Wall clock time and date at job start Sat Apr 11 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34234 * 126.28393 * 2 1 4 4 H 0.97003 * 125.73150 * 359.96484 * 3 2 1 5 5 N 1.39925 * 108.52386 * 179.97438 * 3 2 1 6 6 C 1.30529 * 108.89331 * 359.75517 * 5 3 2 7 7 Cl 1.73608 * 126.00388 * 180.26374 * 6 5 3 8 8 C 1.38065 * 126.27810 * 179.97438 * 2 1 3 9 9 C 1.47386 * 126.42646 * 359.96772 * 8 2 1 10 10 O 1.21604 * 120.00347 * 89.99296 * 9 8 2 11 11 N 1.34776 * 119.99742 * 269.99948 * 9 8 2 12 12 C 1.46501 * 120.00063 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.47462 * 325.00429 * 12 11 9 14 14 C 1.53004 * 109.46718 * 84.99820 * 12 11 9 15 15 C 1.52999 * 109.47492 * 204.99827 * 12 11 9 16 16 H 1.08999 * 109.49716 * 299.93963 * 15 12 11 17 17 C 1.53042 * 109.52252 * 179.85520 * 15 12 11 18 18 C 1.53040 * 109.53399 * 178.67024 * 17 15 12 19 19 C 1.52757 * 109.38837 * 61.23930 * 18 17 15 20 20 N 1.46933 * 109.00863 * 305.59166 * 19 18 17 21 21 C 1.36935 * 120.62781 * 233.58305 * 20 19 18 22 22 H 1.07995 * 119.99873 * 152.09995 * 21 20 19 23 23 C 1.38811 * 119.99806 * 332.09376 * 21 20 19 24 24 N 1.31615 * 120.00651 * 335.28172 * 23 21 20 25 25 Si 1.86803 * 119.99607 * 155.00135 * 23 21 20 26 26 H 1.48496 * 109.47436 * 60.00138 * 25 23 21 27 27 H 1.48503 * 109.47168 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47355 * 300.00110 * 25 23 21 29 29 C 1.46923 * 118.73785 * 53.30252 * 20 19 18 30 30 H 1.08997 * 109.46981 * 270.00222 * 1 2 3 31 31 H 1.09004 * 109.46939 * 29.99707 * 1 2 3 32 32 H 1.08995 * 109.46984 * 149.99971 * 1 2 3 33 33 H 0.96998 * 120.00042 * 359.97438 * 11 9 8 34 34 H 1.09007 * 109.47097 * 60.00564 * 14 12 11 35 35 H 1.09001 * 109.46965 * 179.97438 * 14 12 11 36 36 H 1.08994 * 109.47208 * 300.00119 * 14 12 11 37 37 H 1.08990 * 109.46013 * 298.68790 * 17 15 12 38 38 H 1.09000 * 109.45871 * 58.64982 * 17 15 12 39 39 H 1.09003 * 109.50007 * 181.32125 * 18 17 15 40 40 H 1.09008 * 109.49676 * 301.38120 * 18 17 15 41 41 H 1.08994 * 109.51278 * 185.70471 * 19 18 17 42 42 H 1.09000 * 109.43033 * 65.42089 * 19 18 17 43 43 H 0.97009 * 119.99439 * 353.96783 * 24 23 21 44 44 H 1.09006 * 109.58528 * 66.43409 * 29 20 19 45 45 H 1.09002 * 109.58420 * 186.71480 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3014 1.0821 0.0000 4 1 2.0019 2.0047 -0.0005 5 7 3.6340 0.6552 0.0006 6 6 3.6598 -0.6498 0.0062 7 17 5.0842 -1.6423 0.0156 8 6 2.3240 -1.1130 0.0005 9 6 1.8858 -2.5202 0.0018 10 8 1.7044 -3.1016 -1.0508 11 7 1.6860 -3.1627 1.1696 12 6 1.2499 -4.5613 1.1710 13 1 0.5785 -4.7334 0.3298 14 6 2.4700 -5.4760 1.0451 15 6 0.5171 -4.8658 2.4791 16 1 1.1885 -4.6950 3.3205 17 6 0.0579 -6.3257 2.4801 18 6 -0.6461 -6.6397 3.8022 19 6 -1.8762 -5.7455 3.9466 20 7 -1.4675 -4.3419 3.7987 21 6 -1.7865 -3.4177 4.7574 22 1 -1.1564 -2.5531 4.9048 23 6 -2.9199 -3.5921 5.5397 24 7 -3.9245 -4.3144 5.0911 25 14 -3.0160 -2.8080 7.2324 26 1 -2.8929 -1.3338 7.1029 27 1 -4.3195 -3.1430 7.8599 28 1 -1.9117 -3.3242 8.0806 29 6 -0.7046 -3.9503 2.6057 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8901 -0.5138 32 1 -0.3633 -0.8899 -0.5138 33 1 1.8310 -2.6991 2.0092 34 1 3.1415 -5.3039 1.8864 35 1 2.1456 -6.5166 1.0465 36 1 2.9921 -5.2591 0.1132 37 1 -0.6328 -6.4897 1.6531 38 1 0.9231 -6.9786 2.3653 39 1 -0.9522 -7.6859 3.8119 40 1 0.0365 -6.4528 4.6312 41 1 -2.3213 -5.8948 4.9303 42 1 -2.6012 -5.9984 3.1730 43 1 -3.9111 -4.6520 4.1817 44 1 -1.3322 -4.0538 1.7204 45 1 -0.3792 -2.9146 2.7038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025436741.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:05 Heat of formation + Delta-G solvation = 35.235843 kcal Electronic energy + Delta-G solvation = -28165.109805 eV Core-core repulsion = 24245.011214 eV Total energy + Delta-G solvation = -3920.098591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.79213 -39.57951 -37.94722 -37.07785 -35.35698 -33.21808 -32.96728 -31.84730 -30.60066 -30.48281 -28.45428 -27.71137 -25.18422 -23.90598 -22.47574 -22.23566 -22.02852 -20.41682 -20.04388 -19.08776 -18.08911 -17.37659 -16.61377 -16.09576 -15.52131 -15.44310 -14.88322 -14.55592 -14.25476 -13.86806 -13.75376 -13.64728 -13.47878 -13.38895 -13.33931 -12.83489 -12.69651 -12.52076 -12.33482 -12.20862 -11.97522 -11.87673 -11.57337 -11.12182 -11.02624 -10.92168 -10.69283 -10.33883 -10.22847 -10.08615 -10.06824 -9.88873 -9.74964 -9.70292 -9.28844 -9.03082 -8.91698 -8.38619 -6.89709 -6.08575 -3.25407 1.18290 1.24550 1.91130 2.55397 2.60970 3.37907 3.45566 3.50080 3.67613 4.22615 4.53286 4.54964 4.74021 4.87354 4.98991 5.19113 5.22862 5.31437 5.34105 5.43339 5.48093 5.52159 5.54219 5.68592 5.72105 5.74001 5.96579 6.00165 6.09191 6.21452 6.21695 6.36936 6.47660 6.49571 6.57815 6.65402 6.71095 6.73074 6.83865 6.96812 7.11014 7.21088 7.60736 7.96208 8.29053 8.55451 9.10049 9.82577 10.28278 11.19522 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012096 B = 0.003449 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.353153 B = 8116.585257 C = 9417.569585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.151 3.849 3 N -0.447 5.447 4 H 0.449 0.551 5 N -0.279 5.279 6 C 0.161 3.839 7 Cl 0.019 6.981 8 C -0.273 4.273 9 C 0.599 3.401 10 O -0.533 6.533 11 N -0.707 5.707 12 C 0.148 3.852 13 H 0.087 0.913 14 C -0.162 4.162 15 C -0.111 4.111 16 H 0.072 0.928 17 C -0.101 4.101 18 C -0.136 4.136 19 C 0.149 3.851 20 N -0.598 5.598 21 C -0.349 4.349 22 H 0.054 0.946 23 C -0.023 4.023 24 N -0.915 5.915 25 Si 1.062 2.938 26 H -0.294 1.294 27 H -0.285 1.285 28 H -0.294 1.294 29 C 0.159 3.841 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.402 0.598 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.015 0.985 43 H 0.269 0.731 44 H 0.015 0.985 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.770 5.921 -9.502 16.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.019 3.981 3 N -0.157 5.157 4 H 0.295 0.705 5 N -0.104 5.104 6 C -0.032 4.032 7 Cl 0.047 6.953 8 C -0.288 4.288 9 C 0.383 3.617 10 O -0.409 6.409 11 N -0.357 5.357 12 C 0.044 3.956 13 H 0.105 0.895 14 C -0.220 4.220 15 C -0.132 4.132 16 H 0.091 0.909 17 C -0.139 4.139 18 C -0.176 4.176 19 C 0.023 3.977 20 N -0.322 5.322 21 C -0.478 4.478 22 H 0.072 0.928 23 C -0.225 4.225 24 N -0.555 5.555 25 Si 0.892 3.108 26 H -0.221 1.221 27 H -0.211 1.211 28 H -0.221 1.221 29 C 0.032 3.968 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.236 0.764 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.033 0.967 43 H 0.080 0.920 44 H 0.033 0.967 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.526 6.579 -8.863 16.695 hybrid contribution 0.744 -0.069 -0.977 1.230 sum 13.270 6.509 -9.841 17.757 Atomic orbital electron populations 1.20704 0.85299 1.05164 1.05141 1.21499 0.95006 0.85862 0.95779 1.45845 1.02960 1.08727 1.58147 0.70504 1.77132 0.96661 1.10694 1.25921 1.22524 0.88670 0.90490 1.01526 1.98419 1.35331 1.64822 1.96750 1.19817 0.91055 0.94700 1.23231 1.17053 0.76637 0.84057 0.83974 1.90782 1.50997 1.67700 1.31431 1.46093 1.67987 1.13437 1.08224 1.21067 0.95598 0.79468 0.99509 0.89518 1.22205 0.98098 0.99849 1.01869 1.21959 0.98589 0.97435 0.95206 0.90933 1.21439 0.99338 0.94738 0.98410 1.21986 0.99897 0.98938 0.96750 1.20872 0.92714 0.83499 1.00634 1.44085 1.64208 1.03905 1.19977 1.19918 1.07550 1.06015 1.14325 0.92841 1.25792 0.90860 1.00789 1.05071 1.70775 1.28728 1.36963 1.19051 0.83571 0.75805 0.75312 0.76138 1.22080 1.21093 1.22092 1.20841 0.90552 0.95652 0.89713 0.88292 0.89889 0.88560 0.76356 0.92592 0.91330 0.92455 0.92560 0.92775 0.93009 0.92453 0.90409 0.96700 0.91962 0.96738 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.25 36.01 0.37 -0.48 16 2 C 0.15 1.55 7.29 -81.60 -0.60 0.96 16 3 N -0.45 -4.06 7.28 33.86 0.25 -3.81 16 4 H 0.45 2.34 8.96 -182.73 -1.64 0.71 16 5 N -0.28 -3.36 12.64 33.18 0.42 -2.94 16 6 C 0.16 2.06 7.89 -16.91 -0.13 1.93 16 7 Cl 0.02 0.23 29.19 -51.86 -1.51 -1.29 16 8 C -0.27 -3.51 5.88 -105.04 -0.62 -4.13 16 9 C 0.60 8.65 7.13 -12.54 -0.09 8.56 16 10 O -0.53 -9.39 16.77 5.27 0.09 -9.30 16 11 N -0.71 -9.40 4.47 -54.89 -0.25 -9.65 16 12 C 0.15 2.06 2.16 -67.93 -0.15 1.92 16 13 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 14 C -0.16 -2.02 9.14 37.16 0.34 -1.68 16 15 C -0.11 -1.75 1.97 -90.50 -0.18 -1.93 16 16 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 17 C -0.10 -1.58 4.86 -26.69 -0.13 -1.71 16 18 C -0.14 -2.46 6.06 -26.84 -0.16 -2.62 16 19 C 0.15 3.36 4.66 -3.93 -0.02 3.34 16 20 N -0.60 -14.21 2.86 -172.58 -0.49 -14.71 16 21 C -0.35 -9.29 9.49 -15.06 -0.14 -9.44 16 22 H 0.05 1.42 7.94 -52.49 -0.42 1.00 16 23 C -0.02 -0.63 4.69 -17.43 -0.08 -0.71 16 24 N -0.92 -26.70 12.40 55.49 0.69 -26.02 16 25 Si 1.06 24.46 29.99 -169.99 -5.10 19.36 16 26 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 29 C 0.16 3.09 5.56 -3.71 -0.02 3.07 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.92 7.96 -51.93 -0.41 0.51 16 33 H 0.40 4.96 8.40 -40.82 -0.34 4.62 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.79 6.41 -51.93 -0.33 0.46 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.73 6.37 -51.93 -0.33 0.40 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 41 H 0.08 1.99 6.30 -51.93 -0.33 1.66 16 42 H 0.02 0.35 7.87 -51.93 -0.41 -0.06 16 43 H 0.27 7.94 6.71 -40.82 -0.27 7.66 16 44 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.05 1.00 7.44 -51.93 -0.39 0.61 16 LS Contribution 379.17 15.07 5.71 5.71 Total: -1.00 -32.76 379.17 -9.67 -42.43 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -7.86 Total: 3.11 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.61 Total: -2.91 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.62 Total: -57.13 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.10 Total: 19.36 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -1.51 Total: -1.29 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.76 -9.67 -42.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025436741.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.665 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds