Wall clock time and date at job start Sat Apr 11 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47421 * 2 1 4 4 N 1.34231 * 126.28344 * 265.17268 * 3 2 1 5 5 H 0.97001 * 125.74158 * 359.95426 * 4 3 2 6 6 N 1.39936 * 108.52280 * 180.22644 * 4 3 2 7 7 C 1.30529 * 108.89260 * 359.76381 * 6 4 3 8 8 Cl 1.73602 * 126.00375 * 180.02562 * 7 6 4 9 9 C 1.38068 * 126.27800 * 84.99669 * 3 2 1 10 10 C 1.47390 * 126.42236 * 0.04409 * 9 3 2 11 11 O 1.21609 * 119.99497 * 269.70577 * 10 9 3 12 12 N 1.34777 * 120.00051 * 89.71334 * 10 9 3 13 13 C 1.46494 * 119.99770 * 180.02562 * 12 10 9 14 14 H 1.09005 * 109.52344 * 325.06965 * 13 12 10 15 15 C 1.53043 * 109.49793 * 204.99804 * 13 12 10 16 16 C 1.53048 * 109.53423 * 301.41370 * 15 13 12 17 17 C 1.53188 * 109.30884 * 298.63146 * 16 15 13 18 18 H 1.09004 * 109.58948 * 294.84591 * 17 16 15 19 19 C 1.53003 * 109.58537 * 174.56384 * 17 16 15 20 20 N 1.46921 * 108.89665 * 54.70995 * 17 16 15 21 21 C 1.36938 * 120.63798 * 126.32015 * 20 17 16 22 22 H 1.08004 * 119.99594 * 328.76496 * 21 20 17 23 23 C 1.38810 * 120.00746 * 148.75811 * 21 20 17 24 24 N 1.31624 * 119.99291 * 349.66676 * 23 21 20 25 25 Si 1.86796 * 120.00435 * 169.66308 * 23 21 20 26 26 H 1.48503 * 109.46740 * 60.00215 * 25 23 21 27 27 H 1.48497 * 109.46946 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.46995 * 300.00326 * 25 23 21 29 29 C 1.47208 * 118.55416 * 306.46104 * 20 17 16 30 30 H 1.09000 * 109.47028 * 60.00275 * 1 2 3 31 31 H 1.08997 * 109.47093 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47087 * 299.99612 * 1 2 3 33 33 H 1.09007 * 109.47246 * 240.00144 * 2 1 3 34 34 H 1.09002 * 109.47304 * 120.00183 * 2 1 3 35 35 H 0.96998 * 119.99954 * 359.97438 * 12 10 9 36 36 H 1.08995 * 109.46298 * 181.39414 * 15 13 12 37 37 H 1.09006 * 109.46053 * 61.42917 * 15 13 12 38 38 H 1.08997 * 109.49387 * 178.68489 * 16 15 13 39 39 H 1.08996 * 109.49513 * 58.58476 * 16 15 13 40 40 H 1.09009 * 109.46509 * 60.28433 * 19 17 16 41 41 H 1.08999 * 109.47350 * 180.27783 * 19 17 16 42 42 H 1.08993 * 109.47293 * 300.28570 * 19 17 16 43 43 H 0.97004 * 119.99680 * 180.02562 * 24 23 21 44 44 H 1.09004 * 109.55669 * 293.69589 * 29 20 17 45 45 H 1.08999 * 109.65327 * 173.39658 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3831 2.1393 -1.0782 5 1 2.3571 1.8310 -1.9975 6 7 2.7984 3.4060 -0.6524 7 6 2.7016 3.4676 0.6478 8 17 3.1016 4.8369 1.6372 9 6 2.2132 2.2234 1.1088 10 6 1.9523 1.8508 2.5107 11 8 0.8568 2.0512 2.9992 12 7 2.9277 1.2881 3.2513 13 6 2.6681 0.9173 4.6445 14 1 1.9887 1.6417 5.0938 15 6 3.9856 0.9019 5.4230 16 6 4.9524 -0.0909 4.7734 17 6 4.3447 -1.4962 4.8235 18 1 4.2564 -1.8195 5.8608 19 6 5.2417 -2.4705 4.0573 20 7 3.0132 -1.4613 4.2035 21 6 2.6923 -2.3247 3.1902 22 1 3.4572 -2.6638 2.5072 23 6 1.3842 -2.7645 3.0410 24 7 0.4966 -2.5202 3.9817 25 14 0.8836 -3.7027 1.5053 26 1 1.6934 -4.9428 1.3969 27 1 -0.5561 -4.0569 1.5890 28 1 1.1154 -2.8539 0.3091 29 6 2.0346 -0.4766 4.6932 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.8014 1.1281 2.8615 36 1 3.7951 0.6019 6.4534 37 1 4.4264 1.8988 5.4108 38 1 5.8986 -0.0843 5.3143 39 1 5.1239 0.1945 3.7355 40 1 6.2305 -2.4912 4.5158 41 1 4.8052 -3.4688 4.0899 42 1 5.3287 -2.1457 3.0205 43 1 -0.4175 -2.8278 3.8776 44 1 1.7579 -0.7167 5.7198 45 1 1.1467 -0.4967 4.0613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071566449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:42 Heat of formation + Delta-G solvation = 42.841334 kcal Electronic energy + Delta-G solvation = -29665.756006 eV Core-core repulsion = 25745.987214 eV Total energy + Delta-G solvation = -3919.768792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.47739 -39.12856 -37.34056 -36.82669 -34.06245 -33.94689 -32.70397 -31.55712 -30.51664 -29.86908 -29.11388 -26.19604 -24.99950 -24.02522 -22.43628 -22.09184 -21.81053 -20.45531 -19.59654 -18.68037 -17.79514 -16.45704 -16.15563 -15.57245 -15.28516 -15.09681 -14.89746 -14.29826 -14.11176 -13.94961 -13.68470 -13.37848 -13.23325 -13.06744 -12.75120 -12.56374 -12.46308 -12.01600 -11.83387 -11.78139 -11.22316 -11.18688 -11.15101 -11.04206 -10.94538 -10.86704 -10.68617 -10.58513 -10.40864 -10.33296 -9.96137 -9.56895 -9.45310 -9.44774 -9.33245 -8.64558 -8.47569 -8.27411 -6.55829 -5.75495 -3.22864 1.45429 1.58561 2.26412 2.90018 3.15520 3.27613 3.36343 3.39686 3.95530 4.44622 4.58371 4.87899 5.14147 5.32998 5.35060 5.37919 5.42723 5.50712 5.54609 5.60402 5.63345 5.75607 5.98557 6.05473 6.11575 6.16176 6.19599 6.33155 6.36052 6.37993 6.47679 6.48592 6.57980 6.64482 6.74819 6.95597 6.98500 7.06165 7.15863 7.28983 7.44726 7.74250 7.81490 8.20490 8.50051 8.89165 9.23124 9.86371 10.45793 11.31951 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010407 B = 0.005888 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.961601 B = 4754.168217 C = 6297.044981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 C 0.157 3.843 4 N -0.451 5.451 5 H 0.445 0.555 6 N -0.286 5.286 7 C 0.158 3.842 8 Cl 0.014 6.986 9 C -0.262 4.262 10 C 0.597 3.403 11 O -0.535 6.535 12 N -0.689 5.689 13 C 0.118 3.882 14 H 0.076 0.924 15 C -0.118 4.118 16 C -0.130 4.130 17 C 0.165 3.835 18 H 0.024 0.976 19 C -0.135 4.135 20 N -0.582 5.582 21 C -0.248 4.248 22 H 0.065 0.935 23 C 0.010 3.990 24 N -0.898 5.898 25 Si 0.887 3.113 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.277 1.277 29 C 0.162 3.838 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.395 0.605 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.036 0.964 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.254 0.746 44 H 0.024 0.976 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.722 7.779 -6.107 11.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C 0.025 3.975 4 N -0.160 5.160 5 H 0.291 0.709 6 N -0.111 5.111 7 C -0.035 4.035 8 Cl 0.041 6.959 9 C -0.278 4.278 10 C 0.380 3.620 11 O -0.412 6.412 12 N -0.339 5.339 13 C 0.012 3.988 14 H 0.094 0.906 15 C -0.157 4.157 16 C -0.170 4.170 17 C 0.059 3.941 18 H 0.042 0.958 19 C -0.192 4.192 20 N -0.305 5.305 21 C -0.378 4.378 22 H 0.082 0.918 23 C -0.190 4.190 24 N -0.541 5.541 25 Si 0.717 3.283 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.203 1.203 29 C 0.036 3.964 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.138 0.862 35 H 0.230 0.770 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.042 0.958 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.110 8.629 -6.651 12.491 hybrid contribution -0.059 -1.021 -0.739 1.262 sum 6.051 7.607 -7.390 12.211 Atomic orbital electron populations 1.21717 0.93138 1.02881 1.02497 1.20565 0.97497 0.87292 1.05965 1.21636 0.94840 0.95202 0.85783 1.45820 1.51928 1.09272 1.08961 0.70873 1.77052 1.23907 0.99347 1.10814 1.22502 1.00356 0.90032 0.90568 1.98398 1.92112 1.40105 1.65257 1.19916 1.18370 0.94061 0.95425 1.16930 0.84347 0.77271 0.83447 1.90767 1.23305 1.54882 1.72257 1.45813 1.14443 1.60647 1.12968 1.21810 0.96601 1.00242 0.80136 0.90614 1.21688 0.95796 0.98568 0.99607 1.22060 0.97353 0.97782 0.99760 1.20459 0.87089 0.91471 0.95119 0.95824 1.21789 0.97042 1.00520 0.99879 1.44047 1.08853 1.37501 1.40134 1.18992 0.93614 1.20706 1.04460 0.91751 1.25102 0.97858 0.98745 0.97257 1.69927 1.03435 1.48863 1.31907 0.86672 0.77596 0.80304 0.83742 1.21270 1.21731 1.20337 1.21249 0.93473 0.83155 0.98559 0.93284 0.91399 0.90899 0.90304 0.86240 0.77046 0.91178 0.93017 0.92988 0.92710 0.94548 0.92114 0.93058 0.93579 0.95765 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.89 37.16 0.37 -1.85 16 2 C -0.07 -1.11 6.26 -27.88 -0.17 -1.29 16 3 C 0.16 2.33 6.55 -81.61 -0.53 1.79 16 4 N -0.45 -5.61 7.28 33.86 0.25 -5.37 16 5 H 0.45 3.81 8.96 -182.72 -1.64 2.18 16 6 N -0.29 -4.20 12.64 33.18 0.42 -3.78 16 7 C 0.16 2.49 7.89 -16.91 -0.13 2.35 16 8 Cl 0.01 0.19 29.19 -51.86 -1.51 -1.32 16 9 C -0.26 -4.43 5.88 -105.04 -0.62 -5.04 16 10 C 0.60 11.43 7.23 -12.53 -0.09 11.34 16 11 O -0.54 -12.16 16.77 5.27 0.09 -12.07 16 12 N -0.69 -12.23 4.91 -54.78 -0.27 -12.49 16 13 C 0.12 2.18 2.81 -67.82 -0.19 1.99 16 14 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 15 C -0.12 -1.83 5.59 -26.68 -0.15 -1.98 16 16 C -0.13 -2.01 5.21 -26.61 -0.14 -2.15 16 17 C 0.17 3.10 3.49 -67.60 -0.24 2.87 16 18 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 19 C -0.13 -2.33 7.96 37.16 0.30 -2.03 16 20 N -0.58 -12.91 2.92 -164.55 -0.48 -13.39 16 21 C -0.25 -5.99 8.56 -15.06 -0.13 -6.12 16 22 H 0.06 1.53 6.26 -52.48 -0.33 1.20 16 23 C 0.01 0.25 5.07 -17.43 -0.09 0.16 16 24 N -0.90 -24.70 11.04 55.49 0.61 -24.09 16 25 Si 0.89 19.82 29.57 -169.99 -5.03 14.80 16 26 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.28 -5.63 6.99 56.52 0.40 -5.24 16 29 C 0.16 3.66 4.87 -3.56 -0.02 3.65 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.07 8.03 -51.93 -0.42 0.66 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 34 H 0.12 2.19 8.08 -51.93 -0.42 1.77 16 35 H 0.39 6.49 6.76 -40.82 -0.28 6.22 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.84 6.40 -51.93 -0.33 0.51 16 40 H 0.04 0.53 8.14 -51.92 -0.42 0.10 16 41 H 0.06 1.15 7.66 -51.93 -0.40 0.76 16 42 H 0.05 0.88 7.41 -51.93 -0.38 0.50 16 43 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.10 2.63 6.11 -51.93 -0.32 2.31 16 LS Contribution 377.61 15.07 5.69 5.69 Total: -1.00 -29.24 377.61 -9.92 -39.15 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -7.85 Total: 9.19 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -1.84 Total: 3.68 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.53 Total: -59.12 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.80 kcal Atomic # 17 Polarization: 0.19 SS G_CDS: -1.51 Total: -1.32 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.24 -9.92 -39.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071566449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.995 kcal (2) G-P(sol) polarization free energy of solvation -29.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds