Wall clock time and date at job start Sat Apr 11 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.46957 * 2 1 4 4 N 1.35645 * 126.43074 * 264.97501 * 3 2 1 5 5 H 0.96995 * 124.93367 * 359.97438 * 4 3 2 6 6 N 1.28466 * 110.12618 * 180.02562 * 4 3 2 7 7 C 1.31818 * 110.14023 * 359.97438 * 6 4 3 8 8 C 1.47670 * 126.46024 * 180.02562 * 7 6 4 9 9 O 1.21582 * 119.99759 * 176.24780 * 8 7 6 10 10 N 1.34771 * 120.00163 * 356.24867 * 8 7 6 11 11 C 1.46501 * 119.99784 * 6.22556 * 10 8 7 12 12 C 1.52997 * 109.47659 * 277.09745 * 11 10 8 13 13 C 1.46504 * 120.00085 * 186.23045 * 10 8 7 14 14 H 1.09005 * 110.91371 * 10.58112 * 13 10 8 15 15 C 1.55149 * 111.00392 * 246.67999 * 13 10 8 16 16 C 1.54326 * 102.94300 * 277.42501 * 15 13 10 17 17 N 1.47024 * 107.26922 * 337.81169 * 16 15 13 18 18 C 1.36938 * 125.64384 * 178.98519 * 17 16 15 19 19 H 1.08003 * 119.99896 * 179.97438 * 18 17 16 20 20 C 1.38808 * 120.00126 * 359.97364 * 18 17 16 21 21 N 1.31615 * 120.00258 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99746 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47604 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46944 * 119.99865 * 22 20 18 25 25 H 1.48502 * 109.47476 * 239.99588 * 22 20 18 26 26 C 1.47419 * 108.70445 * 358.93597 * 17 16 15 27 27 C 1.35459 * 126.43447 * 85.29785 * 3 2 1 28 28 Cl 1.73598 * 127.24123 * 359.97438 * 27 3 2 29 29 H 1.08998 * 109.47288 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47411 * 300.00391 * 1 2 3 31 31 H 1.08998 * 109.47032 * 60.00222 * 1 2 3 32 32 H 1.08997 * 109.46847 * 239.99915 * 2 1 3 33 33 H 1.09000 * 109.46647 * 119.99420 * 2 1 3 34 34 H 1.08999 * 109.47422 * 37.10690 * 11 10 8 35 35 H 1.09008 * 109.46843 * 157.10275 * 11 10 8 36 36 H 1.09008 * 109.46560 * 60.00357 * 12 11 10 37 37 H 1.08993 * 109.47429 * 180.02562 * 12 11 10 38 38 H 1.08999 * 109.47476 * 300.00913 * 12 11 10 39 39 H 1.09007 * 110.72152 * 35.79084 * 15 13 10 40 40 H 1.08999 * 110.72154 * 159.06564 * 15 13 10 41 41 H 1.09010 * 109.88063 * 97.22369 * 16 15 13 42 42 H 1.09001 * 109.88677 * 218.38608 * 16 15 13 43 43 H 0.97002 * 119.99785 * 179.97438 * 21 20 18 44 44 H 1.09003 * 110.36950 * 265.29386 * 26 17 16 45 45 H 1.08998 * 110.36424 * 142.97183 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3909 2.1485 -1.0872 5 1 2.3639 1.8293 -2.0027 6 7 2.7726 3.3213 -0.7278 7 6 2.6933 3.4429 0.5823 8 6 3.0420 4.6388 1.3754 9 8 2.8588 4.6457 2.5773 10 7 3.5633 5.7224 0.7669 11 6 3.6576 5.7675 -0.6944 12 6 4.9201 5.0312 -1.1470 13 6 4.0357 6.8553 1.5667 14 1 4.0706 6.5967 2.6251 15 6 3.1539 8.1096 1.3295 16 6 3.7419 8.7054 0.0330 17 7 5.1176 8.2022 -0.0938 18 6 5.9779 8.4818 -1.1218 19 1 6.9729 8.0616 -1.1227 20 6 5.5714 9.3052 -2.1627 21 7 4.3588 9.8169 -2.1619 22 14 6.7454 9.6870 -3.5647 23 1 8.0377 8.9940 -3.3309 24 1 6.1570 9.2174 -4.8448 25 1 6.9744 11.1526 -3.6334 26 6 5.4176 7.3480 1.0696 27 6 2.2162 2.2091 1.0861 28 17 1.9243 1.7948 2.7465 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.7813 5.2876 -1.1301 35 1 3.7048 6.8056 -1.0236 36 1 4.8730 3.9931 -0.8178 37 1 4.9905 5.0652 -2.2341 38 1 5.7965 5.5111 -0.7113 39 1 2.1112 7.8264 1.1855 40 1 3.2530 8.8128 2.1565 41 1 3.1496 8.3849 -0.8242 42 1 3.7494 9.7936 0.0950 43 1 4.0748 10.3926 -2.8892 44 1 5.9160 7.9272 1.8471 45 1 6.0366 6.5024 0.7697 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033859459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:20 Heat of formation + Delta-G solvation = 79.392305 kcal Electronic energy + Delta-G solvation = -28847.688711 eV Core-core repulsion = 24929.504888 eV Total energy + Delta-G solvation = -3918.183823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.88061 -39.61901 -37.35459 -36.51002 -34.80693 -34.27122 -32.48319 -31.57207 -30.16132 -29.44785 -28.75768 -27.41696 -24.70535 -24.15525 -23.98341 -22.33656 -21.25780 -20.34138 -20.02577 -18.42073 -18.03314 -16.89241 -16.57957 -16.12721 -15.75000 -15.11216 -14.69162 -14.55420 -14.35225 -14.12147 -13.87833 -13.74175 -13.29331 -12.99773 -12.68425 -12.41548 -12.15782 -12.06385 -12.00259 -11.85213 -11.72943 -11.52194 -11.24893 -11.13131 -10.95307 -10.86517 -10.71000 -10.53699 -10.36688 -10.09944 -10.01924 -9.81753 -9.62423 -9.46129 -9.18024 -8.83988 -8.63245 -8.05476 -6.81636 -5.71604 -3.04571 1.50777 1.75682 1.98874 2.83364 3.38327 3.40623 3.45363 3.47017 3.58907 4.20939 4.42335 4.49577 4.54458 4.85246 4.99910 5.13178 5.19785 5.44068 5.46539 5.49176 5.55960 5.63747 5.73303 5.78398 5.82750 5.89552 5.98326 6.13356 6.19286 6.31968 6.43011 6.47560 6.59226 6.61619 6.68713 6.73116 6.91350 7.05414 7.24999 7.56939 7.60796 7.66963 7.83023 7.96588 8.23728 8.55436 9.21482 9.81353 10.47487 11.39754 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018399 B = 0.003402 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.481950 B = 8227.596120 C = 9170.570669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C 0.026 3.974 4 N -0.381 5.381 5 H 0.449 0.551 6 N -0.223 5.223 7 C 0.012 3.988 8 C 0.590 3.410 9 O -0.533 6.533 10 N -0.570 5.570 11 C 0.091 3.909 12 C -0.144 4.144 13 C 0.125 3.875 14 H 0.098 0.902 15 C -0.156 4.156 16 C 0.174 3.826 17 N -0.601 5.601 18 C -0.220 4.220 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.908 3.092 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.124 3.876 27 C -0.101 4.101 28 Cl -0.011 7.011 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.127 0.873 36 H 0.038 0.962 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.043 0.957 43 H 0.251 0.749 44 H 0.031 0.969 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.168 -19.609 2.814 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.101 4.101 4 N -0.096 5.096 5 H 0.294 0.706 6 N -0.058 5.058 7 C -0.150 4.150 8 C 0.376 3.624 9 O -0.409 6.409 10 N -0.301 5.301 11 C -0.031 4.031 12 C -0.202 4.202 13 C 0.021 3.979 14 H 0.116 0.884 15 C -0.195 4.195 16 C 0.050 3.950 17 N -0.328 5.328 18 C -0.348 4.348 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.569 5.569 22 Si 0.739 3.261 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.002 4.002 27 C -0.138 4.138 28 Cl 0.017 6.983 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.144 0.856 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.969 -18.870 2.469 20.267 hybrid contribution 0.391 -0.325 -0.659 0.832 sum -6.578 -19.195 1.810 20.372 Atomic orbital electron populations 1.21769 0.93687 1.02399 1.02864 1.20151 0.96753 0.88149 1.04261 1.21135 1.05632 0.96792 0.86545 1.43444 1.47623 1.08951 1.09556 0.70558 1.74187 1.16421 1.01276 1.13913 1.21961 1.07318 0.96049 0.89643 1.16912 0.78271 0.81133 0.86127 1.90783 1.54619 1.82030 1.13493 1.47747 1.58707 1.15321 1.08307 1.22184 0.97974 1.05529 0.77452 1.21996 0.98707 0.98702 1.00838 1.22281 0.95492 0.85112 0.95019 0.88392 1.23270 0.98920 0.96387 1.00909 1.21225 0.84965 0.97142 0.91681 1.44541 1.11778 1.55050 1.21403 1.19023 0.94330 1.24239 0.97247 0.90537 1.24743 0.96810 1.00005 0.98765 1.69969 1.16995 1.36978 1.32951 0.86107 0.79955 0.77749 0.82327 1.20616 1.21893 1.21915 1.21943 0.93396 0.93966 0.90940 1.20450 1.11070 0.94538 0.87776 1.98345 1.94608 1.92742 1.12599 0.91558 0.91729 0.92535 0.90215 0.88874 0.90888 0.85572 0.94294 0.92578 0.92104 0.91878 0.91371 0.93184 0.93861 0.93863 0.95177 0.93355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 37.16 0.37 -0.52 16 2 C -0.05 -0.34 6.36 -27.88 -0.18 -0.52 16 3 C 0.03 0.26 6.51 -81.90 -0.53 -0.28 16 4 N -0.38 -3.76 6.86 33.62 0.23 -3.53 16 5 H 0.45 2.68 8.96 -190.45 -1.71 0.97 16 6 N -0.22 -3.10 7.06 33.42 0.24 -2.87 16 7 C 0.01 0.19 6.44 -82.76 -0.53 -0.34 16 8 C 0.59 10.94 7.62 -12.41 -0.09 10.85 16 9 O -0.53 -10.78 15.33 5.29 0.08 -10.70 16 10 N -0.57 -10.61 2.53 -164.84 -0.42 -11.03 16 11 C 0.09 1.70 4.88 -4.04 -0.02 1.68 16 12 C -0.14 -2.56 9.46 37.16 0.35 -2.21 16 13 C 0.13 2.37 3.60 -65.78 -0.24 2.14 16 14 H 0.10 1.82 7.13 -51.93 -0.37 1.45 16 15 C -0.16 -3.01 6.56 -24.90 -0.16 -3.17 16 16 C 0.17 4.05 4.31 -3.06 -0.01 4.04 16 17 N -0.60 -14.31 2.15 -170.07 -0.36 -14.67 16 18 C -0.22 -5.75 10.27 -15.06 -0.15 -5.91 16 19 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 20 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 21 N -0.92 -25.82 10.31 55.49 0.57 -25.25 16 22 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C 0.12 2.54 6.13 -2.53 -0.02 2.53 16 27 C -0.10 -1.38 6.79 -39.31 -0.27 -1.65 16 28 Cl -0.01 -0.15 28.03 -51.86 -1.45 -1.61 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 1.31 5.87 -51.93 -0.30 1.00 16 35 H 0.13 2.80 3.67 -51.92 -0.19 2.61 16 36 H 0.04 0.64 6.22 -51.92 -0.32 0.32 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 1.18 5.81 -51.93 -0.30 0.88 16 39 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.05 1.27 5.88 -51.92 -0.31 0.97 16 42 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 43 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.99 6.08 -51.93 -0.32 0.68 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -30.92 363.98 -9.80 -40.72 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.56 Total: 0.65 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -1.58 Total: 6.35 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.26 Total: -57.35 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.45 Total: -1.61 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.92 -9.80 -40.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033859459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.112 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds