Wall clock time and date at job start Sat Apr 11 2020 05:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47387 * 2 1 4 4 N 1.34235 * 126.28291 * 265.15005 * 3 2 1 5 5 H 0.96997 * 125.73754 * 0.02685 * 4 3 2 6 6 N 1.39929 * 108.52062 * 180.30275 * 4 3 2 7 7 C 1.30528 * 108.89698 * 359.72842 * 6 4 3 8 8 Cl 1.73602 * 126.00320 * 180.02562 * 7 6 4 9 9 C 1.38070 * 126.28117 * 84.99638 * 3 2 1 10 10 C 1.47391 * 126.42102 * 359.96616 * 9 3 2 11 11 O 1.21607 * 119.99796 * 269.70908 * 10 9 3 12 12 N 1.34775 * 120.00031 * 89.71556 * 10 9 3 13 13 C 1.46504 * 120.00040 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.51886 * 35.07423 * 13 12 10 15 15 C 1.53036 * 109.49981 * 155.15834 * 13 12 10 16 16 C 1.53037 * 109.53885 * 181.31398 * 15 13 12 17 17 C 1.53185 * 109.31322 * 298.63362 * 16 15 13 18 18 H 1.08997 * 109.70528 * 294.78072 * 17 16 15 19 19 C 1.53006 * 109.58578 * 174.42079 * 17 16 15 20 20 N 1.46928 * 108.77649 * 54.63382 * 17 16 15 21 21 C 1.36936 * 120.63051 * 126.40682 * 20 17 16 22 22 H 1.07995 * 120.00547 * 329.21150 * 21 20 17 23 23 C 1.38822 * 119.99709 * 149.20539 * 21 20 17 24 24 N 1.31620 * 119.99894 * 346.00001 * 23 21 20 25 25 Si 1.86801 * 119.99668 * 165.99941 * 23 21 20 26 26 H 1.48494 * 109.47391 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46889 * 120.00367 * 25 23 21 28 28 H 1.48491 * 109.47167 * 239.99841 * 25 23 21 29 29 C 1.46923 * 118.74014 * 306.39646 * 20 17 16 30 30 H 1.09002 * 109.46791 * 59.99770 * 1 2 3 31 31 H 1.09000 * 109.47194 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46825 * 300.00239 * 1 2 3 33 33 H 1.09003 * 109.47154 * 239.99382 * 2 1 3 34 34 H 1.09002 * 109.46791 * 120.00230 * 2 1 3 35 35 H 0.97000 * 120.00429 * 359.97438 * 12 10 9 36 36 H 1.09005 * 109.46209 * 301.33585 * 15 13 12 37 37 H 1.09006 * 109.45774 * 61.30496 * 15 13 12 38 38 H 1.09004 * 109.49859 * 178.67879 * 16 15 13 39 39 H 1.09005 * 109.49734 * 58.58947 * 16 15 13 40 40 H 1.09000 * 109.46870 * 300.71092 * 19 17 16 41 41 H 1.08992 * 109.47013 * 60.71399 * 19 17 16 42 42 H 1.08997 * 109.46833 * 180.71199 * 19 17 16 43 43 H 0.96997 * 119.99522 * 179.97438 * 24 23 21 44 44 H 1.08998 * 109.59213 * 173.39425 * 29 20 17 45 45 H 1.09005 * 109.58512 * 293.81945 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3835 2.1392 -1.0782 5 1 2.3568 1.8310 -1.9975 6 7 2.8003 3.4052 -0.6523 7 6 2.7033 3.4670 0.6479 8 17 3.1048 4.8357 1.6374 9 6 2.2132 2.2234 1.1088 10 6 1.9508 1.8514 2.5106 11 8 0.8551 2.0530 2.9982 12 7 2.9250 1.2879 3.2520 13 6 2.6640 0.9176 4.6452 14 1 1.6344 0.5733 4.7438 15 6 3.6194 -0.2022 5.0638 16 6 3.3256 -0.6123 6.5087 17 6 3.5537 0.5883 7.4324 18 1 4.6083 0.8636 7.4238 19 6 3.1295 0.2269 8.8573 20 7 2.7462 1.7168 6.9493 21 6 1.8814 2.3660 7.7894 22 1 1.4042 1.8274 8.5947 23 6 1.6183 3.7167 7.6060 24 7 2.3890 4.4362 6.8183 25 14 0.1703 4.5127 8.4773 26 1 -0.5331 3.4954 9.2992 27 1 0.6608 5.6051 9.3556 28 1 -0.7675 5.0707 7.4702 29 6 2.8844 2.1355 5.5478 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.7989 1.1268 2.8630 36 1 3.4818 -1.0614 4.4073 37 1 4.6479 0.1511 4.9887 38 1 3.9908 -1.4258 6.7984 39 1 2.2899 -0.9423 6.5898 40 1 2.0760 -0.0528 8.8629 41 1 3.7296 -0.6102 9.2138 42 1 3.2806 1.0864 9.5104 43 1 2.2049 5.3799 6.6899 44 1 2.1408 2.8990 5.3195 45 1 3.8848 2.5361 5.3831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071566448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:39 Heat of formation + Delta-G solvation = 17.256857 kcal Electronic energy + Delta-G solvation = -28455.936212 eV Core-core repulsion = 24535.057994 eV Total energy + Delta-G solvation = -3920.878218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.70366 -40.61003 -39.06162 -37.96768 -35.92256 -35.16693 -34.60328 -32.89083 -31.95780 -31.66180 -30.43057 -27.70414 -26.75583 -25.19424 -24.05788 -23.48175 -22.96528 -21.94385 -21.17873 -20.52641 -18.98893 -18.29238 -17.62186 -17.36018 -16.74053 -16.44899 -16.18783 -15.92151 -15.74276 -15.37413 -15.10638 -14.97170 -14.87275 -14.43260 -14.34675 -14.05825 -13.75234 -13.46908 -13.14799 -13.04338 -12.92468 -12.74342 -12.68149 -12.52528 -12.37790 -12.25262 -12.21424 -12.08432 -11.95079 -11.78225 -11.62370 -11.40277 -11.09136 -10.92931 -10.59452 -10.51707 -10.03420 -9.93400 -8.56003 -7.81141 -5.29071 0.35952 0.40686 0.95959 1.40967 1.45552 1.53299 1.54778 1.83915 2.35840 2.53572 3.35375 3.40790 3.64100 3.73793 3.88216 3.99873 4.12291 4.15420 4.25687 4.31432 4.40439 4.44626 4.54964 4.67683 4.75921 4.77007 4.86584 4.94404 4.96400 5.04835 5.05256 5.12298 5.23803 5.33357 5.36020 5.39832 5.52593 5.59385 5.66430 5.74695 5.86814 5.94351 6.21855 6.45697 6.64404 7.20010 7.33456 7.94435 8.44064 9.23370 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011552 B = 0.004100 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.261035 B = 6827.364772 C = 7972.560107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.064 4.064 3 C 0.171 3.829 4 N -0.422 5.422 5 H 0.468 0.532 6 N -0.290 5.290 7 C 0.142 3.858 8 Cl 0.008 6.992 9 C -0.294 4.294 10 C 0.598 3.402 11 O -0.574 6.574 12 N -0.696 5.696 13 C 0.132 3.868 14 H 0.057 0.943 15 C -0.107 4.107 16 C -0.117 4.117 17 C 0.152 3.848 18 H 0.019 0.981 19 C -0.129 4.129 20 N -0.603 5.603 21 C -0.248 4.248 22 H 0.074 0.926 23 C -0.051 4.051 24 N -0.931 5.931 25 Si 0.952 3.048 26 H -0.261 1.261 27 H -0.290 1.290 28 H -0.302 1.302 29 C 0.181 3.819 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.030 0.970 33 H 0.132 0.868 34 H 0.098 0.902 35 H 0.410 0.590 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.078 0.922 42 H 0.036 0.964 43 H 0.243 0.757 44 H 0.040 0.960 45 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.689 -14.927 -17.596 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.102 4.102 3 C 0.036 3.964 4 N -0.133 5.133 5 H 0.318 0.682 6 N -0.116 5.116 7 C -0.049 4.049 8 Cl 0.036 6.964 9 C -0.310 4.310 10 C 0.382 3.618 11 O -0.453 6.453 12 N -0.347 5.347 13 C 0.026 3.974 14 H 0.075 0.925 15 C -0.145 4.145 16 C -0.156 4.156 17 C 0.047 3.953 18 H 0.037 0.963 19 C -0.186 4.186 20 N -0.327 5.327 21 C -0.379 4.379 22 H 0.092 0.908 23 C -0.247 4.247 24 N -0.577 5.577 25 Si 0.781 3.219 26 H -0.185 1.185 27 H -0.217 1.217 28 H -0.230 1.230 29 C 0.054 3.946 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.049 0.951 33 H 0.150 0.850 34 H 0.116 0.884 35 H 0.246 0.754 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.059 0.941 45 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 3.278 -13.857 -18.188 23.099 hybrid contribution -0.583 1.322 0.810 1.657 sum 2.696 -12.534 -17.378 21.596 Atomic orbital electron populations 1.21769 0.93389 1.03806 1.01850 1.20603 0.96850 0.85767 1.07016 1.21799 0.93741 0.95985 0.84844 1.45801 1.49764 1.07981 1.09771 0.68160 1.77085 1.23945 1.00756 1.09842 1.22689 1.00793 0.90363 0.91079 1.98459 1.92038 1.40672 1.65222 1.19794 1.21143 0.95466 0.94573 1.17403 0.83710 0.76134 0.84507 1.90807 1.26084 1.54611 1.73779 1.45885 1.14955 1.61699 1.12134 1.21560 0.99521 0.96646 0.79639 0.92496 1.21652 0.98409 0.96924 0.97481 1.21941 1.01894 0.97790 0.93991 1.20817 0.92841 0.87692 0.93915 0.96330 1.21729 1.00898 1.00396 0.95619 1.44316 1.46529 1.35902 1.05961 1.19474 1.17381 0.90350 1.10649 0.90829 1.25811 1.01006 0.97077 1.00782 1.70163 1.38901 1.06004 1.42668 0.85421 0.80035 0.78640 0.77791 1.18464 1.21653 1.22987 1.20732 0.96957 0.93677 0.83207 0.91503 0.89021 0.95065 0.84992 0.88391 0.75381 0.89053 0.91183 0.88585 0.92669 0.93488 0.90317 0.94515 0.94834 0.94136 0.98792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.89 71.98 0.71 -1.49 16 2 C -0.06 -0.76 6.27 29.85 0.19 -0.57 16 3 C 0.17 3.35 6.55 42.15 0.28 3.63 16 4 N -0.42 -7.09 7.28 -46.79 -0.34 -7.43 16 5 H 0.47 3.36 8.96 -213.43 -1.91 1.45 16 6 N -0.29 -7.63 12.64 -48.96 -0.62 -8.25 16 7 C 0.14 4.50 7.89 85.66 0.68 5.17 16 8 Cl 0.01 0.29 29.19 -2.72 -0.08 0.21 16 9 C -0.29 -8.82 5.88 -20.13 -0.12 -8.94 16 10 C 0.60 22.15 7.23 86.65 0.63 22.78 16 11 O -0.57 -27.55 16.77 -4.05 -0.07 -27.62 16 12 N -0.70 -22.92 5.08 -445.46 -2.26 -25.18 16 13 C 0.13 5.09 2.60 45.07 0.12 5.20 16 14 H 0.06 2.51 7.58 -2.39 -0.02 2.49 16 15 C -0.11 -3.03 5.35 30.62 0.16 -2.86 16 16 C -0.12 -3.51 5.37 30.67 0.16 -3.35 16 17 C 0.15 6.04 3.50 44.97 0.16 6.20 16 18 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 19 C -0.13 -4.63 7.96 71.98 0.57 -4.06 16 20 N -0.60 -30.71 2.98 -675.23 -2.01 -32.73 16 21 C -0.25 -14.02 8.54 84.04 0.72 -13.30 16 22 H 0.07 4.01 6.27 -2.91 -0.02 3.99 16 23 C -0.05 -3.06 4.97 84.86 0.42 -2.64 16 24 N -0.93 -58.92 11.21 21.65 0.24 -58.67 16 25 Si 0.95 48.37 29.58 68.60 2.03 50.40 16 26 H -0.26 -12.35 7.11 99.48 0.71 -11.65 16 27 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 28 H -0.30 -15.90 7.11 99.48 0.71 -15.19 16 29 C 0.18 9.20 4.84 86.36 0.42 9.61 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.13 0.39 8.14 -2.39 -0.02 0.38 16 34 H 0.10 1.26 8.08 -2.39 -0.02 1.24 16 35 H 0.41 10.57 8.59 -92.71 -0.80 9.77 16 36 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 40 H 0.05 1.72 7.44 -2.39 -0.02 1.71 16 41 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.04 1.47 7.63 -2.39 -0.02 1.45 16 43 H 0.24 15.13 8.31 -92.71 -0.77 14.36 16 44 H 0.04 2.49 6.17 -2.39 -0.01 2.48 16 45 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 Total: -1.00 -82.82 381.49 0.30 -82.51 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -1.68 Total: 11.37 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 5.09 Total: 15.39 kcal Atomic # 7 Polarization: -127.28 SS G_CDS: -4.99 Total: -132.27 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.07 Total: -27.62 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.03 Total: 50.40 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -0.08 Total: 0.21 kcal Total: -82.82 0.30 -82.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071566448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.772 kcal (2) G-P(sol) polarization free energy of solvation -82.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds