Wall clock time and date at job start Sat Apr 11 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34237 * 126.27912 * 2 1 4 4 H 0.96999 * 125.74104 * 359.97438 * 3 2 1 5 5 N 1.39935 * 108.52542 * 179.97438 * 3 2 1 6 6 C 1.30538 * 108.89172 * 359.75632 * 5 3 2 7 7 Cl 1.73594 * 126.00652 * 180.25796 * 6 5 3 8 8 C 1.38070 * 126.28412 * 179.97438 * 2 1 3 9 9 C 1.47383 * 126.41899 * 359.97438 * 8 2 1 10 10 O 1.21608 * 119.99643 * 90.00781 * 9 8 2 11 11 N 1.34771 * 120.00204 * 270.00392 * 9 8 2 12 12 C 1.46499 * 120.00349 * 180.02562 * 11 9 8 13 13 H 1.09009 * 109.46649 * 35.00009 * 12 11 9 14 14 C 1.52995 * 109.47103 * 275.00448 * 12 11 9 15 15 C 1.52995 * 109.47447 * 155.00043 * 12 11 9 16 16 H 1.08997 * 109.49941 * 60.06956 * 15 12 11 17 17 C 1.53038 * 109.50043 * 180.16388 * 15 12 11 18 18 C 1.53036 * 109.54290 * 181.31751 * 17 15 12 19 19 C 1.53198 * 109.30975 * 298.63486 * 18 17 15 20 20 N 1.46923 * 108.77688 * 54.63591 * 19 18 17 21 21 C 1.36931 * 120.63275 * 126.36924 * 20 19 18 22 22 H 1.07997 * 120.00128 * 331.83157 * 21 20 19 23 23 C 1.38819 * 120.00123 * 151.83518 * 21 20 19 24 24 N 1.31620 * 119.99681 * 343.06688 * 23 21 20 25 25 Si 1.86797 * 119.99949 * 163.06834 * 23 21 20 26 26 H 1.48500 * 109.47329 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47193 * 120.00037 * 25 23 21 28 28 H 1.48507 * 109.46706 * 239.99504 * 25 23 21 29 29 C 1.46923 * 118.73418 * 306.39020 * 20 19 18 30 30 H 1.08999 * 109.47044 * 270.01975 * 1 2 3 31 31 H 1.08999 * 109.47417 * 30.01828 * 1 2 3 32 32 H 1.09001 * 109.47358 * 150.01862 * 1 2 3 33 33 H 0.97000 * 119.99910 * 0.02562 * 11 9 8 34 34 H 1.09005 * 109.47441 * 180.02562 * 14 12 11 35 35 H 1.08996 * 109.47649 * 59.99721 * 14 12 11 36 36 H 1.09002 * 109.47300 * 299.99563 * 14 12 11 37 37 H 1.08998 * 109.45959 * 301.33889 * 17 15 12 38 38 H 1.09006 * 109.46051 * 61.29227 * 17 15 12 39 39 H 1.09003 * 109.50456 * 178.68537 * 18 17 15 40 40 H 1.08999 * 109.52684 * 58.60066 * 18 17 15 41 41 H 1.09001 * 109.58478 * 294.84220 * 19 18 17 42 42 H 1.09002 * 109.69986 * 174.49275 * 19 18 17 43 43 H 0.96999 * 120.00102 * 180.02562 * 24 23 21 44 44 H 1.08998 * 109.59120 * 293.81838 * 29 20 19 45 45 H 1.09008 * 109.58614 * 173.39974 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3012 1.0821 0.0000 4 1 2.0018 2.0048 -0.0004 5 7 3.6339 0.6554 0.0006 6 6 3.6599 -0.6497 0.0062 7 17 5.0841 -1.6421 0.0155 8 6 2.3240 -1.1130 0.0005 9 6 1.8858 -2.5202 0.0017 10 8 1.7048 -3.1014 -1.0511 11 7 1.6858 -3.1627 1.1693 12 6 1.2508 -4.5616 1.1705 13 1 1.7057 -5.0843 0.3290 14 6 -0.2728 -4.6220 1.0449 15 6 1.6815 -5.2286 2.4783 16 1 1.2259 -4.7071 3.3200 17 6 1.2309 -6.6912 2.4784 18 6 1.6324 -7.3504 3.7999 19 6 3.1574 -7.3143 3.9412 20 7 3.6130 -5.9250 3.7971 21 6 4.4005 -5.3459 4.7560 22 1 4.3337 -5.6769 5.7818 23 6 5.2848 -4.3334 4.4096 24 7 5.6170 -4.1527 3.1489 25 14 6.0030 -3.2275 5.7326 26 1 5.4740 -3.6346 7.0591 27 1 7.4829 -3.3501 5.7305 28 1 5.6228 -1.8181 5.4597 29 6 3.2070 -5.1686 2.6047 30 1 -0.3633 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3634 -0.8901 -0.5135 33 1 1.8299 -2.6989 2.0090 34 1 -0.5966 -5.6628 1.0462 35 1 -0.5798 -4.1469 0.1132 36 1 -0.7278 -4.0994 1.8863 37 1 0.1479 -6.7375 2.3638 38 1 1.7062 -7.2177 1.6507 39 1 1.2906 -8.3854 3.8088 40 1 1.1773 -6.8099 4.6298 41 1 3.6110 -7.9301 3.1645 42 1 3.4446 -7.6932 4.9221 43 1 6.2352 -3.4455 2.9068 44 1 3.6647 -5.6092 1.7191 45 1 3.5248 -4.1307 2.7047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025436742.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:09 Heat of formation + Delta-G solvation = 39.943033 kcal Electronic energy + Delta-G solvation = -28702.004841 eV Core-core repulsion = 24782.110369 eV Total energy + Delta-G solvation = -3919.894472 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.54194 -39.31303 -37.67536 -36.55309 -34.99374 -33.02632 -32.80249 -31.76963 -30.69856 -29.71769 -28.66906 -27.55778 -25.17735 -23.81705 -22.28550 -21.94071 -21.88317 -20.21692 -19.81150 -18.94344 -17.85707 -16.73542 -16.37472 -15.88477 -15.21503 -15.14391 -14.91462 -14.46733 -14.13172 -13.85276 -13.57029 -13.38079 -13.31879 -13.15171 -13.06706 -12.69066 -12.55566 -12.37131 -12.10820 -11.87880 -11.77275 -11.58308 -11.35558 -10.99788 -10.87461 -10.66827 -10.60757 -10.39131 -10.17030 -10.03981 -9.87522 -9.75103 -9.49310 -9.40958 -9.34423 -8.79996 -8.64075 -8.41804 -6.60299 -5.72880 -3.15695 1.44343 1.62408 2.20596 2.80455 2.88658 3.38227 3.47215 3.48512 3.64469 4.35278 4.52351 4.66061 4.91232 5.08204 5.13219 5.25460 5.37781 5.50729 5.52080 5.54862 5.58080 5.61976 5.65112 5.80301 5.85714 5.89650 6.11523 6.19533 6.22170 6.35633 6.45933 6.49477 6.54036 6.71155 6.82302 6.86414 6.90956 6.93507 7.06222 7.22006 7.40868 7.72632 7.84834 7.88429 8.49898 8.55397 9.26634 9.89891 10.47619 11.34058 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009584 B = 0.005190 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.776221 B = 5393.557686 C = 7322.156454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.136 3.864 3 N -0.452 5.452 4 H 0.445 0.555 5 N -0.281 5.281 6 C 0.161 3.839 7 Cl 0.043 6.957 8 C -0.265 4.265 9 C 0.601 3.399 10 O -0.538 6.538 11 N -0.702 5.702 12 C 0.150 3.850 13 H 0.085 0.915 14 C -0.160 4.160 15 C -0.121 4.121 16 H 0.067 0.933 17 C -0.101 4.101 18 C -0.133 4.133 19 C 0.143 3.857 20 N -0.592 5.592 21 C -0.255 4.255 22 H 0.063 0.937 23 C 0.007 3.993 24 N -0.891 5.891 25 Si 0.893 3.107 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.289 1.289 29 C 0.180 3.820 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.402 0.598 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.015 0.985 42 H 0.051 0.949 43 H 0.252 0.748 44 H 0.016 0.984 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.142 7.569 -5.536 16.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.003 3.997 3 N -0.161 5.161 4 H 0.291 0.709 5 N -0.106 5.106 6 C -0.032 4.032 7 Cl 0.071 6.929 8 C -0.281 4.281 9 C 0.384 3.616 10 O -0.415 6.415 11 N -0.351 5.351 12 C 0.045 3.955 13 H 0.103 0.897 14 C -0.219 4.219 15 C -0.142 4.142 16 H 0.085 0.915 17 C -0.139 4.139 18 C -0.172 4.172 19 C 0.017 3.983 20 N -0.314 5.314 21 C -0.384 4.384 22 H 0.081 0.919 23 C -0.192 4.192 24 N -0.534 5.534 25 Si 0.723 3.277 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.216 1.216 29 C 0.054 3.946 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.237 0.763 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.034 0.966 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.274 8.177 -6.341 16.054 hybrid contribution 0.203 0.633 1.086 1.273 sum -12.071 8.810 -5.256 15.842 Atomic orbital electron populations 1.20598 0.85919 1.04837 1.04302 1.21354 0.94658 0.86142 0.97509 1.45814 1.03270 1.08419 1.58621 0.70907 1.77183 0.96135 1.11013 1.26312 1.22823 0.89849 0.90483 1.00030 1.98502 1.34249 1.63778 1.96383 1.19875 0.91286 0.94632 1.22270 1.17025 0.76393 0.84151 0.83990 1.90759 1.51655 1.67572 1.31477 1.46014 1.67629 1.13260 1.08213 1.21012 0.93702 0.80943 0.99839 0.89665 1.22209 0.96089 1.02136 1.01423 1.22157 1.01979 0.95244 0.94771 0.91483 1.21436 0.99041 0.95463 0.98004 1.21991 0.99406 0.98591 0.97207 1.20916 0.91156 0.87668 0.98574 1.44027 1.57348 1.07082 1.22930 1.19159 1.14395 1.16403 0.88490 0.91906 1.24997 0.96941 1.01433 0.95862 1.70032 1.35254 1.32842 1.15313 0.86376 0.78721 0.80959 0.81654 1.20409 1.21783 1.21594 1.20778 0.86432 0.99066 0.88286 0.89070 0.90185 0.88835 0.76301 0.91496 0.92741 0.92805 0.93170 0.92602 0.93248 0.92534 0.96665 0.93084 0.93738 0.96558 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 10.25 36.00 0.37 -0.33 16 2 C 0.14 1.54 7.29 -81.61 -0.60 0.95 16 3 N -0.45 -4.87 7.28 33.86 0.25 -4.62 16 4 H 0.45 2.87 8.96 -182.72 -1.64 1.24 16 5 N -0.28 -4.25 12.64 33.18 0.42 -3.83 16 6 C 0.16 2.71 7.89 -16.90 -0.13 2.58 16 7 Cl 0.04 0.79 29.19 -51.86 -1.51 -0.73 16 8 C -0.27 -4.10 5.88 -105.04 -0.62 -4.72 16 9 C 0.60 10.18 7.13 -12.54 -0.09 10.09 16 10 O -0.54 -10.63 16.77 5.27 0.09 -10.54 16 11 N -0.70 -11.19 4.47 -54.90 -0.25 -11.43 16 12 C 0.15 2.38 2.16 -67.94 -0.15 2.23 16 13 H 0.09 1.54 7.58 -51.92 -0.39 1.15 16 14 C -0.16 -2.06 9.14 37.16 0.34 -1.72 16 15 C -0.12 -2.12 1.97 -90.50 -0.18 -2.30 16 16 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 17 C -0.10 -1.62 4.85 -26.69 -0.13 -1.75 16 18 C -0.13 -2.23 6.08 -26.61 -0.16 -2.40 16 19 C 0.14 2.98 6.52 -3.71 -0.02 2.95 16 20 N -0.59 -14.43 2.99 -172.32 -0.52 -14.95 16 21 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 22 H 0.06 1.68 7.88 -52.49 -0.41 1.27 16 23 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 24 N -0.89 -24.92 11.20 55.49 0.62 -24.30 16 25 Si 0.89 21.47 29.59 -169.99 -5.03 16.44 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 29 C 0.18 4.10 4.34 -3.71 -0.02 4.08 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.77 7.96 -51.93 -0.41 0.36 16 33 H 0.40 6.26 8.40 -40.82 -0.34 5.91 16 34 H 0.07 0.80 6.40 -51.93 -0.33 0.46 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.68 6.36 -51.93 -0.33 0.35 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 43 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 2.27 5.57 -51.92 -0.29 1.98 16 LS Contribution 380.24 15.07 5.73 5.73 Total: -1.00 -32.71 380.24 -9.74 -42.45 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.93 Total: 3.01 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -1.61 Total: 2.79 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.53 Total: -59.14 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Atomic # 17 Polarization: 0.79 SS G_CDS: -1.51 Total: -0.73 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.71 -9.74 -42.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025436742.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.392 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds