Wall clock time and date at job start Sat Apr 11 2020 06:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35463 * 126.43210 * 2 1 4 4 Cl 1.73610 * 127.23989 * 359.97438 * 3 2 1 5 5 C 1.41544 * 105.52402 * 180.13610 * 3 2 1 6 6 C 1.47670 * 126.46192 * 179.84268 * 5 3 2 7 7 O 1.21567 * 119.99926 * 359.71420 * 6 5 3 8 8 N 1.34777 * 119.99744 * 179.71647 * 6 5 3 9 9 C 1.46500 * 119.99651 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.50101 * 325.06194 * 9 8 6 11 11 C 1.53048 * 109.49713 * 205.00201 * 9 8 6 12 12 C 1.53049 * 109.53589 * 301.41295 * 11 9 8 13 13 C 1.53190 * 109.31440 * 298.63486 * 12 11 9 14 14 H 1.08998 * 109.58636 * 294.84808 * 13 12 11 15 15 C 1.52998 * 109.58677 * 174.56451 * 13 12 11 16 16 N 1.46934 * 108.77418 * 54.63341 * 13 12 11 17 17 C 1.36942 * 120.62825 * 126.36825 * 16 13 12 18 18 H 1.07998 * 119.99637 * 330.91709 * 17 16 13 19 19 C 1.38808 * 119.99822 * 150.91540 * 17 16 13 20 20 N 1.31618 * 120.00035 * 160.72660 * 19 17 16 21 21 Si 1.86804 * 119.99940 * 340.72915 * 19 17 16 22 22 H 1.48498 * 109.46932 * 92.33211 * 21 19 17 23 23 H 1.48497 * 109.46797 * 212.33152 * 21 19 17 24 24 H 1.48502 * 109.47149 * 332.33182 * 21 19 17 25 25 C 1.46918 * 118.73858 * 306.39227 * 16 13 12 26 26 N 1.31820 * 107.07506 * 359.58329 * 5 3 2 27 27 N 1.28463 * 110.13736 * 0.26088 * 26 5 3 28 28 C 1.46504 * 124.93712 * 180.02562 * 27 26 5 29 29 H 1.09004 * 109.47193 * 270.32471 * 1 2 3 30 30 H 1.08998 * 109.47127 * 30.32597 * 1 2 3 31 31 H 1.09000 * 109.46714 * 150.32785 * 1 2 3 32 32 H 0.96995 * 120.00459 * 0.02562 * 8 6 5 33 33 H 1.08997 * 109.45911 * 181.39554 * 11 9 8 34 34 H 1.08999 * 109.46083 * 61.43454 * 11 9 8 35 35 H 1.08997 * 109.49526 * 178.67886 * 12 11 9 36 36 H 1.09004 * 109.49542 * 58.59023 * 12 11 9 37 37 H 1.08994 * 109.47050 * 60.28275 * 15 13 12 38 38 H 1.09001 * 109.47050 * 180.28830 * 15 13 12 39 39 H 1.09009 * 109.47224 * 300.28210 * 15 13 12 40 40 H 0.96994 * 120.00055 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.59166 * 293.81994 * 25 16 13 42 42 H 1.09007 * 109.70456 * 173.46643 * 25 16 13 43 43 H 1.09002 * 109.46802 * 89.97229 * 28 27 26 44 44 H 1.09001 * 109.47502 * 209.97348 * 28 27 26 45 45 H 1.09000 * 109.46929 * 329.97404 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0899 0.0000 4 17 1.8234 2.7560 -0.0006 5 6 3.6337 0.5848 -0.0032 6 6 4.8773 1.3810 -0.0078 7 8 4.8215 2.5954 -0.0142 8 7 6.0742 0.7614 -0.0047 9 6 7.3079 1.5513 -0.0098 10 1 7.1599 2.4535 -0.6033 11 6 8.4429 0.7222 -0.6153 12 6 8.6293 -0.5611 0.1977 13 6 9.0098 -0.1986 1.6366 14 1 9.9843 0.2897 1.6449 15 6 9.0653 -1.4686 2.4879 16 7 7.9956 0.7166 2.1776 17 6 7.3623 0.4365 3.3591 18 1 7.2207 -0.5893 3.6658 19 6 6.9025 1.4710 4.1623 20 7 5.9849 1.2364 5.0763 21 14 7.5858 3.1960 3.9459 22 1 6.7304 3.9517 2.9959 23 1 7.6011 3.8906 5.2583 24 1 8.9690 3.1171 3.4114 25 6 7.6736 1.9377 1.4268 26 7 3.5456 -0.7305 0.0042 27 7 2.3126 -1.0911 0.0062 28 6 1.8446 -2.4794 0.0147 29 1 -0.3634 0.0058 1.0277 30 1 -0.3633 0.8870 -0.5189 31 1 -0.3633 -0.8929 -0.5087 32 1 6.1187 -0.2076 0.0000 33 1 9.3660 1.3014 -0.5960 34 1 8.1962 0.4666 -1.6458 35 1 9.4219 -1.1621 -0.2479 36 1 7.6988 -1.1290 0.1994 37 1 9.8140 -2.1473 2.0796 38 1 9.3311 -1.2080 3.5124 39 1 8.0899 -1.9554 2.4784 40 1 5.6638 1.9592 5.6378 41 1 8.5391 2.6003 1.4180 42 1 6.8298 2.4451 1.8947 43 1 1.7288 -2.8175 1.0444 44 1 0.8850 -2.5425 -0.4985 45 1 2.5717 -3.1110 -0.4956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071865807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:01 Heat of formation + Delta-G solvation = 37.468606 kcal Electronic energy + Delta-G solvation = -28976.917654 eV Core-core repulsion = 25056.915883 eV Total energy + Delta-G solvation = -3920.001771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.79259 -40.98229 -39.22789 -37.54360 -35.85520 -34.70045 -34.44565 -33.49813 -32.56860 -32.20649 -28.66270 -28.14791 -27.69769 -26.57696 -24.65632 -24.11711 -22.21848 -22.03406 -21.10912 -20.45103 -18.58959 -18.33385 -17.75584 -17.57668 -17.24666 -16.69734 -16.22451 -15.93304 -15.78317 -15.32399 -15.13649 -15.04169 -14.55779 -14.44912 -14.28432 -14.16762 -13.84453 -13.70673 -13.52972 -13.41198 -13.24064 -13.09090 -12.82059 -12.64981 -12.52682 -12.47011 -12.36587 -12.14813 -11.80616 -11.74284 -11.66069 -11.38233 -11.13709 -11.04300 -10.70975 -10.26765 -9.96838 -9.74677 -8.79425 -8.13999 -5.42483 0.41099 0.76642 0.95410 1.29632 1.32030 1.39980 1.69108 2.16510 2.39437 2.42998 3.06967 3.32132 3.34235 3.53839 3.78983 3.91128 4.01043 4.12185 4.12655 4.30753 4.32473 4.36725 4.53963 4.56217 4.62980 4.66702 4.70617 4.76932 4.79795 4.86218 4.88443 4.98441 5.02488 5.06484 5.09378 5.19859 5.27327 5.52186 5.56728 5.63768 5.70250 5.93888 6.20268 6.46617 6.75700 6.96915 7.22783 7.69304 8.09723 9.05581 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.004620 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.540715 B = 6059.216443 C = 6642.347380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.040 3.960 3 C -0.139 4.139 4 Cl -0.023 7.023 5 C -0.027 4.027 6 C 0.591 3.409 7 O -0.565 6.565 8 N -0.681 5.681 9 C 0.130 3.870 10 H 0.081 0.919 11 C -0.109 4.109 12 C -0.123 4.123 13 C 0.159 3.841 14 H 0.041 0.959 15 C -0.129 4.129 16 N -0.607 5.607 17 C -0.217 4.217 18 H 0.068 0.932 19 C -0.034 4.034 20 N -0.957 5.957 21 Si 0.927 3.073 22 H -0.301 1.301 23 H -0.314 1.314 24 H -0.253 1.253 25 C 0.112 3.888 26 N -0.255 5.255 27 N -0.269 5.269 28 C 0.072 3.928 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.409 0.591 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.035 0.965 39 H 0.039 0.961 40 H 0.254 0.746 41 H 0.038 0.962 42 H 0.035 0.965 43 H 0.099 0.901 44 H 0.138 0.862 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.953 -10.527 -17.000 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 C -0.177 4.177 4 Cl 0.005 6.995 5 C -0.187 4.187 6 C 0.375 3.625 7 O -0.442 6.442 8 N -0.332 5.332 9 C 0.024 3.976 10 H 0.099 0.901 11 C -0.147 4.147 12 C -0.162 4.162 13 C 0.054 3.946 14 H 0.059 0.941 15 C -0.187 4.187 16 N -0.332 5.332 17 C -0.347 4.347 18 H 0.085 0.915 19 C -0.228 4.228 20 N -0.605 5.605 21 Si 0.758 3.242 22 H -0.230 1.230 23 H -0.244 1.244 24 H -0.177 1.177 25 C -0.015 4.015 26 N -0.092 5.092 27 N -0.059 5.059 28 C -0.065 4.065 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.132 0.868 32 H 0.246 0.754 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.117 0.883 44 H 0.156 0.844 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.425 -10.612 -16.888 21.283 hybrid contribution -0.369 1.936 0.934 2.180 sum -7.794 -8.677 -15.955 19.763 Atomic orbital electron populations 1.20624 0.82202 1.06150 1.05057 1.21708 0.97212 0.84613 1.05118 1.20803 0.92398 0.88115 1.16355 1.98318 1.90684 1.13165 1.97318 1.21757 0.94337 0.90457 1.12128 1.17138 0.82808 0.86329 0.76177 1.90750 1.87245 1.14093 1.52130 1.45633 1.04285 1.10817 1.72464 1.21501 0.84415 0.95423 0.96289 0.90083 1.21699 0.96881 0.96639 0.99440 1.21987 1.02094 0.97097 0.94996 1.20838 0.90356 0.90340 0.93035 0.94089 1.21732 1.01029 0.96596 0.99302 1.44518 1.44209 1.22958 1.21560 1.18802 1.27853 0.92828 0.95247 0.91456 1.25777 0.99419 1.00408 0.97161 1.69920 1.31242 1.32888 1.26442 0.86196 0.80154 0.83302 0.74525 1.22953 1.24366 1.17738 1.21704 0.97455 0.89469 0.92828 1.73540 1.03674 1.12750 1.19200 1.45854 1.01624 1.09214 1.49170 1.22783 1.03739 0.73589 1.06387 0.88754 0.89081 0.86775 0.75417 0.89147 0.89316 0.88261 0.92812 0.89925 0.94531 0.94184 0.93728 0.94428 0.94629 0.88300 0.84419 0.87144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 9.99 71.24 0.71 -0.40 16 2 C 0.04 0.99 6.94 41.33 0.29 1.28 16 3 C -0.14 -4.85 6.79 22.44 0.15 -4.69 16 4 Cl -0.02 -0.81 27.93 -2.72 -0.08 -0.89 16 5 C -0.03 -1.07 7.13 42.45 0.30 -0.77 16 6 C 0.59 25.99 7.79 86.73 0.68 26.66 16 7 O -0.56 -28.09 15.54 -3.93 -0.06 -28.15 16 8 N -0.68 -26.55 4.91 -445.20 -2.19 -28.74 16 9 C 0.13 4.81 2.81 45.07 0.13 4.94 16 10 H 0.08 3.03 7.58 -2.39 -0.02 3.01 16 11 C -0.11 -2.89 5.59 30.63 0.17 -2.72 16 12 C -0.12 -3.33 5.21 30.67 0.16 -3.17 16 13 C 0.16 5.66 3.49 44.97 0.16 5.82 16 14 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 15 C -0.13 -4.44 7.95 71.98 0.57 -3.86 16 16 N -0.61 -28.34 2.67 -675.23 -1.80 -30.14 16 17 C -0.22 -12.35 9.05 84.03 0.76 -11.59 16 18 H 0.07 4.07 6.40 -2.91 -0.02 4.06 16 19 C -0.03 -2.08 5.24 84.86 0.44 -1.64 16 20 N -0.96 -63.54 13.97 21.65 0.30 -63.23 16 21 Si 0.93 51.42 24.34 68.60 1.67 53.09 16 22 H -0.30 -17.39 6.62 99.48 0.66 -16.73 16 23 H -0.31 -17.64 7.11 99.48 0.71 -16.93 16 24 H -0.25 -13.03 6.63 99.48 0.66 -12.38 16 25 C 0.11 5.15 3.80 86.36 0.33 5.48 16 26 N -0.25 -8.46 11.66 -48.17 -0.56 -9.02 16 27 N -0.27 -6.52 3.72 -355.38 -1.32 -7.84 16 28 C 0.07 0.79 11.12 127.77 1.42 2.21 16 29 H 0.09 1.16 8.14 -2.38 -0.02 1.15 16 30 H 0.09 1.23 8.04 -2.39 -0.02 1.21 16 31 H 0.11 0.62 7.02 -2.39 -0.02 0.60 16 32 H 0.41 14.78 6.49 -92.71 -0.60 14.18 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.05 1.56 6.40 -2.38 -0.02 1.54 16 37 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.04 1.43 7.65 -2.39 -0.02 1.41 16 39 H 0.04 1.48 7.43 -2.38 -0.02 1.46 16 40 H 0.25 16.40 8.31 -92.71 -0.77 15.63 16 41 H 0.04 1.68 7.03 -2.39 -0.02 1.66 16 42 H 0.04 1.98 4.62 -2.38 -0.01 1.97 16 43 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.14 0.34 6.98 -2.39 -0.02 0.33 16 45 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -86.35 367.08 2.57 -83.78 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.33 Total: 13.61 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 6.27 Total: 17.53 kcal Atomic # 7 Polarization: -133.41 SS G_CDS: -5.57 Total: -138.98 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.06 Total: -28.15 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 1.67 Total: 53.09 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -86.35 2.57 -83.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071865807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.249 kcal (2) G-P(sol) polarization free energy of solvation -86.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds