Wall clock time and date at job start Sat Apr 11 2020 06:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34232 * 126.28131 * 2 1 4 4 H 0.96994 * 125.73967 * 0.02562 * 3 2 1 5 5 N 1.39930 * 108.52003 * 179.88533 * 3 2 1 6 6 C 1.30532 * 108.89713 * 0.39564 * 5 3 2 7 7 Cl 1.73600 * 126.00500 * 179.80373 * 6 5 3 8 8 C 1.38066 * 126.27832 * 180.31963 * 2 1 3 9 9 C 1.47390 * 126.42401 * 359.93576 * 8 2 1 10 10 O 1.21608 * 119.99616 * 90.00816 * 9 8 2 11 11 N 1.34776 * 119.99811 * 270.00126 * 9 8 2 12 12 C 1.46506 * 119.99502 * 180.02562 * 11 9 8 13 13 H 1.08991 * 109.47398 * 35.00016 * 12 11 9 14 14 C 1.53005 * 109.46516 * 274.99477 * 12 11 9 15 15 C 1.52998 * 109.46846 * 155.00004 * 12 11 9 16 16 H 1.09000 * 109.50036 * 305.05978 * 15 12 11 17 17 C 1.53039 * 109.49523 * 184.99298 * 15 12 11 18 18 C 1.53045 * 109.53991 * 178.68243 * 17 15 12 19 19 C 1.53197 * 109.30840 * 61.36845 * 18 17 15 20 20 N 1.46924 * 108.77325 * 305.36395 * 19 18 17 21 21 C 1.36940 * 120.63351 * 233.58587 * 20 19 18 22 22 H 1.07992 * 120.00286 * 152.79991 * 21 20 19 23 23 C 1.38816 * 119.99807 * 332.80756 * 21 20 19 24 24 N 1.31617 * 120.00096 * 159.74876 * 23 21 20 25 25 Si 1.86798 * 119.99996 * 339.74986 * 23 21 20 26 26 H 1.48501 * 109.47341 * 94.89340 * 25 23 21 27 27 H 1.48504 * 109.47334 * 214.89561 * 25 23 21 28 28 H 1.48503 * 109.47221 * 334.89262 * 25 23 21 29 29 C 1.46924 * 118.74011 * 53.61636 * 20 19 18 30 30 H 1.08999 * 109.46387 * 269.68247 * 1 2 3 31 31 H 1.08996 * 109.47536 * 149.68886 * 1 2 3 32 32 H 1.08996 * 109.47317 * 29.67996 * 1 2 3 33 33 H 0.96997 * 120.00084 * 359.97438 * 11 9 8 34 34 H 1.08991 * 109.47726 * 300.00337 * 14 12 11 35 35 H 1.09000 * 109.46871 * 60.01118 * 14 12 11 36 36 H 1.09007 * 109.46935 * 179.97438 * 14 12 11 37 37 H 1.09001 * 109.46554 * 298.70384 * 17 15 12 38 38 H 1.09002 * 109.45937 * 58.67636 * 17 15 12 39 39 H 1.09000 * 109.49726 * 181.31808 * 18 17 15 40 40 H 1.09000 * 109.49640 * 301.38937 * 18 17 15 41 41 H 1.08994 * 109.59017 * 65.15627 * 19 18 17 42 42 H 1.08996 * 109.58291 * 185.58201 * 19 18 17 43 43 H 0.97003 * 120.00136 * 179.97438 * 24 23 21 44 44 H 1.09003 * 109.58665 * 186.59945 * 29 20 19 45 45 H 1.08994 * 109.59003 * 66.17281 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3014 1.0821 0.0000 4 1 2.0020 2.0047 0.0004 5 7 3.6340 0.6552 0.0027 6 6 3.6599 -0.6498 -0.0043 7 17 5.0842 -1.6423 -0.0091 8 6 2.3240 -1.1130 -0.0062 9 6 1.8858 -2.5202 -0.0127 10 8 1.7042 -3.0956 -1.0686 11 7 1.6864 -3.1693 1.1515 12 6 1.2514 -4.5683 1.1449 13 1 1.7057 -5.0861 0.3004 14 6 -0.2724 -4.6277 1.0200 15 6 1.6829 -5.2426 2.4487 16 1 2.7579 -5.1218 2.5824 17 6 1.3396 -6.7329 2.3909 18 6 1.8005 -7.4148 3.6812 19 6 1.0639 -6.7948 4.8728 20 7 1.2706 -5.3404 4.8518 21 6 1.7571 -4.6888 5.9536 22 1 2.3091 -3.7680 5.8365 23 6 1.5408 -5.2119 7.2211 24 7 2.3091 -4.8446 8.2246 25 14 0.1593 -6.4373 7.5025 26 1 0.6960 -7.8187 7.4082 27 1 -0.4246 -6.2241 8.8512 28 1 -0.8921 -6.2433 6.4717 29 6 0.9449 -4.5981 3.6264 30 1 -0.3632 -0.0057 1.0277 31 1 -0.3634 -0.8871 -0.5186 32 1 -0.3634 0.8928 -0.5088 33 1 1.8317 -2.7105 1.9936 34 1 -0.7268 -4.1099 1.8646 35 1 -0.5798 -4.1474 0.0911 36 1 -0.5962 -5.6686 1.0147 37 1 0.2618 -6.8534 2.2815 38 1 1.8442 -7.1890 1.5391 39 1 1.5768 -8.4803 3.6295 40 1 2.8745 -7.2739 3.8035 41 1 -0.0012 -7.0137 4.7980 42 1 1.4593 -7.2067 5.8012 43 1 2.1578 -5.2099 9.1104 44 1 1.2618 -3.5606 3.7325 45 1 -0.1299 -4.6378 3.4499 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025436743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:13 Heat of formation + Delta-G solvation = 46.641040 kcal Electronic energy + Delta-G solvation = -28109.287861 eV Core-core repulsion = 24189.683837 eV Total energy + Delta-G solvation = -3919.604025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.80527 -39.66962 -38.11383 -37.01646 -35.32662 -33.10941 -32.98584 -31.92582 -30.94821 -30.70721 -28.54240 -27.72827 -25.34571 -24.50947 -22.83549 -22.23431 -21.97672 -20.84174 -19.84988 -18.84728 -18.13835 -16.90168 -16.55163 -16.06841 -15.50713 -15.42376 -15.35962 -14.90213 -14.56836 -14.10508 -13.91947 -13.64865 -13.49879 -13.40366 -13.24099 -12.94514 -12.84848 -12.46777 -12.26991 -12.18240 -12.05392 -11.94437 -11.77730 -11.46911 -11.16838 -10.99785 -10.65743 -10.53458 -10.41566 -10.12052 -9.98142 -9.80974 -9.73547 -9.64129 -9.45518 -9.05382 -8.94978 -8.62459 -6.97353 -5.96074 -3.31878 1.22119 1.22794 1.91449 2.52481 2.59811 3.31507 3.35890 3.47270 3.49671 4.16077 4.47674 4.51828 4.67213 4.80896 4.93571 5.03493 5.10677 5.20799 5.29326 5.35448 5.38380 5.40147 5.52854 5.54939 5.64327 5.69649 5.83742 5.98727 6.04482 6.06922 6.16736 6.27645 6.36820 6.40840 6.53323 6.60196 6.60745 6.63711 6.71250 6.74035 6.96237 6.98742 7.58995 7.94416 8.25956 8.30983 8.92553 9.70948 10.08876 11.19815 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013399 B = 0.003242 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.221686 B = 8633.452693 C = 9030.773869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.145 3.855 3 N -0.448 5.448 4 H 0.448 0.552 5 N -0.276 5.276 6 C 0.161 3.839 7 Cl 0.024 6.976 8 C -0.271 4.271 9 C 0.599 3.401 10 O -0.534 6.534 11 N -0.709 5.709 12 C 0.149 3.851 13 H 0.085 0.915 14 C -0.166 4.166 15 C -0.115 4.115 16 H 0.078 0.922 17 C -0.101 4.101 18 C -0.135 4.135 19 C 0.125 3.875 20 N -0.605 5.605 21 C -0.260 4.260 22 H 0.084 0.916 23 C 0.024 3.976 24 N -0.909 5.909 25 Si 0.883 3.117 26 H -0.290 1.290 27 H -0.305 1.305 28 H -0.270 1.270 29 C 0.154 3.846 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.404 0.596 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.025 0.975 42 H 0.070 0.930 43 H 0.262 0.738 44 H 0.056 0.944 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.877 8.219 -17.894 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.013 3.987 3 N -0.157 5.157 4 H 0.294 0.706 5 N -0.102 5.102 6 C -0.032 4.032 7 Cl 0.051 6.949 8 C -0.286 4.286 9 C 0.382 3.618 10 O -0.411 6.411 11 N -0.360 5.360 12 C 0.045 3.955 13 H 0.103 0.897 14 C -0.224 4.224 15 C -0.136 4.136 16 H 0.096 0.904 17 C -0.139 4.139 18 C -0.174 4.174 19 C 0.000 4.000 20 N -0.328 5.328 21 C -0.388 4.388 22 H 0.102 0.898 23 C -0.175 4.175 24 N -0.552 5.552 25 Si 0.714 3.286 26 H -0.217 1.217 27 H -0.233 1.233 28 H -0.195 1.195 29 C 0.028 3.972 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.240 0.760 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.043 0.957 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.119 8.743 -18.444 20.648 hybrid contribution -0.947 -0.726 0.783 1.427 sum -4.066 8.017 -17.662 19.818 Atomic orbital electron populations 1.20659 0.85602 1.05025 1.04742 1.21421 0.94863 0.85957 0.96495 1.45838 1.03050 1.08659 1.58143 0.70566 1.77168 0.96475 1.10757 1.25770 1.22577 0.88906 0.90504 1.01166 1.98436 1.35114 1.64638 1.96676 1.19827 0.91143 0.94662 1.22985 1.17077 0.76527 0.84154 0.84017 1.90779 1.51326 1.67850 1.31109 1.46185 1.67895 1.13492 1.08401 1.21043 0.94837 0.80662 0.98975 0.89704 1.22273 0.95546 1.02584 1.01960 1.21956 1.01776 0.95800 0.94056 0.90352 1.21424 1.00764 0.94220 0.97525 1.22008 1.01353 0.98167 0.95900 1.21342 0.96665 0.84950 0.97094 1.44310 1.76054 1.01226 1.11228 1.18902 1.28065 1.08625 0.83242 0.89800 1.25258 0.98390 0.98492 0.95383 1.69837 1.37877 1.46309 1.01155 0.86936 0.84544 0.80714 0.76387 1.21733 1.23300 1.19471 1.21025 0.96018 0.94785 0.85382 0.88627 0.88711 0.89964 0.76025 0.91591 0.92720 0.91420 0.92116 0.92825 0.92768 0.91764 0.95716 0.91214 0.92802 0.92515 0.95208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 10.25 36.01 0.37 -0.22 16 2 C 0.15 1.33 7.29 -81.60 -0.60 0.73 16 3 N -0.45 -3.78 7.28 33.86 0.25 -3.54 16 4 H 0.45 2.01 8.96 -182.73 -1.64 0.38 16 5 N -0.28 -3.34 12.64 33.18 0.42 -2.92 16 6 C 0.16 2.11 7.89 -16.91 -0.13 1.97 16 7 Cl 0.02 0.30 29.19 -51.86 -1.51 -1.21 16 8 C -0.27 -3.35 5.88 -105.04 -0.62 -3.97 16 9 C 0.60 8.21 7.13 -12.54 -0.09 8.12 16 10 O -0.53 -8.92 16.77 5.27 0.09 -8.83 16 11 N -0.71 -9.04 5.01 -54.89 -0.27 -9.31 16 12 C 0.15 1.96 2.35 -67.93 -0.16 1.80 16 13 H 0.08 1.19 7.58 -51.93 -0.39 0.80 16 14 C -0.17 -1.98 8.76 37.16 0.33 -1.65 16 15 C -0.12 -1.73 2.27 -90.50 -0.21 -1.94 16 16 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 17 C -0.10 -1.48 4.89 -26.69 -0.13 -1.61 16 18 C -0.13 -2.30 6.08 -26.61 -0.16 -2.46 16 19 C 0.12 2.63 4.19 -3.71 -0.02 2.62 16 20 N -0.60 -13.67 2.77 -172.32 -0.48 -14.15 16 21 C -0.26 -7.03 10.04 -15.06 -0.15 -7.18 16 22 H 0.08 2.42 8.05 -52.49 -0.42 1.99 16 23 C 0.02 0.67 5.24 -17.43 -0.09 0.58 16 24 N -0.91 -27.48 13.97 55.49 0.78 -26.71 16 25 Si 0.88 22.01 24.35 -169.99 -4.14 17.87 16 26 H -0.29 -7.02 6.70 56.52 0.38 -6.64 16 27 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 28 H -0.27 -6.54 6.45 56.52 0.36 -6.17 16 29 C 0.15 2.75 5.26 -3.71 -0.02 2.73 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.65 7.96 -51.93 -0.41 0.23 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.40 4.97 7.27 -40.82 -0.30 4.67 16 34 H 0.07 0.79 6.23 -51.93 -0.32 0.47 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.77 6.60 -51.93 -0.34 0.43 16 37 H 0.06 0.84 6.63 -51.93 -0.34 0.50 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.02 0.52 6.98 -51.93 -0.36 0.16 16 42 H 0.07 1.64 4.50 -51.93 -0.23 1.40 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.06 0.99 6.75 -51.93 -0.35 0.64 16 45 H 0.03 0.52 6.06 -51.93 -0.31 0.20 16 LS Contribution 368.64 15.07 5.56 5.56 Total: -1.00 -33.85 368.64 -8.59 -42.44 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.59 Total: 1.27 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.68 Total: -0.47 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.69 Total: -56.63 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.87 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -1.51 Total: -1.21 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.85 -8.59 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025436743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.077 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds