Wall clock time and date at job start Sat Apr 11 2020 05:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.46849 * 2 1 4 4 N 1.34238 * 126.28209 * 265.00415 * 3 2 1 5 5 H 0.96998 * 125.74067 * 0.02771 * 4 3 2 6 6 N 1.39934 * 108.52298 * 180.02562 * 4 3 2 7 7 C 1.30527 * 108.89523 * 359.74826 * 6 4 3 8 8 Cl 1.73599 * 126.00592 * 180.26663 * 7 6 4 9 9 C 1.38071 * 126.28209 * 85.00200 * 3 2 1 10 10 C 1.47381 * 126.42034 * 359.96349 * 9 3 2 11 11 O 1.21603 * 120.00311 * 90.00165 * 10 9 3 12 12 N 1.34783 * 119.99846 * 269.99982 * 10 9 3 13 13 C 1.46501 * 119.99862 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.52370 * 324.92089 * 13 12 10 15 15 C 1.53350 * 109.68152 * 204.74895 * 13 12 10 16 16 C 1.53048 * 109.60469 * 178.74595 * 15 13 12 17 17 C 1.53191 * 109.30948 * 61.37550 * 16 15 13 18 18 H 1.09002 * 109.58734 * 65.15617 * 17 16 15 19 19 C 1.52999 * 109.58500 * 185.57312 * 17 16 15 20 20 N 1.46924 * 108.78080 * 305.36460 * 17 16 15 21 21 C 1.36932 * 120.63220 * 233.59037 * 20 17 16 22 22 H 1.07998 * 120.00257 * 29.06845 * 21 20 17 23 23 C 1.38815 * 120.00022 * 209.06619 * 21 20 17 24 24 N 1.31620 * 120.00010 * 15.04378 * 23 21 20 25 25 Si 1.86798 * 120.00070 * 195.04313 * 23 21 20 26 26 H 1.48503 * 109.47325 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47084 * 120.00070 * 25 23 21 28 28 H 1.48498 * 109.47107 * 240.00011 * 25 23 21 29 29 C 1.46931 * 118.73672 * 53.60411 * 20 17 16 30 30 H 1.08999 * 109.47265 * 299.99821 * 1 2 3 31 31 H 1.09005 * 109.47307 * 60.00080 * 1 2 3 32 32 H 1.09007 * 109.47059 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47265 * 240.00179 * 2 1 3 34 34 H 1.08997 * 109.47385 * 120.00265 * 2 1 3 35 35 H 0.97001 * 119.99945 * 359.97438 * 12 10 9 36 36 H 1.08999 * 109.41429 * 58.71369 * 15 13 12 37 37 H 1.08992 * 109.42526 * 298.78699 * 15 13 12 38 38 H 1.08994 * 109.50106 * 301.42752 * 16 15 13 39 39 H 1.08995 * 109.52529 * 181.34290 * 16 15 13 40 40 H 1.09004 * 109.47399 * 179.28771 * 19 17 16 41 41 H 1.08996 * 109.47328 * 299.29307 * 19 17 16 42 42 H 1.09001 * 109.46880 * 59.29495 * 19 17 16 43 43 H 0.96996 * 120.00153 * 179.97438 * 24 23 21 44 44 H 1.09006 * 109.58030 * 66.18377 * 29 20 17 45 45 H 1.09000 * 109.58321 * 186.46078 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.3858 2.1384 -1.0780 5 1 2.3614 1.8295 -1.9972 6 7 2.7955 3.4070 -0.6528 7 6 2.6922 3.4710 0.6469 8 17 3.0779 4.8453 1.6348 9 6 2.2131 2.2235 1.1088 10 6 1.9508 1.8514 2.5105 11 8 2.8314 1.3478 3.1810 12 7 0.7347 2.0694 3.0493 13 6 0.4741 1.7001 4.4429 14 1 1.0252 0.7923 4.6883 15 6 -1.0269 1.4563 4.6405 16 6 -1.2933 1.0402 6.0890 17 6 -0.8603 2.1702 7.0284 18 1 -1.4887 3.0451 6.8615 19 6 -0.9936 1.7090 8.4811 20 7 0.5411 2.5093 6.7459 21 6 1.4723 2.5201 7.7498 22 1 1.3528 1.8706 8.6043 23 6 2.5701 3.3658 7.6691 24 7 2.5760 4.3556 6.8015 25 14 4.0390 3.0993 8.7919 26 1 3.7852 1.9287 9.6698 27 1 5.2508 2.8494 7.9708 28 1 4.2486 4.3084 9.6283 29 6 0.9243 2.8369 5.3658 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.0323 2.4715 2.5146 36 1 -1.3568 0.6639 3.9686 37 1 -1.5752 2.3719 4.4190 38 1 -0.7257 0.1386 6.3189 39 1 -2.3572 0.8442 6.2220 40 1 -0.6731 2.5099 9.1475 41 1 -2.0338 1.4581 8.6886 42 1 -0.3688 0.8305 8.6422 43 1 3.3430 4.9468 6.7453 44 1 0.4414 3.7662 5.0634 45 1 2.0066 2.9507 5.3043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071566447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:36 Heat of formation + Delta-G solvation = 17.920725 kcal Electronic energy + Delta-G solvation = -28533.036076 eV Core-core repulsion = 24612.186645 eV Total energy + Delta-G solvation = -3920.849431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.70701 -40.60737 -39.06333 -37.96806 -35.92217 -35.16289 -34.60844 -32.89858 -31.93670 -31.63436 -30.43757 -27.71459 -26.76291 -25.13459 -24.05599 -23.48167 -22.96220 -21.96625 -21.16533 -20.53222 -18.97335 -18.29149 -17.64615 -17.37017 -16.70983 -16.45841 -16.25641 -15.84957 -15.72182 -15.38579 -15.10961 -15.00750 -14.88049 -14.39498 -14.31709 -14.04593 -13.74240 -13.47814 -13.12415 -13.04781 -12.91490 -12.74209 -12.67930 -12.52237 -12.35269 -12.23819 -12.21067 -12.06469 -11.93171 -11.78422 -11.62475 -11.40559 -11.09003 -10.93784 -10.59532 -10.50536 -10.03551 -9.93546 -8.57903 -7.80694 -5.26739 0.35944 0.40700 0.95734 1.41129 1.45915 1.53477 1.54132 1.83489 2.35286 2.53919 3.35522 3.40432 3.63783 3.73545 3.87114 3.99271 4.12182 4.15371 4.28785 4.31528 4.43364 4.45365 4.56383 4.67813 4.75832 4.77760 4.86569 4.94198 5.02532 5.04694 5.09376 5.12335 5.23753 5.36012 5.36886 5.40241 5.52615 5.59110 5.67276 5.74613 5.88154 5.94021 6.21484 6.45183 6.63640 7.19897 7.32715 7.95123 8.43757 9.23797 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011658 B = 0.004246 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.191274 B = 6593.144542 C = 8088.614820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 C 0.172 3.828 4 N -0.422 5.422 5 H 0.467 0.533 6 N -0.290 5.290 7 C 0.143 3.857 8 Cl 0.009 6.991 9 C -0.295 4.295 10 C 0.598 3.402 11 O -0.577 6.577 12 N -0.694 5.694 13 C 0.132 3.868 14 H 0.056 0.944 15 C -0.106 4.106 16 C -0.117 4.117 17 C 0.152 3.848 18 H 0.019 0.981 19 C -0.129 4.129 20 N -0.603 5.603 21 C -0.247 4.247 22 H 0.076 0.924 23 C -0.053 4.053 24 N -0.931 5.931 25 Si 0.951 3.049 26 H -0.261 1.261 27 H -0.303 1.303 28 H -0.290 1.290 29 C 0.179 3.821 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.083 0.917 35 H 0.409 0.591 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.036 0.964 41 H 0.078 0.922 42 H 0.046 0.954 43 H 0.242 0.758 44 H -0.006 1.006 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.186 -9.920 -18.735 23.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C 0.038 3.962 4 N -0.133 5.133 5 H 0.318 0.682 6 N -0.116 5.116 7 C -0.049 4.049 8 Cl 0.037 6.963 9 C -0.311 4.311 10 C 0.383 3.617 11 O -0.456 6.456 12 N -0.344 5.344 13 C 0.026 3.974 14 H 0.075 0.925 15 C -0.144 4.144 16 C -0.156 4.156 17 C 0.047 3.953 18 H 0.037 0.963 19 C -0.187 4.187 20 N -0.327 5.327 21 C -0.377 4.377 22 H 0.093 0.907 23 C -0.248 4.248 24 N -0.578 5.578 25 Si 0.781 3.219 26 H -0.185 1.185 27 H -0.230 1.230 28 H -0.217 1.217 29 C 0.052 3.948 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.142 0.858 34 H 0.102 0.898 35 H 0.245 0.755 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.114 0.886 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.051 0.949 44 H 0.012 0.988 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.104 -9.387 -19.190 23.222 hybrid contribution 1.163 0.662 0.928 1.628 sum -7.941 -8.725 -18.263 21.742 Atomic orbital electron populations 1.21785 0.91584 1.04162 1.02880 1.20606 0.98301 0.85660 1.06135 1.21780 0.93813 0.95818 0.84839 1.45803 1.49848 1.07917 1.09773 0.68176 1.77087 1.23793 1.00779 1.09946 1.22691 1.00871 0.90295 0.91032 1.98460 1.92568 1.39978 1.65338 1.19784 1.21402 0.95407 0.94465 1.17396 0.82067 0.76995 0.85202 1.90809 1.45734 1.45531 1.63508 1.45856 1.12910 1.62573 1.13049 1.21602 0.97741 0.98129 0.79897 0.92529 1.21697 0.92278 1.02432 0.97992 1.21941 1.01789 0.98087 0.93805 1.20815 0.84629 0.94896 0.94927 0.96297 1.21733 1.01117 1.00312 0.95512 1.44330 1.04279 1.80795 1.03294 1.19502 1.01730 1.15112 1.01396 0.90670 1.25758 1.02748 0.95819 1.00486 1.70166 1.29891 1.17524 1.40198 0.85427 0.80162 0.77736 0.78598 1.18468 1.23033 1.21715 1.20769 0.98845 0.91985 0.83231 0.93075 0.90859 0.89364 0.85837 0.89835 0.75473 0.89096 0.91210 0.92684 0.88572 0.94495 0.90297 0.93472 0.94865 0.98837 0.93807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.89 71.98 0.71 -0.67 16 2 C -0.07 -0.84 6.27 29.85 0.19 -0.65 16 3 C 0.17 3.41 6.55 42.15 0.28 3.69 16 4 N -0.42 -7.17 7.28 -46.79 -0.34 -7.51 16 5 H 0.47 3.45 8.96 -213.43 -1.91 1.54 16 6 N -0.29 -7.65 12.64 -48.95 -0.62 -8.27 16 7 C 0.14 4.52 7.89 85.66 0.68 5.20 16 8 Cl 0.01 0.31 29.19 -2.72 -0.08 0.23 16 9 C -0.29 -8.90 5.88 -20.13 -0.12 -9.01 16 10 C 0.60 22.30 7.23 86.65 0.63 22.93 16 11 O -0.58 -27.91 16.77 -4.04 -0.07 -27.98 16 12 N -0.69 -22.86 5.08 -444.98 -2.26 -25.12 16 13 C 0.13 5.09 2.62 45.17 0.12 5.20 16 14 H 0.06 2.50 7.58 -2.39 -0.02 2.48 16 15 C -0.11 -3.00 5.37 30.73 0.17 -2.84 16 16 C -0.12 -3.51 5.37 30.67 0.16 -3.34 16 17 C 0.15 6.02 3.50 44.97 0.16 6.18 16 18 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 19 C -0.13 -4.62 7.94 71.98 0.57 -4.05 16 20 N -0.60 -30.66 2.99 -675.22 -2.02 -32.68 16 21 C -0.25 -13.94 8.60 84.04 0.72 -13.22 16 22 H 0.08 4.08 6.21 -2.91 -0.02 4.06 16 23 C -0.05 -3.15 4.96 84.86 0.42 -2.73 16 24 N -0.93 -58.94 11.14 21.65 0.24 -58.70 16 25 Si 0.95 48.42 29.58 68.60 2.03 50.45 16 26 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 27 H -0.30 -15.97 7.11 99.48 0.71 -15.26 16 28 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 29 C 0.18 9.06 4.86 86.36 0.42 9.48 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.12 0.61 8.14 -2.39 -0.02 0.60 16 34 H 0.08 1.42 8.08 -2.39 -0.02 1.40 16 35 H 0.41 10.64 8.59 -92.71 -0.80 9.84 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.04 1.47 7.62 -2.38 -0.02 1.45 16 41 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.05 1.72 7.45 -2.39 -0.02 1.71 16 43 H 0.24 15.13 8.31 -92.71 -0.77 14.36 16 44 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 45 H 0.04 2.69 6.06 -2.39 -0.01 2.68 16 Total: -1.00 -82.51 381.34 0.30 -82.21 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -1.68 Total: 11.20 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: 5.10 Total: 16.16 kcal Atomic # 7 Polarization: -127.28 SS G_CDS: -5.00 Total: -132.28 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.07 Total: -27.98 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.45 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -0.08 Total: 0.23 kcal Total: -82.51 0.30 -82.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071566447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.130 kcal (2) G-P(sol) polarization free energy of solvation -82.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds