Wall clock time and date at job start Sat Apr 11 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47387 * 2 1 4 4 N 1.34235 * 126.28291 * 265.15005 * 3 2 1 5 5 H 0.96997 * 125.73754 * 0.02685 * 4 3 2 6 6 N 1.39929 * 108.52062 * 180.30275 * 4 3 2 7 7 C 1.30528 * 108.89698 * 359.72842 * 6 4 3 8 8 Cl 1.73602 * 126.00320 * 180.02562 * 7 6 4 9 9 C 1.38070 * 126.28117 * 84.99638 * 3 2 1 10 10 C 1.47391 * 126.42102 * 359.96616 * 9 3 2 11 11 O 1.21607 * 119.99796 * 269.70908 * 10 9 3 12 12 N 1.34775 * 120.00031 * 89.71556 * 10 9 3 13 13 C 1.46504 * 120.00040 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.51886 * 35.07423 * 13 12 10 15 15 C 1.53036 * 109.49981 * 155.15834 * 13 12 10 16 16 C 1.53037 * 109.53885 * 181.31398 * 15 13 12 17 17 C 1.53185 * 109.31322 * 298.63362 * 16 15 13 18 18 H 1.08997 * 109.70528 * 294.78072 * 17 16 15 19 19 C 1.53006 * 109.58578 * 174.42079 * 17 16 15 20 20 N 1.46928 * 108.77649 * 54.63382 * 17 16 15 21 21 C 1.36936 * 120.63051 * 126.40682 * 20 17 16 22 22 H 1.07995 * 120.00547 * 329.21150 * 21 20 17 23 23 C 1.38822 * 119.99709 * 149.20539 * 21 20 17 24 24 N 1.31620 * 119.99894 * 346.00001 * 23 21 20 25 25 Si 1.86801 * 119.99668 * 165.99941 * 23 21 20 26 26 H 1.48494 * 109.47391 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46889 * 120.00367 * 25 23 21 28 28 H 1.48491 * 109.47167 * 239.99841 * 25 23 21 29 29 C 1.46923 * 118.74014 * 306.39646 * 20 17 16 30 30 H 1.09002 * 109.46791 * 59.99770 * 1 2 3 31 31 H 1.09000 * 109.47194 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46825 * 300.00239 * 1 2 3 33 33 H 1.09003 * 109.47154 * 239.99382 * 2 1 3 34 34 H 1.09002 * 109.46791 * 120.00230 * 2 1 3 35 35 H 0.97000 * 120.00429 * 359.97438 * 12 10 9 36 36 H 1.09005 * 109.46209 * 301.33585 * 15 13 12 37 37 H 1.09006 * 109.45774 * 61.30496 * 15 13 12 38 38 H 1.09004 * 109.49859 * 178.67879 * 16 15 13 39 39 H 1.09005 * 109.49734 * 58.58947 * 16 15 13 40 40 H 1.09000 * 109.46870 * 300.71092 * 19 17 16 41 41 H 1.08992 * 109.47013 * 60.71399 * 19 17 16 42 42 H 1.08997 * 109.46833 * 180.71199 * 19 17 16 43 43 H 0.96997 * 119.99522 * 179.97438 * 24 23 21 44 44 H 1.08998 * 109.59213 * 173.39425 * 29 20 17 45 45 H 1.09005 * 109.58512 * 293.81945 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3835 2.1392 -1.0782 5 1 2.3568 1.8310 -1.9975 6 7 2.8003 3.4052 -0.6523 7 6 2.7033 3.4670 0.6479 8 17 3.1048 4.8357 1.6374 9 6 2.2132 2.2234 1.1088 10 6 1.9508 1.8514 2.5106 11 8 0.8551 2.0530 2.9982 12 7 2.9250 1.2879 3.2520 13 6 2.6640 0.9176 4.6452 14 1 1.6344 0.5733 4.7438 15 6 3.6194 -0.2022 5.0638 16 6 3.3256 -0.6123 6.5087 17 6 3.5537 0.5883 7.4324 18 1 4.6083 0.8636 7.4238 19 6 3.1295 0.2269 8.8573 20 7 2.7462 1.7168 6.9493 21 6 1.8814 2.3660 7.7894 22 1 1.4042 1.8274 8.5947 23 6 1.6183 3.7167 7.6060 24 7 2.3890 4.4362 6.8183 25 14 0.1703 4.5127 8.4773 26 1 -0.5331 3.4954 9.2992 27 1 0.6608 5.6051 9.3556 28 1 -0.7675 5.0707 7.4702 29 6 2.8844 2.1355 5.5478 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.7989 1.1268 2.8630 36 1 3.4818 -1.0614 4.4073 37 1 4.6479 0.1511 4.9887 38 1 3.9908 -1.4258 6.7984 39 1 2.2899 -0.9423 6.5898 40 1 2.0760 -0.0528 8.8629 41 1 3.7296 -0.6102 9.2138 42 1 3.2806 1.0864 9.5104 43 1 2.2049 5.3799 6.6899 44 1 2.1408 2.8990 5.3195 45 1 3.8848 2.5361 5.3831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071566448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:40 Heat of formation + Delta-G solvation = 41.875727 kcal Electronic energy + Delta-G solvation = -28454.868658 eV Core-core repulsion = 24535.057994 eV Total energy + Delta-G solvation = -3919.810664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65121 -39.10504 -37.43115 -36.73600 -34.37664 -34.27850 -32.74372 -31.68062 -30.60957 -29.83603 -29.32793 -26.00570 -24.99195 -24.27600 -22.50458 -22.09815 -21.92133 -20.39953 -19.66611 -19.08406 -17.92771 -16.41284 -16.36493 -15.75137 -15.37941 -15.19796 -14.89045 -14.78879 -14.06028 -13.82705 -13.77495 -13.67023 -13.31846 -13.17919 -12.88766 -12.65523 -12.33414 -12.11821 -11.91390 -11.81929 -11.54010 -11.44601 -11.37447 -11.06803 -10.82689 -10.71599 -10.67167 -10.45383 -10.34394 -10.19706 -9.90802 -9.77744 -9.53677 -9.38388 -9.37915 -8.83914 -8.46196 -8.34561 -6.51837 -5.66750 -3.13085 1.37818 1.48288 2.12886 2.75208 2.97394 3.46760 3.54595 3.55968 3.70465 4.22963 4.51432 4.59654 4.86102 4.90586 5.14778 5.20875 5.34108 5.40052 5.42595 5.54831 5.57171 5.63025 5.70324 5.72460 5.84302 6.02349 6.02462 6.15098 6.31923 6.35818 6.43891 6.50169 6.56275 6.67594 6.79084 6.80050 7.01226 7.10398 7.14016 7.18418 7.40225 7.83708 7.92944 8.00557 8.58237 8.70644 9.32217 9.95930 10.52007 11.41039 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011552 B = 0.004100 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.261035 B = 6827.364772 C = 7972.560107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.065 4.065 3 C 0.138 3.862 4 N -0.450 5.450 5 H 0.445 0.555 6 N -0.281 5.281 7 C 0.158 3.842 8 Cl 0.033 6.967 9 C -0.258 4.258 10 C 0.592 3.408 11 O -0.519 6.519 12 N -0.710 5.710 13 C 0.117 3.883 14 H 0.082 0.918 15 C -0.116 4.116 16 C -0.126 4.126 17 C 0.165 3.835 18 H 0.024 0.976 19 C -0.136 4.136 20 N -0.583 5.583 21 C -0.253 4.253 22 H 0.069 0.931 23 C 0.009 3.991 24 N -0.897 5.897 25 Si 0.898 3.102 26 H -0.277 1.277 27 H -0.291 1.291 28 H -0.288 1.288 29 C 0.169 3.831 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.392 0.608 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.036 0.964 42 H 0.061 0.939 43 H 0.252 0.748 44 H 0.094 0.906 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.912 -11.004 -15.839 19.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.104 4.104 3 C 0.006 3.994 4 N -0.159 5.159 5 H 0.291 0.709 6 N -0.106 5.106 7 C -0.034 4.034 8 Cl 0.061 6.939 9 C -0.274 4.274 10 C 0.375 3.625 11 O -0.393 6.393 12 N -0.360 5.360 13 C 0.012 3.988 14 H 0.100 0.900 15 C -0.154 4.154 16 C -0.165 4.165 17 C 0.058 3.942 18 H 0.042 0.958 19 C -0.193 4.193 20 N -0.307 5.307 21 C -0.383 4.383 22 H 0.087 0.913 23 C -0.191 4.191 24 N -0.541 5.541 25 Si 0.728 3.272 26 H -0.202 1.202 27 H -0.218 1.218 28 H -0.215 1.215 29 C 0.042 3.958 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.225 0.775 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.112 0.888 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 2.451 -9.888 -16.396 19.303 hybrid contribution -0.360 0.193 0.334 0.527 sum 2.091 -9.695 -16.062 18.877 Atomic orbital electron populations 1.21785 0.92941 1.02790 1.03430 1.20364 0.97505 0.87962 1.04563 1.21416 0.96650 0.95166 0.86163 1.45800 1.51817 1.09506 1.08788 0.70899 1.77147 1.23633 0.98893 1.10962 1.22726 0.99397 0.90790 0.90521 1.98475 1.91763 1.39314 1.64343 1.19981 1.17803 0.94408 0.95165 1.17024 0.84571 0.77531 0.83402 1.90839 1.23716 1.52492 1.72300 1.46060 1.14270 1.62400 1.13270 1.22019 0.99629 0.97892 0.79296 0.89952 1.21676 0.99243 0.97231 0.97238 1.22041 1.01149 0.98767 0.94585 1.20484 0.93944 0.87833 0.91912 0.95813 1.21797 1.00534 0.99948 0.97066 1.44017 1.45907 1.34918 1.05834 1.19140 1.17742 0.90348 1.11071 0.91333 1.25107 0.98530 0.96152 0.99273 1.69998 1.37141 1.06439 1.40530 0.86300 0.82752 0.79224 0.78958 1.20244 1.21845 1.21499 1.21069 1.00246 0.92597 0.81862 0.92578 0.91296 0.90823 0.89872 0.88451 0.77478 0.93156 0.92282 0.92775 0.92090 0.92847 0.94451 0.91997 0.93805 0.88782 0.96450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.89 37.16 0.37 -0.93 16 2 C -0.06 -0.51 6.27 -27.88 -0.17 -0.68 16 3 C 0.14 1.52 6.55 -81.60 -0.53 0.99 16 4 N -0.45 -4.45 7.28 33.86 0.25 -4.20 16 5 H 0.45 2.54 8.96 -182.73 -1.64 0.90 16 6 N -0.28 -3.85 12.64 33.17 0.42 -3.43 16 7 C 0.16 2.47 7.89 -16.91 -0.13 2.34 16 8 Cl 0.03 0.55 29.19 -51.86 -1.51 -0.96 16 9 C -0.26 -3.89 5.88 -105.04 -0.62 -4.51 16 10 C 0.59 10.65 7.23 -12.54 -0.09 10.56 16 11 O -0.52 -11.73 16.77 5.27 0.09 -11.64 16 12 N -0.71 -11.66 5.08 -54.77 -0.28 -11.94 16 13 C 0.12 2.23 2.60 -67.81 -0.18 2.05 16 14 H 0.08 1.77 7.58 -51.93 -0.39 1.38 16 15 C -0.12 -1.82 5.35 -26.69 -0.14 -1.96 16 16 C -0.13 -2.09 5.37 -26.62 -0.14 -2.24 16 17 C 0.16 3.36 3.50 -67.60 -0.24 3.12 16 18 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 19 C -0.14 -2.55 7.96 37.16 0.30 -2.25 16 20 N -0.58 -14.50 2.98 -164.78 -0.49 -14.99 16 21 C -0.25 -6.95 8.54 -15.06 -0.13 -7.08 16 22 H 0.07 1.84 6.27 -52.49 -0.33 1.51 16 23 C 0.01 0.25 4.97 -17.43 -0.09 0.16 16 24 N -0.90 -26.75 11.21 55.49 0.62 -26.13 16 25 Si 0.90 22.59 29.58 -169.99 -5.03 17.56 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 C 0.17 4.09 4.84 -3.71 -0.02 4.08 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 35 H 0.39 5.29 8.59 -40.82 -0.35 4.94 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 1.02 7.44 -51.93 -0.39 0.63 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 1.26 7.63 -51.93 -0.40 0.86 16 43 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.09 2.70 6.17 -51.93 -0.32 2.38 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -34.21 381.49 -10.02 -44.24 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -8.02 Total: 2.10 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -1.82 Total: 3.65 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.52 Total: -60.70 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.56 kcal Atomic # 17 Polarization: 0.55 SS G_CDS: -1.51 Total: -0.96 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.21 -10.02 -44.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071566448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.114 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds