Wall clock time and date at job start Sat Apr 11 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.47035 * 2 1 4 4 N 1.35643 * 126.43568 * 264.97713 * 3 2 1 5 5 H 0.97002 * 124.93169 * 0.05971 * 4 3 2 6 6 N 1.28468 * 110.12918 * 179.76587 * 4 3 2 7 7 C 1.31821 * 110.13851 * 0.42142 * 6 4 3 8 8 C 1.47665 * 126.46019 * 179.85659 * 7 6 4 9 9 O 1.21577 * 119.99984 * 185.15080 * 8 7 6 10 10 N 1.34781 * 120.00206 * 5.14560 * 8 7 6 11 11 C 1.46497 * 119.99969 * 5.00454 * 10 8 7 12 12 C 1.53002 * 109.46929 * 273.33383 * 11 10 8 13 13 C 1.46502 * 120.00003 * 185.00073 * 10 8 7 14 14 H 1.08993 * 110.64001 * 181.68878 * 13 10 8 15 15 C 1.55160 * 110.71995 * 305.02685 * 13 10 8 16 16 C 1.54902 * 101.58130 * 153.86489 * 15 13 10 17 17 N 1.47429 * 104.83527 * 322.98710 * 16 15 13 18 18 C 1.36932 * 125.65324 * 204.16361 * 17 16 15 19 19 H 1.07992 * 120.00324 * 179.97438 * 18 17 16 20 20 C 1.38816 * 119.99721 * 359.95578 * 18 17 16 21 21 N 1.31623 * 119.99992 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99942 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47083 * 0.02562 * 22 20 18 24 24 H 1.48510 * 109.47021 * 120.00505 * 22 20 18 25 25 H 1.48498 * 109.47423 * 240.00342 * 22 20 18 26 26 C 1.47021 * 108.69916 * 24.13173 * 17 16 15 27 27 C 1.35459 * 126.43633 * 85.00023 * 3 2 1 28 28 Cl 1.73605 * 127.23620 * 359.94677 * 27 3 2 29 29 H 1.08999 * 109.46789 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47543 * 299.99478 * 1 2 3 31 31 H 1.08998 * 109.47371 * 59.99825 * 1 2 3 32 32 H 1.08996 * 109.47181 * 240.00513 * 2 1 3 33 33 H 1.08995 * 109.47573 * 119.99694 * 2 1 3 34 34 H 1.08998 * 109.46927 * 153.33416 * 11 10 8 35 35 H 1.08999 * 109.47332 * 33.32807 * 11 10 8 36 36 H 1.09003 * 109.47210 * 59.99761 * 12 11 10 37 37 H 1.09002 * 109.47504 * 180.02562 * 12 11 10 38 38 H 1.09004 * 109.47116 * 299.99806 * 12 11 10 39 39 H 1.08996 * 111.00303 * 271.94097 * 15 13 10 40 40 H 1.09000 * 111.00655 * 35.78723 * 15 13 10 41 41 H 1.09001 * 110.36796 * 204.14811 * 16 15 13 42 42 H 1.09004 * 110.46351 * 81.87503 * 16 15 13 43 43 H 0.97006 * 119.99531 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.88154 * 239.52537 * 26 17 16 45 45 H 1.08995 * 109.88387 * 118.35720 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3909 2.1485 -1.0871 5 1 2.3627 1.8298 -2.0028 6 7 2.7674 3.3232 -0.7282 7 6 2.6935 3.4428 0.5825 8 6 3.0423 4.6385 1.3756 9 8 3.0187 4.5905 2.5902 10 7 3.3870 5.7832 0.7530 11 6 3.3101 5.8747 -0.7070 12 6 4.6156 5.3632 -1.3195 13 6 3.8385 6.9359 1.5365 14 1 4.0482 7.7845 0.8855 15 6 2.7880 7.3123 2.6145 16 6 3.6731 7.9970 3.6856 17 7 4.9306 7.2274 3.6843 18 6 5.8122 7.1371 4.7281 19 1 6.7094 6.5446 4.6275 20 6 5.5528 7.8077 5.9156 21 7 4.4592 8.5297 6.0383 22 14 6.7551 7.6840 7.3399 23 1 7.8963 6.8174 6.9504 24 1 7.2574 9.0389 7.6827 25 1 6.0677 7.0981 8.5186 26 6 5.0808 6.5721 2.3767 27 6 2.2109 2.2110 1.0856 28 17 1.9101 1.7997 2.7452 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5137 0.8899 34 1 3.1547 6.9135 -0.9982 35 1 2.4785 5.2683 -1.0658 36 1 4.7711 4.3244 -1.0282 37 1 4.5587 5.4316 -2.4059 38 1 5.4473 5.9695 -0.9607 39 1 2.0500 8.0078 2.2148 40 1 2.3053 6.4220 3.0175 41 1 3.1957 7.9419 4.6639 42 1 3.8637 9.0356 3.4153 43 1 4.2778 8.9980 6.8683 44 1 5.1362 5.4914 2.5078 45 1 5.9819 6.9343 1.8820 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033859458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:18 Heat of formation + Delta-G solvation = 79.004177 kcal Electronic energy + Delta-G solvation = -28487.784577 eV Core-core repulsion = 24569.583923 eV Total energy + Delta-G solvation = -3918.200654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.96777 -39.69903 -36.67228 -36.43722 -35.40613 -34.54987 -32.42954 -31.65475 -30.15338 -29.57330 -28.77846 -27.08747 -24.84036 -24.18959 -23.76958 -22.67093 -21.33139 -20.65744 -19.97999 -18.33623 -18.16004 -16.86411 -16.54629 -16.15842 -15.46365 -15.13851 -14.63578 -14.52240 -14.39982 -14.26144 -13.96293 -13.67894 -13.60500 -13.16304 -12.91801 -12.44511 -12.19916 -12.14550 -12.02702 -11.87606 -11.63466 -11.57373 -11.36443 -11.32118 -10.91443 -10.82086 -10.73976 -10.65218 -10.57325 -10.34849 -9.94892 -9.69465 -9.47499 -9.38982 -9.05881 -8.88915 -8.47133 -8.15210 -6.61885 -5.46855 -2.86783 1.39522 1.72310 1.97926 2.75507 3.24945 3.51577 3.56269 3.57143 3.59474 4.12028 4.34684 4.45269 4.65687 4.81216 4.90010 5.08198 5.10754 5.16184 5.39518 5.43384 5.52061 5.58238 5.59901 5.64851 5.71294 5.75767 5.79968 5.87326 5.94707 5.99576 6.05706 6.34064 6.48753 6.61916 6.69804 6.76025 6.78980 6.93120 7.34383 7.50622 7.68357 7.80449 7.82649 8.05594 8.54288 8.58544 9.40640 10.01880 10.67397 11.57127 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.003458 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.502305 B = 8094.306941 C = 9214.529856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C 0.028 3.972 4 N -0.382 5.382 5 H 0.448 0.552 6 N -0.240 5.240 7 C 0.015 3.985 8 C 0.586 3.414 9 O -0.483 6.483 10 N -0.593 5.593 11 C 0.108 3.892 12 C -0.159 4.159 13 C 0.136 3.864 14 H 0.089 0.911 15 C -0.159 4.159 16 C 0.159 3.841 17 N -0.596 5.596 18 C -0.211 4.211 19 H 0.075 0.925 20 C -0.014 4.014 21 N -0.923 5.923 22 Si 0.912 3.088 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.291 1.291 26 C 0.135 3.865 27 C -0.100 4.100 28 Cl -0.003 7.003 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.008 0.992 43 H 0.249 0.751 44 H 0.033 0.967 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.741 -16.002 -20.556 27.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.099 4.099 4 N -0.097 5.097 5 H 0.293 0.707 6 N -0.076 5.076 7 C -0.147 4.147 8 C 0.370 3.630 9 O -0.353 6.353 10 N -0.327 5.327 11 C -0.015 4.015 12 C -0.218 4.218 13 C 0.034 3.966 14 H 0.107 0.893 15 C -0.199 4.199 16 C 0.033 3.967 17 N -0.322 5.322 18 C -0.339 4.339 19 H 0.093 0.907 20 C -0.209 4.209 21 N -0.572 5.572 22 Si 0.744 3.256 23 H -0.207 1.207 24 H -0.220 1.220 25 H -0.219 1.219 26 C 0.008 3.992 27 C -0.138 4.138 28 Cl 0.025 6.975 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.107 0.893 41 H 0.124 0.876 42 H 0.026 0.974 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -8.431 -15.360 -20.435 26.918 hybrid contribution 0.499 -0.621 0.771 1.109 sum -7.932 -15.981 -19.664 26.551 Atomic orbital electron populations 1.21767 0.93639 1.02482 1.02826 1.20161 0.96778 0.88091 1.04349 1.21138 1.05499 0.96781 0.86482 1.43330 1.48083 1.08805 1.09472 0.70683 1.73945 1.18005 1.01632 1.13979 1.22150 1.06724 0.96384 0.89478 1.16852 0.78558 0.80986 0.86561 1.90943 1.50069 1.82446 1.11834 1.47831 1.65483 1.12450 1.06917 1.21685 0.99040 1.01499 0.79321 1.22105 0.97720 1.02007 0.99929 1.22235 0.96323 0.85643 0.92428 0.89274 1.23506 0.97500 1.01668 0.97176 1.21833 0.85294 0.91147 0.98393 1.44309 1.22815 1.55653 1.09406 1.19096 0.99921 1.24252 0.90674 0.90702 1.24750 0.98112 1.00104 0.97955 1.69821 1.25660 1.36194 1.25575 0.86017 0.79977 0.77024 0.82629 1.20654 1.21963 1.21853 1.21461 0.93368 0.96929 0.87421 1.20539 1.10394 0.94504 0.88324 1.98382 1.94276 1.92793 1.12007 0.91502 0.91636 0.92635 0.90240 0.88739 0.90954 0.89370 0.92169 0.92315 0.92809 0.93013 0.89332 0.87576 0.97359 0.94014 0.94914 0.96590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.89 37.15 0.37 -0.45 16 2 C -0.05 -0.32 6.36 -27.89 -0.18 -0.50 16 3 C 0.03 0.26 6.51 -81.90 -0.53 -0.28 16 4 N -0.38 -3.05 6.86 33.62 0.23 -2.82 16 5 H 0.45 1.68 8.96 -190.44 -1.71 -0.03 16 6 N -0.24 -2.73 7.15 33.42 0.24 -2.50 16 7 C 0.01 0.22 6.63 -82.76 -0.55 -0.33 16 8 C 0.59 10.75 6.73 -12.41 -0.08 10.67 16 9 O -0.48 -10.80 12.28 5.30 0.07 -10.74 16 10 N -0.59 -9.86 2.54 -165.19 -0.42 -10.28 16 11 C 0.11 1.34 5.67 -4.04 -0.02 1.31 16 12 C -0.16 -1.81 9.68 37.16 0.36 -1.45 16 13 C 0.14 2.63 3.45 -66.09 -0.23 2.41 16 14 H 0.09 1.53 7.81 -51.93 -0.41 1.13 16 15 C -0.16 -3.44 6.39 -24.58 -0.16 -3.59 16 16 C 0.16 4.18 5.89 -2.53 -0.01 4.16 16 17 N -0.60 -16.63 3.39 -170.07 -0.58 -17.20 16 18 C -0.21 -6.33 10.27 -15.06 -0.15 -6.49 16 19 H 0.08 2.20 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.43 5.49 -17.43 -0.10 -0.53 16 21 N -0.92 -28.46 10.09 55.49 0.56 -27.90 16 22 Si 0.91 23.44 29.55 -169.99 -5.02 18.42 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 26 C 0.14 3.17 6.52 -3.06 -0.02 3.15 16 27 C -0.10 -1.35 6.79 -39.32 -0.27 -1.62 16 28 Cl 0.00 -0.05 28.04 -51.86 -1.45 -1.50 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.79 7.87 -51.93 -0.41 0.38 16 35 H 0.09 1.03 5.73 -51.93 -0.30 0.73 16 36 H 0.06 0.75 6.56 -51.93 -0.34 0.41 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 2.09 5.64 -51.93 -0.29 1.80 16 41 H 0.11 3.16 5.87 -51.93 -0.30 2.86 16 42 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.03 0.83 6.43 -51.93 -0.33 0.49 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 369.93 15.07 5.57 5.57 Total: -1.00 -36.00 369.93 -10.25 -46.25 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -7.86 Total: -3.76 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -1.58 Total: 6.46 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: 0.03 Total: -60.71 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.07 Total: -10.74 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -5.02 Total: 18.42 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.45 Total: -1.50 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.00 -10.25 -46.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033859458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.254 kcal (2) G-P(sol) polarization free energy of solvation -36.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds