Wall clock time and date at job start Sat Apr 11 2020 05:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.46952 * 2 1 4 4 N 1.35641 * 126.43552 * 264.95561 * 3 2 1 5 5 H 0.96999 * 124.93163 * 0.07699 * 4 3 2 6 6 N 1.28473 * 110.13333 * 180.02562 * 4 3 2 7 7 C 1.31825 * 110.13192 * 359.73814 * 6 4 3 8 8 C 1.47667 * 126.46125 * 180.27556 * 7 6 4 9 9 O 1.21574 * 120.00131 * 180.15567 * 8 7 6 10 10 N 1.34780 * 120.00077 * 0.15553 * 8 7 6 11 11 C 1.46500 * 120.00425 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.19991 * 35.64409 * 11 10 8 13 13 C 1.50125 * 109.20870 * 154.99984 * 11 10 8 14 14 C 1.52531 * 105.41682 * 218.02845 * 13 11 10 15 15 C 1.46240 * 114.27523 * 270.59663 * 14 13 11 16 16 N 1.50165 * 107.53278 * 58.40812 * 15 14 13 17 17 C 1.36936 * 120.53691 * 109.60773 * 16 15 14 18 18 H 1.08003 * 120.00041 * 156.71434 * 17 16 15 19 19 C 1.38816 * 120.00118 * 336.71662 * 17 16 15 20 20 N 1.31615 * 119.99583 * 340.41543 * 19 17 16 21 21 Si 1.86804 * 120.00155 * 160.41684 * 19 17 16 22 22 H 1.48501 * 109.46777 * 59.99827 * 21 19 17 23 23 H 1.48496 * 109.47144 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47005 * 300.00155 * 21 19 17 25 25 C 1.43430 * 118.92736 * 289.58450 * 16 15 14 26 26 C 1.54843 * 109.21128 * 276.32838 * 11 10 8 27 27 C 1.35466 * 126.43537 * 85.00141 * 3 2 1 28 28 Cl 1.73599 * 127.23533 * 359.93919 * 27 3 2 29 29 H 1.09001 * 109.47477 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47266 * 300.00037 * 1 2 3 31 31 H 1.09008 * 109.47384 * 59.99851 * 1 2 3 32 32 H 1.09000 * 109.46679 * 240.00370 * 2 1 3 33 33 H 1.09002 * 109.46962 * 120.00004 * 2 1 3 34 34 H 0.97004 * 119.99727 * 0.02562 * 10 8 7 35 35 H 1.08994 * 110.25064 * 337.00619 * 13 11 10 36 36 H 1.09003 * 110.24601 * 99.05504 * 13 11 10 37 37 H 1.08992 * 108.52110 * 31.84247 * 14 13 11 38 38 H 1.08998 * 108.52149 * 149.51273 * 14 13 11 39 39 H 1.08997 * 109.84109 * 177.91219 * 15 14 13 40 40 H 1.08996 * 109.84640 * 298.89879 * 15 14 13 41 41 H 0.97002 * 119.99618 * 180.02562 * 20 19 17 42 42 H 1.08995 * 108.16448 * 213.28794 * 25 16 15 43 43 H 1.09000 * 108.15920 * 330.06282 * 25 16 15 44 44 H 1.09004 * 109.35768 * 320.99398 * 26 11 10 45 45 H 1.08999 * 109.35715 * 80.57541 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3913 2.1484 -1.0870 5 1 2.3632 1.8296 -2.0027 6 7 2.7729 3.3213 -0.7278 7 6 2.6882 3.4446 0.5820 8 6 3.0302 4.6427 1.3745 9 8 2.9094 4.6263 2.5841 10 7 3.4762 5.7546 0.7569 11 6 3.8149 6.9435 1.5431 12 1 4.2541 6.6331 2.4912 13 6 4.8121 7.7700 0.7839 14 6 5.7740 8.3123 1.8361 15 6 5.3723 9.5941 2.4143 16 7 4.0152 9.4073 3.0296 17 6 3.8612 9.4150 4.3902 18 1 2.9020 9.6568 4.8237 19 6 4.9378 9.1120 5.2124 20 7 5.9715 8.4567 4.7282 21 14 4.9196 9.6344 7.0058 22 1 3.7586 9.0116 7.6909 23 1 6.1763 9.1934 7.6626 24 1 4.8091 11.1129 7.0897 25 6 2.8830 9.2213 2.1690 26 6 2.5257 7.7548 1.8212 27 6 2.2109 2.2110 1.0857 28 17 1.9100 1.7997 2.7452 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5722 5.7678 -0.2083 35 1 5.3486 7.1491 0.0666 36 1 4.3099 8.5914 0.2727 37 1 5.8566 7.5806 2.6397 38 1 6.7555 8.4341 1.3780 39 1 6.0874 9.8950 3.1799 40 1 5.3233 10.3531 1.6336 41 1 6.7237 8.2447 5.3029 42 1 2.0156 9.6784 2.6451 43 1 3.0745 9.7516 1.2362 44 1 1.8901 7.7379 0.9358 45 1 1.9893 7.3055 2.6570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052451105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:18 Heat of formation + Delta-G solvation = 32.114549 kcal Electronic energy + Delta-G solvation = -27954.296844 eV Core-core repulsion = 24034.062903 eV Total energy + Delta-G solvation = -3920.233941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.88003 -40.84122 -39.18425 -37.56003 -36.23255 -35.29317 -34.02840 -33.29600 -32.94400 -31.50594 -30.30055 -28.00400 -26.02005 -25.52489 -24.77868 -23.95195 -22.21744 -21.93033 -20.92621 -20.72494 -18.96742 -18.52750 -18.04255 -17.20826 -16.92639 -16.85545 -16.09524 -15.94004 -15.68001 -15.46873 -15.32321 -15.09146 -14.93517 -14.57882 -14.04157 -13.90489 -13.51435 -13.45177 -13.20009 -13.13652 -13.08007 -12.91770 -12.64667 -12.37504 -12.29238 -12.14908 -12.01971 -11.92731 -11.75851 -11.68111 -11.54769 -11.18000 -11.10319 -10.97604 -10.55053 -10.41255 -9.93635 -9.85491 -8.61109 -7.79873 -5.19590 0.33873 0.72568 1.02177 1.48013 1.48522 1.55312 1.84899 2.24706 2.26064 2.56596 3.29298 3.33244 3.48934 3.65304 3.77931 4.05047 4.07585 4.19451 4.34624 4.36139 4.40519 4.51386 4.58211 4.66236 4.76572 4.82397 4.90201 4.91490 5.03571 5.08425 5.11663 5.20884 5.31325 5.32047 5.37093 5.43467 5.53072 5.67663 5.69957 5.80831 5.89868 6.22662 6.45073 6.46733 6.71548 7.22515 7.25484 7.96123 8.43949 9.24215 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016964 B = 0.003003 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.130791 B = 9323.118068 C =10288.296527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C 0.058 3.942 4 N -0.348 5.348 5 H 0.472 0.528 6 N -0.240 5.240 7 C -0.018 4.018 8 C 0.584 3.416 9 O -0.558 6.558 10 N -0.700 5.700 11 C 0.169 3.831 12 H 0.045 0.955 13 C -0.106 4.106 14 C -0.123 4.123 15 C 0.167 3.833 16 N -0.602 5.602 17 C -0.262 4.262 18 H 0.057 0.943 19 C -0.043 4.043 20 N -0.915 5.915 21 Si 0.955 3.045 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.278 1.278 25 C 0.158 3.842 26 C -0.140 4.140 27 C -0.133 4.133 28 Cl -0.023 7.023 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.413 0.587 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.034 0.966 41 H 0.246 0.754 42 H 0.028 0.972 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.983 -17.399 -19.529 27.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.070 4.070 4 N -0.067 5.067 5 H 0.323 0.677 6 N -0.077 5.077 7 C -0.179 4.179 8 C 0.368 3.632 9 O -0.433 6.433 10 N -0.352 5.352 11 C 0.066 3.934 12 H 0.063 0.937 13 C -0.143 4.143 14 C -0.162 4.162 15 C 0.044 3.956 16 N -0.324 5.324 17 C -0.392 4.392 18 H 0.075 0.925 19 C -0.239 4.239 20 N -0.560 5.560 21 Si 0.785 3.215 22 H -0.214 1.214 23 H -0.220 1.220 24 H -0.204 1.204 25 C 0.029 3.971 26 C -0.183 4.183 27 C -0.171 4.171 28 Cl 0.005 6.995 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.137 0.863 33 H 0.112 0.888 34 H 0.250 0.750 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -7.618 -16.820 -19.357 26.751 hybrid contribution -0.049 -0.380 1.692 1.735 sum -7.667 -17.200 -17.665 25.819 Atomic orbital electron populations 1.21775 0.93101 1.03650 1.02131 1.20397 0.97045 0.85548 1.06295 1.21593 1.02692 0.97693 0.85058 1.43297 1.45490 1.07342 1.10611 0.67708 1.73554 1.17724 1.03938 1.12458 1.21688 1.09704 0.95902 0.90578 1.17288 0.77376 0.82223 0.86317 1.90870 1.54082 1.83488 1.14908 1.46130 1.65612 1.12112 1.11320 1.20881 0.95300 0.83435 0.93820 0.93718 1.21264 0.96376 0.99366 0.97339 1.20745 0.97163 1.00703 0.97594 1.20130 0.86410 0.94388 0.94672 1.44431 1.03949 1.82341 1.01659 1.19337 0.96850 1.39755 0.83267 0.92485 1.25515 0.98431 0.99153 1.00848 1.70131 1.09087 1.41031 1.35794 0.85531 0.76233 0.78243 0.81534 1.21386 1.22035 1.20392 1.20479 0.90095 0.92508 0.94037 1.23181 0.96515 0.98974 0.99581 1.20771 1.12797 0.95014 0.88495 1.98355 1.94519 1.92782 1.13832 0.89428 0.93906 0.91840 0.86302 0.88770 0.74987 0.89915 0.89655 0.92260 0.93520 0.92503 0.94812 0.94521 0.95396 0.92187 0.90419 0.96221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 71.98 0.71 -0.52 16 2 C -0.05 -0.46 6.36 29.85 0.19 -0.27 16 3 C 0.06 0.95 6.51 41.33 0.27 1.22 16 4 N -0.35 -4.77 6.86 -47.55 -0.33 -5.10 16 5 H 0.47 1.79 8.96 -219.99 -1.97 -0.18 16 6 N -0.24 -5.34 11.91 -48.17 -0.57 -5.91 16 7 C -0.02 -0.54 7.13 42.45 0.30 -0.24 16 8 C 0.58 22.39 7.77 86.73 0.67 23.07 16 9 O -0.56 -26.86 15.54 -3.95 -0.06 -26.93 16 10 N -0.70 -23.80 4.97 -446.99 -2.22 -26.03 16 11 C 0.17 6.82 2.22 44.69 0.10 6.92 16 12 H 0.04 2.39 6.27 -2.39 -0.01 2.37 16 13 C -0.11 -3.64 5.34 29.51 0.16 -3.49 16 14 C -0.12 -5.27 5.02 28.36 0.14 -5.13 16 15 C 0.17 7.80 5.24 83.58 0.44 8.24 16 16 N -0.60 -30.34 2.60 -707.86 -1.84 -32.19 16 17 C -0.26 -14.97 9.63 84.03 0.81 -14.16 16 18 H 0.06 3.29 7.89 -2.91 -0.02 3.27 16 19 C -0.04 -2.50 4.91 84.86 0.42 -2.09 16 20 N -0.91 -54.11 9.43 21.65 0.20 -53.90 16 21 Si 0.96 47.27 29.60 68.60 2.03 49.30 16 22 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 23 H -0.29 -14.54 7.11 99.48 0.71 -13.84 16 24 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 25 C 0.16 6.66 5.18 87.60 0.45 7.12 16 26 C -0.14 -5.70 5.98 31.87 0.19 -5.51 16 27 C -0.13 -3.59 6.79 22.44 0.15 -3.44 16 28 Cl -0.02 -0.70 28.02 -2.72 -0.08 -0.78 16 29 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.04 0.56 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 32 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.41 11.07 8.20 -92.71 -0.76 10.31 16 35 H 0.08 2.39 7.85 -2.39 -0.02 2.38 16 36 H 0.08 2.62 6.28 -2.39 -0.01 2.60 16 37 H 0.06 3.14 5.29 -2.39 -0.01 3.13 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 3.03 6.05 -2.39 -0.01 3.02 16 40 H 0.03 1.38 8.12 -2.39 -0.02 1.36 16 41 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 42 H 0.03 1.20 7.99 -2.39 -0.02 1.18 16 43 H 0.06 2.16 6.88 -2.39 -0.02 2.15 16 44 H 0.08 2.62 8.13 -2.38 -0.02 2.60 16 45 H 0.02 0.91 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -77.37 371.42 0.45 -76.92 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -1.69 Total: 12.88 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 5.01 Total: 11.72 kcal Atomic # 7 Polarization: -118.37 SS G_CDS: -4.76 Total: -123.13 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.06 Total: -26.93 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -77.37 0.45 -76.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052451105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.038 kcal (2) G-P(sol) polarization free energy of solvation -77.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds