Wall clock time and date at job start Sat Apr 11 2020 05:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.46952 * 2 1 4 4 N 1.35641 * 126.43552 * 264.95561 * 3 2 1 5 5 H 0.96999 * 124.93163 * 0.07699 * 4 3 2 6 6 N 1.28473 * 110.13333 * 180.02562 * 4 3 2 7 7 C 1.31825 * 110.13192 * 359.73814 * 6 4 3 8 8 C 1.47667 * 126.46125 * 180.27556 * 7 6 4 9 9 O 1.21574 * 120.00131 * 180.15567 * 8 7 6 10 10 N 1.34780 * 120.00077 * 0.15553 * 8 7 6 11 11 C 1.46500 * 120.00425 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.19991 * 35.64409 * 11 10 8 13 13 C 1.50125 * 109.20870 * 154.99984 * 11 10 8 14 14 C 1.52531 * 105.41682 * 218.02845 * 13 11 10 15 15 C 1.46240 * 114.27523 * 270.59663 * 14 13 11 16 16 N 1.50165 * 107.53278 * 58.40812 * 15 14 13 17 17 C 1.36936 * 120.53691 * 109.60773 * 16 15 14 18 18 H 1.08003 * 120.00041 * 156.71434 * 17 16 15 19 19 C 1.38816 * 120.00118 * 336.71662 * 17 16 15 20 20 N 1.31615 * 119.99583 * 340.41543 * 19 17 16 21 21 Si 1.86804 * 120.00155 * 160.41684 * 19 17 16 22 22 H 1.48501 * 109.46777 * 59.99827 * 21 19 17 23 23 H 1.48496 * 109.47144 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47005 * 300.00155 * 21 19 17 25 25 C 1.43430 * 118.92736 * 289.58450 * 16 15 14 26 26 C 1.54843 * 109.21128 * 276.32838 * 11 10 8 27 27 C 1.35466 * 126.43537 * 85.00141 * 3 2 1 28 28 Cl 1.73599 * 127.23533 * 359.93919 * 27 3 2 29 29 H 1.09001 * 109.47477 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47266 * 300.00037 * 1 2 3 31 31 H 1.09008 * 109.47384 * 59.99851 * 1 2 3 32 32 H 1.09000 * 109.46679 * 240.00370 * 2 1 3 33 33 H 1.09002 * 109.46962 * 120.00004 * 2 1 3 34 34 H 0.97004 * 119.99727 * 0.02562 * 10 8 7 35 35 H 1.08994 * 110.25064 * 337.00619 * 13 11 10 36 36 H 1.09003 * 110.24601 * 99.05504 * 13 11 10 37 37 H 1.08992 * 108.52110 * 31.84247 * 14 13 11 38 38 H 1.08998 * 108.52149 * 149.51273 * 14 13 11 39 39 H 1.08997 * 109.84109 * 177.91219 * 15 14 13 40 40 H 1.08996 * 109.84640 * 298.89879 * 15 14 13 41 41 H 0.97002 * 119.99618 * 180.02562 * 20 19 17 42 42 H 1.08995 * 108.16448 * 213.28794 * 25 16 15 43 43 H 1.09000 * 108.15920 * 330.06282 * 25 16 15 44 44 H 1.09004 * 109.35768 * 320.99398 * 26 11 10 45 45 H 1.08999 * 109.35715 * 80.57541 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3913 2.1484 -1.0870 5 1 2.3632 1.8296 -2.0027 6 7 2.7729 3.3213 -0.7278 7 6 2.6882 3.4446 0.5820 8 6 3.0302 4.6427 1.3745 9 8 2.9094 4.6263 2.5841 10 7 3.4762 5.7546 0.7569 11 6 3.8149 6.9435 1.5431 12 1 4.2541 6.6331 2.4912 13 6 4.8121 7.7700 0.7839 14 6 5.7740 8.3123 1.8361 15 6 5.3723 9.5941 2.4143 16 7 4.0152 9.4073 3.0296 17 6 3.8612 9.4150 4.3902 18 1 2.9020 9.6568 4.8237 19 6 4.9378 9.1120 5.2124 20 7 5.9715 8.4567 4.7282 21 14 4.9196 9.6344 7.0058 22 1 3.7586 9.0116 7.6909 23 1 6.1763 9.1934 7.6626 24 1 4.8091 11.1129 7.0897 25 6 2.8830 9.2213 2.1690 26 6 2.5257 7.7548 1.8212 27 6 2.2109 2.2110 1.0857 28 17 1.9100 1.7997 2.7452 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5722 5.7678 -0.2083 35 1 5.3486 7.1491 0.0666 36 1 4.3099 8.5914 0.2727 37 1 5.8566 7.5806 2.6397 38 1 6.7555 8.4341 1.3780 39 1 6.0874 9.8950 3.1799 40 1 5.3233 10.3531 1.6336 41 1 6.7237 8.2447 5.3029 42 1 2.0156 9.6784 2.6451 43 1 3.0745 9.7516 1.2362 44 1 1.8901 7.7379 0.9358 45 1 1.9893 7.3055 2.6570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052451105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:18 Heat of formation + Delta-G solvation = 54.275521 kcal Electronic energy + Delta-G solvation = -27953.335872 eV Core-core repulsion = 24034.062903 eV Total energy + Delta-G solvation = -3919.272969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.94638 -39.30809 -37.49624 -36.52136 -34.67105 -34.48305 -32.36343 -31.75831 -31.45758 -29.92654 -29.37259 -26.16029 -24.58900 -24.17255 -23.71465 -22.39016 -21.35041 -20.25736 -19.49258 -19.01255 -18.10264 -16.79465 -16.59270 -16.17471 -15.38317 -15.14368 -14.95152 -14.60767 -14.39196 -14.14172 -13.92132 -13.66080 -13.46308 -13.11040 -12.91373 -12.36835 -12.25432 -12.13699 -12.07438 -11.75687 -11.64175 -11.39997 -11.37071 -11.16588 -10.71381 -10.65848 -10.51524 -10.31788 -10.14803 -9.97053 -9.69032 -9.56441 -9.46920 -9.40110 -9.26785 -8.93217 -8.46880 -8.25761 -6.61129 -5.68264 -3.06645 1.38464 1.70619 1.94389 2.74981 3.48736 3.50080 3.53876 3.55464 3.62233 4.17185 4.33135 4.52589 4.61938 4.79877 5.00568 5.06279 5.21371 5.41893 5.44234 5.48583 5.58188 5.66153 5.72329 5.79399 5.86968 5.98705 6.11614 6.36265 6.40046 6.50369 6.56943 6.58838 6.79549 6.96389 6.98374 7.02586 7.12635 7.23107 7.30956 7.47562 7.67404 7.85025 8.00815 8.06491 8.53691 8.63736 9.30079 9.97513 10.49914 11.39589 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016964 B = 0.003003 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.130791 B = 9323.118068 C =10288.296527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.055 4.055 3 C 0.028 3.972 4 N -0.378 5.378 5 H 0.449 0.551 6 N -0.248 5.248 7 C 0.015 3.985 8 C 0.588 3.412 9 O -0.506 6.506 10 N -0.713 5.713 11 C 0.156 3.844 12 H 0.104 0.896 13 C -0.121 4.121 14 C -0.129 4.129 15 C 0.165 3.835 16 N -0.588 5.588 17 C -0.248 4.248 18 H 0.067 0.933 19 C 0.004 3.996 20 N -0.900 5.900 21 Si 0.900 3.100 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.286 1.286 25 C 0.162 3.838 26 C -0.151 4.151 27 C -0.101 4.101 28 Cl -0.004 7.004 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.396 0.604 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.029 0.971 39 H 0.090 0.910 40 H 0.006 0.994 41 H 0.252 0.748 42 H 0.033 0.967 43 H 0.028 0.972 44 H 0.044 0.956 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.332 -16.253 -15.869 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.099 4.099 4 N -0.093 5.093 5 H 0.295 0.705 6 N -0.083 5.083 7 C -0.148 4.148 8 C 0.370 3.630 9 O -0.377 6.377 10 N -0.364 5.364 11 C 0.054 3.946 12 H 0.122 0.878 13 C -0.159 4.159 14 C -0.168 4.168 15 C 0.042 3.958 16 N -0.309 5.309 17 C -0.378 4.378 18 H 0.084 0.916 19 C -0.194 4.194 20 N -0.545 5.545 21 Si 0.730 3.270 22 H -0.210 1.210 23 H -0.218 1.218 24 H -0.213 1.213 25 C 0.033 3.967 26 C -0.194 4.194 27 C -0.138 4.138 28 Cl 0.024 6.976 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.230 0.770 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.048 0.952 39 H 0.109 0.891 40 H 0.024 0.976 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.046 0.954 44 H 0.063 0.937 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.959 -15.679 -15.615 23.196 hybrid contribution -0.202 -0.651 0.663 0.951 sum -7.160 -16.330 -14.951 23.270 Atomic orbital electron populations 1.21775 0.93599 1.02516 1.02880 1.20166 0.96818 0.87975 1.04390 1.21154 1.05507 0.96830 0.86412 1.43166 1.47929 1.08659 1.09520 0.70537 1.73645 1.18016 1.02483 1.14166 1.22204 1.06682 0.96441 0.89494 1.16822 0.78428 0.81181 0.86588 1.90902 1.51938 1.82434 1.12475 1.46371 1.66133 1.13116 1.10753 1.21323 0.95352 0.82469 0.95473 0.87770 1.21360 0.97520 0.98856 0.98140 1.20936 0.95245 1.02788 0.97868 1.20166 0.87772 0.92842 0.95052 1.44260 1.02511 1.82020 1.02134 1.19153 0.97172 1.40075 0.81389 0.91562 1.24874 0.98310 0.98663 0.97601 1.69947 1.08959 1.40349 1.35213 0.86399 0.76809 0.78394 0.85383 1.21039 1.21799 1.21308 1.20347 0.91334 0.91710 0.93337 1.23315 0.96225 1.00077 0.99735 1.20543 1.10619 0.94422 0.88263 1.98372 1.94312 1.92777 1.12108 0.91445 0.91630 0.92589 0.90176 0.88691 0.77037 0.92797 0.91866 0.87847 0.95221 0.89149 0.97626 0.93759 0.94837 0.95380 0.93711 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 37.16 0.37 -0.47 16 2 C -0.05 -0.32 6.36 -27.88 -0.18 -0.50 16 3 C 0.03 0.27 6.51 -81.90 -0.53 -0.27 16 4 N -0.38 -3.24 6.86 33.62 0.23 -3.01 16 5 H 0.45 1.91 8.96 -190.44 -1.71 0.20 16 6 N -0.25 -3.05 11.91 33.42 0.40 -2.65 16 7 C 0.01 0.22 7.13 -82.76 -0.59 -0.37 16 8 C 0.59 10.98 7.77 -12.41 -0.10 10.88 16 9 O -0.51 -11.43 15.54 5.30 0.08 -11.35 16 10 N -0.71 -12.25 4.97 -55.25 -0.27 -12.52 16 11 C 0.16 3.12 2.22 -68.39 -0.15 2.97 16 12 H 0.10 2.63 6.27 -51.93 -0.33 2.30 16 13 C -0.12 -2.20 5.34 -28.40 -0.15 -2.35 16 14 C -0.13 -2.78 5.02 -30.18 -0.15 -2.94 16 15 C 0.17 3.86 5.24 -5.20 -0.03 3.83 16 16 N -0.59 -14.63 2.60 -175.09 -0.46 -15.08 16 17 C -0.25 -6.88 9.63 -15.06 -0.14 -7.02 16 18 H 0.07 1.84 7.89 -52.48 -0.41 1.43 16 19 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 20 N -0.90 -25.49 9.43 55.49 0.52 -24.97 16 21 Si 0.90 22.26 29.60 -169.99 -5.03 17.23 16 22 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.16 3.49 5.18 -4.66 -0.02 3.46 16 26 C -0.15 -3.06 5.98 -24.76 -0.15 -3.21 16 27 C -0.10 -1.38 6.79 -39.31 -0.27 -1.65 16 28 Cl 0.00 -0.06 28.02 -51.86 -1.45 -1.52 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 32 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.40 5.72 8.20 -40.82 -0.33 5.38 16 35 H 0.05 0.87 7.85 -51.93 -0.41 0.46 16 36 H 0.06 1.10 6.28 -51.93 -0.33 0.77 16 37 H 0.10 2.63 5.29 -51.93 -0.27 2.36 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 2.36 6.05 -51.93 -0.31 2.05 16 40 H 0.01 0.12 8.12 -51.93 -0.42 -0.30 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.03 0.72 7.99 -51.93 -0.41 0.31 16 43 H 0.03 0.55 6.88 -51.93 -0.36 0.19 16 44 H 0.04 0.80 8.13 -51.93 -0.42 0.37 16 45 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 371.42 15.07 5.60 5.60 Total: -1.00 -32.61 371.42 -10.38 -42.99 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.81 Total: 2.91 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -2.18 Total: 2.38 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: 0.42 Total: -58.24 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.08 Total: -11.35 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.45 Total: -1.52 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.61 -10.38 -42.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052451105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.262 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds