37 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 38 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.09 2.40 6.11 -51.93 -0.32 2.08 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.06 1.15 7.72 -51.93 -0.40 0.75 16 43 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.10 0.11 6.98 -51.93 -0.36 -0.25 16 LS Contribution 371.66 15.07 5.60 5.60 Total: -1.00 -34.28 371.66 -8.36 -42.64 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -6.55 Total: -3.08 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -0.69 Total: 7.76 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.32 Total: -57.53 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.45 Total: -1.57 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.28 -8.36 -42.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006074321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.892 kcal (2) G-P(sol) polarization free energy of solvation -34.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds