Wall clock time and date at job start Sat Apr 11 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.46849 * 2 1 4 4 N 1.34238 * 126.28209 * 265.00415 * 3 2 1 5 5 H 0.96998 * 125.74067 * 0.02771 * 4 3 2 6 6 N 1.39934 * 108.52298 * 180.02562 * 4 3 2 7 7 C 1.30527 * 108.89523 * 359.74826 * 6 4 3 8 8 Cl 1.73599 * 126.00592 * 180.26663 * 7 6 4 9 9 C 1.38071 * 126.28209 * 85.00200 * 3 2 1 10 10 C 1.47381 * 126.42034 * 359.96349 * 9 3 2 11 11 O 1.21603 * 120.00311 * 90.00165 * 10 9 3 12 12 N 1.34783 * 119.99846 * 269.99982 * 10 9 3 13 13 C 1.46501 * 119.99862 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.52370 * 324.92089 * 13 12 10 15 15 C 1.53350 * 109.68152 * 204.74895 * 13 12 10 16 16 C 1.53048 * 109.60469 * 178.74595 * 15 13 12 17 17 C 1.53191 * 109.30948 * 61.37550 * 16 15 13 18 18 H 1.09002 * 109.58734 * 65.15617 * 17 16 15 19 19 C 1.52999 * 109.58500 * 185.57312 * 17 16 15 20 20 N 1.46924 * 108.78080 * 305.36460 * 17 16 15 21 21 C 1.36932 * 120.63220 * 233.59037 * 20 17 16 22 22 H 1.07998 * 120.00257 * 29.06845 * 21 20 17 23 23 C 1.38815 * 120.00022 * 209.06619 * 21 20 17 24 24 N 1.31620 * 120.00010 * 15.04378 * 23 21 20 25 25 Si 1.86798 * 120.00070 * 195.04313 * 23 21 20 26 26 H 1.48503 * 109.47325 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47084 * 120.00070 * 25 23 21 28 28 H 1.48498 * 109.47107 * 240.00011 * 25 23 21 29 29 C 1.46931 * 118.73672 * 53.60411 * 20 17 16 30 30 H 1.08999 * 109.47265 * 299.99821 * 1 2 3 31 31 H 1.09005 * 109.47307 * 60.00080 * 1 2 3 32 32 H 1.09007 * 109.47059 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47265 * 240.00179 * 2 1 3 34 34 H 1.08997 * 109.47385 * 120.00265 * 2 1 3 35 35 H 0.97001 * 119.99945 * 359.97438 * 12 10 9 36 36 H 1.08999 * 109.41429 * 58.71369 * 15 13 12 37 37 H 1.08992 * 109.42526 * 298.78699 * 15 13 12 38 38 H 1.08994 * 109.50106 * 301.42752 * 16 15 13 39 39 H 1.08995 * 109.52529 * 181.34290 * 16 15 13 40 40 H 1.09004 * 109.47399 * 179.28771 * 19 17 16 41 41 H 1.08996 * 109.47328 * 299.29307 * 19 17 16 42 42 H 1.09001 * 109.46880 * 59.29495 * 19 17 16 43 43 H 0.96996 * 120.00153 * 179.97438 * 24 23 21 44 44 H 1.09006 * 109.58030 * 66.18377 * 29 20 17 45 45 H 1.09000 * 109.58321 * 186.46078 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.3858 2.1384 -1.0780 5 1 2.3614 1.8295 -1.9972 6 7 2.7955 3.4070 -0.6528 7 6 2.6922 3.4710 0.6469 8 17 3.0779 4.8453 1.6348 9 6 2.2131 2.2235 1.1088 10 6 1.9508 1.8514 2.5105 11 8 2.8314 1.3478 3.1810 12 7 0.7347 2.0694 3.0493 13 6 0.4741 1.7001 4.4429 14 1 1.0252 0.7923 4.6883 15 6 -1.0269 1.4563 4.6405 16 6 -1.2933 1.0402 6.0890 17 6 -0.8603 2.1702 7.0284 18 1 -1.4887 3.0451 6.8615 19 6 -0.9936 1.7090 8.4811 20 7 0.5411 2.5093 6.7459 21 6 1.4723 2.5201 7.7498 22 1 1.3528 1.8706 8.6043 23 6 2.5701 3.3658 7.6691 24 7 2.5760 4.3556 6.8015 25 14 4.0390 3.0993 8.7919 26 1 3.7852 1.9287 9.6698 27 1 5.2508 2.8494 7.9708 28 1 4.2486 4.3084 9.6283 29 6 0.9243 2.8369 5.3658 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.0323 2.4715 2.5146 36 1 -1.3568 0.6639 3.9686 37 1 -1.5752 2.3719 4.4190 38 1 -0.7257 0.1386 6.3189 39 1 -2.3572 0.8442 6.2220 40 1 -0.6731 2.5099 9.1475 41 1 -2.0338 1.4581 8.6886 42 1 -0.3688 0.8305 8.6422 43 1 3.3430 4.9468 6.7453 44 1 0.4414 3.7662 5.0634 45 1 2.0066 2.9507 5.3043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071566447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:37 Heat of formation + Delta-G solvation = 42.587660 kcal Electronic energy + Delta-G solvation = -28531.966437 eV Core-core repulsion = 24612.186645 eV Total energy + Delta-G solvation = -3919.779792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.65055 -39.09807 -37.42838 -36.73345 -34.42265 -34.26524 -32.75036 -31.68819 -30.58362 -29.82094 -29.37012 -26.02917 -24.99875 -24.27154 -22.51965 -22.09472 -21.92051 -20.42102 -19.64990 -19.08715 -17.91818 -16.43511 -16.35662 -15.77495 -15.37667 -15.17740 -14.94136 -14.74751 -14.10297 -13.84158 -13.79985 -13.68716 -13.32344 -13.15917 -12.91230 -12.66222 -12.32473 -12.14422 -11.91558 -11.82960 -11.61207 -11.46473 -11.39377 -11.07256 -10.82462 -10.70857 -10.66346 -10.45429 -10.33957 -10.19651 -9.90429 -9.77134 -9.53607 -9.38432 -9.37654 -8.83816 -8.45543 -8.34230 -6.53982 -5.66243 -3.10899 1.38070 1.48546 2.13031 2.75409 2.97494 3.47271 3.55098 3.56548 3.70139 4.22342 4.50338 4.60105 4.82096 4.87938 5.12389 5.21074 5.29009 5.39574 5.42638 5.52276 5.55832 5.63050 5.68470 5.72628 5.80802 5.88399 6.02315 6.14776 6.31577 6.35740 6.43396 6.49826 6.56127 6.67366 6.79281 6.80079 7.01411 7.09482 7.14146 7.17842 7.40681 7.85164 7.93099 8.00609 8.57639 8.70789 9.32273 9.96603 10.51569 11.41458 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011658 B = 0.004246 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.191274 B = 6593.144542 C = 8088.614820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.068 4.068 3 C 0.139 3.861 4 N -0.450 5.450 5 H 0.445 0.555 6 N -0.281 5.281 7 C 0.158 3.842 8 Cl 0.033 6.967 9 C -0.258 4.258 10 C 0.592 3.408 11 O -0.520 6.520 12 N -0.709 5.709 13 C 0.117 3.883 14 H 0.082 0.918 15 C -0.115 4.115 16 C -0.126 4.126 17 C 0.165 3.835 18 H 0.024 0.976 19 C -0.136 4.136 20 N -0.583 5.583 21 C -0.253 4.253 22 H 0.070 0.930 23 C 0.007 3.993 24 N -0.898 5.898 25 Si 0.897 3.103 26 H -0.278 1.278 27 H -0.288 1.288 28 H -0.292 1.292 29 C 0.167 3.833 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.392 0.608 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.037 0.963 42 H 0.053 0.947 43 H 0.252 0.748 44 H 0.017 0.983 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.492 -7.301 -16.763 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C 0.007 3.993 4 N -0.159 5.159 5 H 0.291 0.709 6 N -0.106 5.106 7 C -0.034 4.034 8 Cl 0.061 6.939 9 C -0.274 4.274 10 C 0.375 3.625 11 O -0.394 6.394 12 N -0.359 5.359 13 C 0.012 3.988 14 H 0.100 0.900 15 C -0.153 4.153 16 C -0.165 4.165 17 C 0.058 3.942 18 H 0.042 0.958 19 C -0.194 4.194 20 N -0.307 5.307 21 C -0.382 4.382 22 H 0.088 0.912 23 C -0.192 4.192 24 N -0.542 5.542 25 Si 0.728 3.272 26 H -0.203 1.203 27 H -0.215 1.215 28 H -0.219 1.219 29 C 0.040 3.960 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.225 0.775 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.035 0.965 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.345 -6.762 -17.173 19.516 hybrid contribution 0.399 -0.096 0.396 0.570 sum -5.946 -6.858 -16.777 19.075 Atomic orbital electron populations 1.21772 0.93052 1.02928 1.02872 1.20386 0.97210 0.88133 1.04978 1.21397 0.96645 0.95170 0.86115 1.45807 1.51922 1.09399 1.08793 0.70902 1.77148 1.23546 0.98888 1.11049 1.22730 0.99555 0.90676 0.90477 1.98476 1.92282 1.38657 1.64462 1.19980 1.17967 0.94345 0.95069 1.17018 0.82709 0.78482 0.84274 1.90844 1.44053 1.42839 1.61704 1.46039 1.12624 1.63192 1.14004 1.22055 0.95228 1.01818 0.79729 0.89957 1.21724 0.95687 1.00445 0.97491 1.22040 0.99499 1.00393 0.94617 1.20479 0.87473 0.93565 0.92646 0.95825 1.21800 0.98690 1.01677 0.97207 1.44031 1.02339 1.80727 1.03586 1.19161 1.01454 1.16435 1.01167 0.91221 1.25058 1.00136 0.95362 0.98629 1.69999 1.29782 1.16283 1.38105 0.86302 0.83472 0.77362 0.80108 1.20270 1.21498 1.21877 1.21099 1.02264 0.90814 0.81814 0.91471 0.92454 0.91173 0.89787 0.88188 0.77530 0.93164 0.92311 0.92091 0.92773 0.92010 0.94431 0.92820 0.93811 0.96513 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 37.16 0.37 -0.62 16 2 C -0.07 -0.53 6.27 -27.89 -0.17 -0.71 16 3 C 0.14 1.53 6.55 -81.60 -0.53 1.00 16 4 N -0.45 -4.45 7.28 33.86 0.25 -4.21 16 5 H 0.45 2.53 8.96 -182.73 -1.64 0.90 16 6 N -0.28 -3.86 12.64 33.18 0.42 -3.44 16 7 C 0.16 2.47 7.89 -16.91 -0.13 2.34 16 8 Cl 0.03 0.56 29.19 -51.86 -1.51 -0.96 16 9 C -0.26 -3.91 5.88 -105.04 -0.62 -4.53 16 10 C 0.59 10.71 7.23 -12.54 -0.09 10.62 16 11 O -0.52 -11.89 16.77 5.27 0.09 -11.81 16 12 N -0.71 -11.60 5.08 -54.62 -0.28 -11.88 16 13 C 0.12 2.23 2.62 -67.65 -0.18 2.05 16 14 H 0.08 1.78 7.58 -51.93 -0.39 1.38 16 15 C -0.12 -1.80 5.37 -26.53 -0.14 -1.94 16 16 C -0.13 -2.09 5.37 -26.61 -0.14 -2.23 16 17 C 0.16 3.35 3.50 -67.60 -0.24 3.12 16 18 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 19 C -0.14 -2.55 7.94 37.16 0.30 -2.25 16 20 N -0.58 -14.49 2.99 -164.77 -0.49 -14.98 16 21 C -0.25 -6.93 8.60 -15.06 -0.13 -7.06 16 22 H 0.07 1.87 6.21 -52.49 -0.33 1.54 16 23 C 0.01 0.20 4.96 -17.43 -0.09 0.12 16 24 N -0.90 -26.78 11.14 55.49 0.62 -26.17 16 25 Si 0.90 22.64 29.58 -169.99 -5.03 17.61 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 C 0.17 4.04 4.86 -3.71 -0.02 4.02 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 35 H 0.39 5.27 8.59 -40.82 -0.35 4.92 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.25 7.62 -51.93 -0.40 0.86 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 1.02 7.45 -51.93 -0.39 0.63 16 43 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.10 2.79 6.06 -51.93 -0.31 2.47 16 LS Contribution 381.34 15.07 5.75 5.75 Total: -1.00 -34.37 381.34 -10.02 -44.39 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -8.01 Total: 1.76 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -1.82 Total: 3.93 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: 0.51 Total: -60.67 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.61 kcal Atomic # 17 Polarization: 0.56 SS G_CDS: -1.51 Total: -0.96 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.37 -10.02 -44.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071566447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.980 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds