Wall clock time and date at job start Sat Apr 11 2020 05:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35360 * 126.38537 * 2 1 4 4 C 1.41505 * 105.50522 * 179.97438 * 3 2 1 5 5 C 1.47713 * 126.51958 * 180.02562 * 4 3 2 6 6 O 1.21571 * 119.99995 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00013 * 179.97438 * 5 4 3 8 8 C 1.46670 * 125.33931 * 179.97438 * 7 5 4 9 9 C 1.53728 * 107.94040 * 180.54764 * 8 7 5 10 10 H 1.08999 * 112.55768 * 139.72310 * 9 8 7 11 11 C 1.53692 * 109.34137 * 266.25404 * 9 8 7 12 12 N 1.46635 * 108.00733 * 127.55846 * 11 9 8 13 13 C 1.36940 * 125.32790 * 180.81330 * 12 11 9 14 14 H 1.07995 * 120.00092 * 180.02562 * 13 12 11 15 15 C 1.38811 * 119.99829 * 0.02920 * 13 12 11 16 16 N 1.31618 * 120.00284 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00077 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46965 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47484 * 119.99689 * 17 15 13 20 20 H 1.48501 * 109.47047 * 239.99964 * 17 15 13 21 21 C 1.46736 * 109.34180 * 0.83912 * 12 11 9 22 22 C 1.53928 * 106.72335 * 341.65390 * 21 12 11 23 23 H 1.08996 * 113.01216 * 150.83394 * 22 21 12 24 24 C 1.46778 * 125.33475 * 359.69856 * 7 5 4 25 25 N 1.31801 * 106.96059 * 0.02562 * 4 3 2 26 26 N 1.28472 * 110.07623 * 359.71465 * 25 4 3 27 27 C 1.46498 * 124.88854 * 180.30689 * 26 25 4 28 28 F 1.39899 * 109.47095 * 30.17719 * 27 26 25 29 29 F 1.39898 * 109.47236 * 150.18169 * 27 26 25 30 30 H 1.09002 * 109.47152 * 90.02316 * 1 2 3 31 31 H 1.09001 * 109.46980 * 330.02417 * 1 2 3 32 32 H 1.09004 * 109.47113 * 210.02398 * 1 2 3 33 33 H 1.08001 * 127.25056 * 359.97438 * 3 2 1 34 34 H 1.09003 * 109.77256 * 300.17175 * 8 7 5 35 35 H 1.08999 * 109.76564 * 60.92641 * 8 7 5 36 36 H 1.08999 * 109.76128 * 247.20320 * 11 9 8 37 37 H 1.08999 * 109.76010 * 7.91948 * 11 9 8 38 38 H 0.96999 * 120.00561 * 179.97438 * 16 15 13 39 39 H 1.09004 * 110.00742 * 222.33876 * 21 12 11 40 40 H 1.09002 * 110.01199 * 100.97602 * 21 12 11 41 41 H 1.08998 * 110.02583 * 280.76427 * 24 7 5 42 42 H 1.09001 * 110.03190 * 42.19300 * 24 7 5 43 43 H 1.09002 * 109.46893 * 270.17897 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5854 0.0006 5 6 4.8765 1.3812 0.0014 6 8 4.8214 2.5957 0.0020 7 7 6.0731 0.7610 0.0024 8 6 7.3769 1.4328 0.0027 9 6 8.4677 0.3497 -0.0100 10 1 9.3030 0.6051 -0.6619 11 6 8.9011 0.0469 1.4331 12 7 8.8071 -1.4018 1.6402 13 6 9.0959 -2.0551 2.8085 14 1 8.9969 -3.1290 2.8654 15 6 9.5159 -1.3369 3.9197 16 7 9.6370 -0.0282 3.8503 17 14 9.9092 -2.2280 5.5137 18 1 9.6938 -3.6860 5.3318 19 1 11.3256 -1.9787 5.8838 20 1 9.0202 -1.7276 6.5928 21 6 8.3557 -2.0418 0.3993 22 6 7.7223 -0.9361 -0.4643 23 1 7.8089 -1.1286 -1.5336 24 6 6.2757 -0.6927 0.0092 25 7 3.5420 -0.7296 0.0004 26 7 2.3081 -1.0871 0.0057 27 6 1.8376 -2.4744 0.0135 28 9 2.7697 -3.2791 0.6775 29 9 0.6061 -2.5455 0.6734 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 0.8902 0.5135 32 1 -0.3633 -0.8898 0.5142 33 1 2.0057 2.1260 -0.0004 34 1 7.4690 2.0594 -0.8844 35 1 7.4757 2.0453 0.8989 36 1 9.9293 0.3750 1.5856 37 1 8.2423 0.5625 2.1317 38 1 9.9302 0.4737 4.6269 39 1 7.6154 -2.8098 0.6237 40 1 9.2046 -2.4829 -0.1231 41 1 6.1395 -1.0839 1.0174 42 1 5.5746 -1.1706 -0.6751 43 1 1.7210 -2.8243 -1.0122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048843080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:09 Heat of formation + Delta-G solvation = -0.433803 kcal Electronic energy + Delta-G solvation = -30569.004713 eV Core-core repulsion = 26095.562690 eV Total energy + Delta-G solvation = -4473.442023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.84797 -47.92652 -42.87812 -39.94147 -38.02290 -34.89613 -33.32302 -32.91328 -32.16070 -30.30671 -29.35965 -27.63540 -26.91929 -25.41399 -25.36291 -23.71038 -22.08587 -21.42830 -20.03794 -19.28292 -19.04570 -18.72683 -18.23364 -17.68373 -16.92192 -16.41954 -16.19234 -15.75348 -15.27877 -14.77938 -14.65161 -14.58301 -14.38630 -14.21398 -13.84308 -13.67464 -13.48618 -13.27272 -13.04249 -12.90375 -12.74932 -12.55888 -12.17837 -12.00479 -11.91636 -11.46378 -11.37124 -10.94061 -10.85062 -10.76649 -10.37623 -10.03973 -10.02085 -9.89706 -9.76506 -9.62382 -9.57172 -9.20261 -8.57495 -8.24839 -6.79730 -5.69281 -3.02691 1.24803 1.52324 1.88009 2.98608 3.19903 3.41708 3.47057 3.49388 3.49664 3.52267 3.94557 4.19162 4.45942 4.52269 4.67086 4.90049 5.04631 5.12347 5.25286 5.35431 5.36440 5.46490 5.54526 5.66251 5.66828 5.74744 5.79028 5.95795 6.07439 6.16117 6.25605 6.27985 6.36521 6.49895 6.62278 6.65358 6.70283 6.88508 7.51737 7.59890 7.61911 7.79256 7.85271 8.29720 8.34945 9.25145 9.85796 10.49508 11.42305 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.011934 B = 0.003633 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.711339 B = 7706.014297 C = 8824.436643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.024 3.976 3 C -0.170 4.170 4 C 0.019 3.981 5 C 0.611 3.389 6 O -0.539 6.539 7 N -0.591 5.591 8 C 0.121 3.879 9 C -0.123 4.123 10 H 0.091 0.909 11 C 0.185 3.815 12 N -0.602 5.602 13 C -0.228 4.228 14 H 0.079 0.921 15 C -0.007 4.007 16 N -0.920 5.920 17 Si 0.911 3.089 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.291 1.291 21 C 0.146 3.854 22 C -0.113 4.113 23 H 0.089 0.911 24 C 0.118 3.882 25 N -0.238 5.238 26 N -0.353 5.353 27 C 0.505 3.495 28 F -0.162 7.162 29 F -0.174 7.174 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.169 0.831 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.051 0.949 38 H 0.252 0.748 39 H 0.038 0.962 40 H 0.019 0.981 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.634 -2.723 -13.184 22.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.097 4.097 3 C -0.197 4.197 4 C -0.144 4.144 5 C 0.397 3.603 6 O -0.415 6.415 7 N -0.323 5.323 8 C -0.001 4.001 9 C -0.143 4.143 10 H 0.110 0.890 11 C 0.060 3.940 12 N -0.329 5.329 13 C -0.356 4.356 14 H 0.096 0.904 15 C -0.203 4.203 16 N -0.568 5.568 17 Si 0.741 3.259 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.218 1.218 21 C 0.020 3.980 22 C -0.133 4.133 23 H 0.107 0.893 24 C -0.004 4.004 25 N -0.070 5.070 26 N -0.151 5.151 27 C 0.372 3.628 28 F -0.143 7.143 29 F -0.155 7.155 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.186 0.814 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.037 0.963 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -18.072 -3.148 -12.915 22.434 hybrid contribution -0.210 0.124 1.151 1.177 sum -18.282 -3.024 -11.764 21.949 Atomic orbital electron populations 1.20712 0.86046 1.05404 1.03742 1.21444 0.95661 0.85797 1.06749 1.21607 0.90202 0.99694 1.08233 1.22092 0.95377 0.89290 1.07655 1.16388 0.80614 0.85858 0.77452 1.90783 1.86276 1.12516 1.51894 1.48084 1.05155 1.08698 1.70344 1.21886 0.80993 0.95303 1.01920 1.23168 0.96354 0.93344 1.01449 0.89029 1.21112 1.00174 0.85006 0.87708 1.44211 1.78635 1.02380 1.07646 1.19077 1.38189 0.91251 0.87112 0.90356 1.24791 1.01704 0.95722 0.98121 1.69964 1.52982 1.04701 1.29154 0.86061 0.77624 0.78558 0.83615 1.20519 1.21747 1.21830 1.21152 0.95679 0.93447 0.87764 1.22977 0.93951 0.97158 0.99183 0.89326 1.22220 0.96199 0.79438 1.02582 1.73829 0.99372 1.15280 1.18528 1.46737 1.04955 1.06893 1.56491 1.21451 0.72363 0.74967 0.94039 1.93197 1.65894 1.71783 1.83444 1.93046 1.43074 1.95055 1.84333 0.90147 0.89289 0.89452 0.81376 0.91995 0.90584 0.93706 0.93103 0.93792 0.94404 0.96288 0.90246 0.90457 0.82191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 10.00 36.01 0.36 -0.27 16 2 C 0.02 0.26 6.81 -82.21 -0.56 -0.30 16 3 C -0.17 -2.19 10.73 -39.36 -0.42 -2.62 16 4 C 0.02 0.31 6.96 -82.77 -0.58 -0.27 16 5 C 0.61 11.30 7.84 -12.39 -0.10 11.20 16 6 O -0.54 -11.04 17.23 5.30 0.09 -10.95 16 7 N -0.59 -10.80 3.31 -173.33 -0.57 -11.38 16 8 C 0.12 2.18 6.23 -3.57 -0.02 2.16 16 9 C -0.12 -2.27 4.02 -88.60 -0.36 -2.63 16 10 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 11 C 0.18 4.45 4.75 -3.61 -0.02 4.43 16 12 N -0.60 -15.23 3.37 -171.94 -0.58 -15.81 16 13 C -0.23 -6.36 10.25 -15.06 -0.15 -6.51 16 14 H 0.08 2.12 7.83 -52.49 -0.41 1.70 16 15 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 16 N -0.92 -27.25 10.25 55.49 0.57 -26.68 16 17 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 21 C 0.15 2.96 6.37 -3.43 -0.02 2.93 16 22 C -0.11 -1.93 4.19 -88.26 -0.37 -2.30 16 23 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 24 C 0.12 2.07 5.20 -3.29 -0.02 2.06 16 25 N -0.24 -3.52 8.92 33.42 0.30 -3.22 16 26 N -0.35 -4.06 3.68 -62.36 -0.23 -4.29 16 27 C 0.50 4.02 6.49 59.85 0.39 4.41 16 28 F -0.16 -1.80 17.26 2.25 0.04 -1.76 16 29 F -0.17 -1.31 14.35 2.25 0.03 -1.27 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.51 5.48 -51.93 -0.28 0.23 16 33 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.50 7.44 -51.93 -0.39 1.12 16 36 H 0.04 1.20 7.45 -51.93 -0.39 0.81 16 37 H 0.05 1.39 6.51 -51.93 -0.34 1.05 16 38 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.04 0.75 7.95 -51.93 -0.41 0.34 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 1.65 7.72 -51.93 -0.40 1.25 16 42 H 0.08 1.22 6.48 -51.93 -0.34 0.89 16 43 H 0.16 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 354.78 15.07 5.35 5.35 Total: -1.00 -34.73 354.78 -7.46 -42.20 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -5.47 Total: -1.55 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: -1.96 Total: 11.99 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -0.52 Total: -61.38 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.07 Total: -3.04 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.73 -7.46 -42.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048843080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.762 kcal (2) G-P(sol) polarization free energy of solvation -34.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds