Wall clock time and date at job start Sat Apr 11 2020 06:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35463 * 126.43210 * 2 1 4 4 Cl 1.73610 * 127.23989 * 359.97438 * 3 2 1 5 5 C 1.41544 * 105.52402 * 180.13610 * 3 2 1 6 6 C 1.47670 * 126.46192 * 179.84268 * 5 3 2 7 7 O 1.21567 * 119.99926 * 359.71420 * 6 5 3 8 8 N 1.34777 * 119.99744 * 179.71647 * 6 5 3 9 9 C 1.46500 * 119.99651 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.50101 * 325.06194 * 9 8 6 11 11 C 1.53048 * 109.49713 * 205.00201 * 9 8 6 12 12 C 1.53049 * 109.53589 * 301.41295 * 11 9 8 13 13 C 1.53190 * 109.31440 * 298.63486 * 12 11 9 14 14 H 1.08998 * 109.58636 * 294.84808 * 13 12 11 15 15 C 1.52998 * 109.58677 * 174.56451 * 13 12 11 16 16 N 1.46934 * 108.77418 * 54.63341 * 13 12 11 17 17 C 1.36942 * 120.62825 * 126.36825 * 16 13 12 18 18 H 1.07998 * 119.99637 * 330.91709 * 17 16 13 19 19 C 1.38808 * 119.99822 * 150.91540 * 17 16 13 20 20 N 1.31618 * 120.00035 * 160.72660 * 19 17 16 21 21 Si 1.86804 * 119.99940 * 340.72915 * 19 17 16 22 22 H 1.48498 * 109.46932 * 92.33211 * 21 19 17 23 23 H 1.48497 * 109.46797 * 212.33152 * 21 19 17 24 24 H 1.48502 * 109.47149 * 332.33182 * 21 19 17 25 25 C 1.46918 * 118.73858 * 306.39227 * 16 13 12 26 26 N 1.31820 * 107.07506 * 359.58329 * 5 3 2 27 27 N 1.28463 * 110.13736 * 0.26088 * 26 5 3 28 28 C 1.46504 * 124.93712 * 180.02562 * 27 26 5 29 29 H 1.09004 * 109.47193 * 270.32471 * 1 2 3 30 30 H 1.08998 * 109.47127 * 30.32597 * 1 2 3 31 31 H 1.09000 * 109.46714 * 150.32785 * 1 2 3 32 32 H 0.96995 * 120.00459 * 0.02562 * 8 6 5 33 33 H 1.08997 * 109.45911 * 181.39554 * 11 9 8 34 34 H 1.08999 * 109.46083 * 61.43454 * 11 9 8 35 35 H 1.08997 * 109.49526 * 178.67886 * 12 11 9 36 36 H 1.09004 * 109.49542 * 58.59023 * 12 11 9 37 37 H 1.08994 * 109.47050 * 60.28275 * 15 13 12 38 38 H 1.09001 * 109.47050 * 180.28830 * 15 13 12 39 39 H 1.09009 * 109.47224 * 300.28210 * 15 13 12 40 40 H 0.96994 * 120.00055 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.59166 * 293.81994 * 25 16 13 42 42 H 1.09007 * 109.70456 * 173.46643 * 25 16 13 43 43 H 1.09002 * 109.46802 * 89.97229 * 28 27 26 44 44 H 1.09001 * 109.47502 * 209.97348 * 28 27 26 45 45 H 1.09000 * 109.46929 * 329.97404 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0899 0.0000 4 17 1.8234 2.7560 -0.0006 5 6 3.6337 0.5848 -0.0032 6 6 4.8773 1.3810 -0.0078 7 8 4.8215 2.5954 -0.0142 8 7 6.0742 0.7614 -0.0047 9 6 7.3079 1.5513 -0.0098 10 1 7.1599 2.4535 -0.6033 11 6 8.4429 0.7222 -0.6153 12 6 8.6293 -0.5611 0.1977 13 6 9.0098 -0.1986 1.6366 14 1 9.9843 0.2897 1.6449 15 6 9.0653 -1.4686 2.4879 16 7 7.9956 0.7166 2.1776 17 6 7.3623 0.4365 3.3591 18 1 7.2207 -0.5893 3.6658 19 6 6.9025 1.4710 4.1623 20 7 5.9849 1.2364 5.0763 21 14 7.5858 3.1960 3.9459 22 1 6.7304 3.9517 2.9959 23 1 7.6011 3.8906 5.2583 24 1 8.9690 3.1171 3.4114 25 6 7.6736 1.9377 1.4268 26 7 3.5456 -0.7305 0.0042 27 7 2.3126 -1.0911 0.0062 28 6 1.8446 -2.4794 0.0147 29 1 -0.3634 0.0058 1.0277 30 1 -0.3633 0.8870 -0.5189 31 1 -0.3633 -0.8929 -0.5087 32 1 6.1187 -0.2076 0.0000 33 1 9.3660 1.3014 -0.5960 34 1 8.1962 0.4666 -1.6458 35 1 9.4219 -1.1621 -0.2479 36 1 7.6988 -1.1290 0.1994 37 1 9.8140 -2.1473 2.0796 38 1 9.3311 -1.2080 3.5124 39 1 8.0899 -1.9554 2.4784 40 1 5.6638 1.9592 5.6378 41 1 8.5391 2.6003 1.4180 42 1 6.8298 2.4451 1.8947 43 1 1.7288 -2.8175 1.0444 44 1 0.8850 -2.5425 -0.4985 45 1 2.5717 -3.1110 -0.4956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071865807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:01 Heat of formation + Delta-G solvation = 64.384121 kcal Electronic energy + Delta-G solvation = -28975.750510 eV Core-core repulsion = 25056.915883 eV Total energy + Delta-G solvation = -3918.834627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.65230 -39.40341 -37.59561 -36.29288 -34.14098 -33.59858 -32.66065 -32.51443 -30.72472 -30.61166 -27.63147 -27.09396 -26.20724 -24.79775 -23.20822 -22.54312 -21.01071 -20.47450 -19.76930 -18.77618 -17.32986 -16.57103 -16.52789 -16.32056 -15.44075 -15.05158 -14.78061 -14.46300 -14.27183 -13.81619 -13.59075 -13.53336 -13.43377 -13.36056 -12.95909 -12.92439 -12.70932 -12.51138 -12.34710 -11.99764 -11.70485 -11.66228 -11.42720 -11.28767 -11.21234 -10.88953 -10.47741 -10.41819 -10.34664 -10.21577 -9.88225 -9.64009 -9.44525 -9.28436 -9.08136 -8.63069 -8.56844 -8.27805 -6.80110 -5.82794 -3.19418 1.67969 1.95837 2.03693 2.78404 3.50554 3.59176 3.61116 3.61902 3.89298 4.34082 4.45677 4.67042 4.75272 4.86085 4.96365 4.97139 5.14062 5.24881 5.29637 5.35119 5.39149 5.46079 5.57339 5.57676 5.64106 5.85161 6.01563 6.04001 6.12912 6.19919 6.29955 6.32628 6.38134 6.47207 6.56172 6.57676 6.63974 6.81970 7.01529 7.09599 7.13882 7.78477 8.08537 8.16963 8.46063 8.78109 9.05444 9.85647 10.22353 11.32893 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.004620 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.540715 B = 6059.216443 C = 6642.347380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.019 3.981 3 C -0.102 4.102 4 Cl -0.012 7.012 5 C 0.015 3.985 6 C 0.601 3.399 7 O -0.527 6.527 8 N -0.687 5.687 9 C 0.128 3.872 10 H 0.082 0.918 11 C -0.118 4.118 12 C -0.133 4.133 13 C 0.170 3.830 14 H 0.029 0.971 15 C -0.136 4.136 16 N -0.597 5.597 17 C -0.255 4.255 18 H 0.088 0.912 19 C 0.028 3.972 20 N -0.909 5.909 21 Si 0.874 3.126 22 H -0.283 1.283 23 H -0.306 1.306 24 H -0.271 1.271 25 C 0.114 3.886 26 N -0.244 5.244 27 N -0.280 5.280 28 C 0.089 3.911 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.404 0.596 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.039 0.961 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.260 0.740 41 H 0.032 0.968 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.255 -7.978 -14.346 18.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C -0.139 4.139 4 Cl 0.016 6.984 5 C -0.147 4.147 6 C 0.384 3.616 7 O -0.401 6.401 8 N -0.338 5.338 9 C 0.022 3.978 10 H 0.100 0.900 11 C -0.156 4.156 12 C -0.172 4.172 13 C 0.064 3.936 14 H 0.047 0.953 15 C -0.193 4.193 16 N -0.321 5.321 17 C -0.383 4.383 18 H 0.106 0.894 19 C -0.171 4.171 20 N -0.552 5.552 21 Si 0.705 3.295 22 H -0.211 1.211 23 H -0.234 1.234 24 H -0.196 1.196 25 C -0.013 4.013 26 N -0.079 5.079 27 N -0.069 5.069 28 C -0.051 4.051 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.240 0.760 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.790 -8.016 -14.185 18.060 hybrid contribution -0.228 1.338 0.168 1.368 sum -8.018 -6.678 -14.016 17.474 Atomic orbital electron populations 1.20369 0.86041 1.03897 1.03752 1.21024 0.95264 0.85877 1.08450 1.20483 0.92155 0.87501 1.13758 1.98341 1.90795 1.12110 1.97128 1.21912 0.94416 0.89331 1.09013 1.16676 0.81608 0.86382 0.76911 1.90797 1.86508 1.12507 1.50328 1.45623 1.04446 1.10608 1.73109 1.21512 0.83076 0.94246 0.98966 0.89999 1.21691 0.98103 0.97453 0.98382 1.22079 1.01009 0.96503 0.97624 1.20462 0.91246 0.91090 0.90804 0.95315 1.21795 1.00638 0.96236 1.00631 1.44363 1.43042 1.22073 1.22665 1.18816 1.30580 0.94096 0.94796 0.89411 1.25263 0.98051 0.97552 0.96234 1.69809 1.28728 1.32434 1.24278 0.87054 0.80261 0.86499 0.75733 1.21053 1.23396 1.19644 1.21776 0.99000 0.89829 0.90647 1.73633 1.01538 1.13899 1.18818 1.45207 1.02698 1.07221 1.51804 1.22188 1.01463 0.76637 1.04855 0.89838 0.89432 0.90871 0.76014 0.90923 0.92367 0.92414 0.92135 0.94240 0.91817 0.92548 0.92998 0.95044 0.90082 0.89308 0.88685 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 9.99 36.01 0.36 -0.33 16 2 C 0.02 0.25 6.94 -81.90 -0.57 -0.32 16 3 C -0.10 -1.74 6.79 -39.31 -0.27 -2.01 16 4 Cl -0.01 -0.21 27.93 -51.86 -1.45 -1.66 16 5 C 0.01 0.29 7.13 -82.76 -0.59 -0.30 16 6 C 0.60 12.75 7.79 -12.41 -0.10 12.66 16 7 O -0.53 -12.45 15.54 5.31 0.08 -12.37 16 8 N -0.69 -13.34 4.91 -54.69 -0.27 -13.61 16 9 C 0.13 2.43 2.81 -67.81 -0.19 2.24 16 10 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 11 C -0.12 -1.80 5.59 -26.68 -0.15 -1.94 16 12 C -0.13 -2.07 5.21 -26.61 -0.14 -2.21 16 13 C 0.17 3.26 3.49 -67.60 -0.24 3.02 16 14 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 15 C -0.14 -2.46 7.95 37.16 0.30 -2.17 16 16 N -0.60 -14.05 2.67 -164.77 -0.44 -14.49 16 17 C -0.25 -7.08 9.05 -15.06 -0.14 -7.21 16 18 H 0.09 2.57 6.40 -52.49 -0.34 2.24 16 19 C 0.03 0.83 5.24 -17.43 -0.09 0.74 16 20 N -0.91 -28.81 13.97 55.49 0.78 -28.03 16 21 Si 0.87 23.78 24.34 -169.99 -4.14 19.64 16 22 H -0.28 -7.86 6.62 56.52 0.37 -7.49 16 23 H -0.31 -8.43 7.11 56.52 0.40 -8.03 16 24 H -0.27 -7.12 6.63 56.52 0.37 -6.75 16 25 C 0.11 2.63 3.80 -3.71 -0.01 2.61 16 26 N -0.24 -4.10 11.66 33.42 0.39 -3.71 16 27 N -0.28 -3.67 3.72 -63.68 -0.24 -3.91 16 28 C 0.09 0.64 11.12 59.85 0.67 1.31 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.70 8.04 -51.93 -0.42 0.28 16 31 H 0.07 0.39 7.02 -51.93 -0.36 0.03 16 32 H 0.40 7.40 6.49 -40.82 -0.27 7.13 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.98 6.40 -51.93 -0.33 0.64 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 1.27 7.65 -51.93 -0.40 0.88 16 39 H 0.06 1.08 7.43 -51.92 -0.39 0.69 16 40 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 41 H 0.03 0.72 7.03 -51.93 -0.37 0.35 16 42 H 0.08 2.19 4.62 -51.92 -0.24 1.95 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.38 6.98 -51.93 -0.36 0.01 16 45 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 367.08 15.07 5.53 5.53 Total: -1.00 -36.29 367.08 -7.34 -43.63 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.43 Total: 2.89 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -1.16 Total: 6.08 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: 0.22 Total: -63.75 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.08 Total: -12.37 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -4.14 Total: 19.64 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.45 Total: -1.66 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.29 -7.34 -43.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071865807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.017 kcal (2) G-P(sol) polarization free energy of solvation -36.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds