Wall clock time and date at job start Sat Apr 11 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35461 * 126.43422 * 2 1 4 4 Cl 1.73600 * 127.23803 * 359.97438 * 3 2 1 5 5 C 1.41548 * 105.52480 * 179.97438 * 3 2 1 6 6 C 1.47664 * 126.46355 * 179.97438 * 5 3 2 7 7 O 1.21581 * 119.99932 * 0.02562 * 6 5 3 8 8 N 1.34774 * 120.00151 * 179.97438 * 6 5 3 9 9 C 1.46496 * 120.00026 * 180.02562 * 8 6 5 10 10 H 1.08992 * 109.50002 * 324.93361 * 9 8 6 11 11 C 1.53110 * 109.51432 * 204.87140 * 9 8 6 12 12 C 1.53038 * 109.50242 * 178.68604 * 11 9 8 13 13 C 1.53195 * 109.34267 * 61.34830 * 12 11 9 14 14 H 1.08991 * 109.58843 * 65.13325 * 13 12 11 15 15 C 1.53001 * 109.58793 * 185.56366 * 13 12 11 16 16 N 1.46930 * 108.77212 * 305.34776 * 13 12 11 17 17 C 1.36935 * 120.62926 * 233.58692 * 16 13 12 18 18 H 1.08000 * 120.00188 * 29.05289 * 17 16 13 19 19 C 1.38818 * 120.00092 * 209.05252 * 17 16 13 20 20 N 1.31620 * 119.99342 * 15.06278 * 19 17 16 21 21 Si 1.86795 * 120.00018 * 195.06135 * 19 17 16 22 22 H 1.48495 * 109.47287 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.46779 * 120.00451 * 21 19 17 24 24 H 1.48504 * 109.47072 * 239.99843 * 21 19 17 25 25 C 1.46923 * 118.73837 * 53.60789 * 16 13 12 26 26 N 1.31825 * 107.07321 * 0.23914 * 5 3 2 27 27 N 1.28470 * 110.13666 * 359.59403 * 26 5 3 28 28 C 1.46501 * 124.92884 * 180.14799 * 27 26 5 29 29 H 1.08997 * 109.46846 * 90.02385 * 1 2 3 30 30 H 1.09001 * 109.46990 * 210.02493 * 1 2 3 31 31 H 1.08997 * 109.46892 * 330.02754 * 1 2 3 32 32 H 0.97000 * 119.99876 * 359.97438 * 8 6 5 33 33 H 1.08993 * 109.50572 * 58.65837 * 11 9 8 34 34 H 1.09000 * 109.45009 * 298.67700 * 11 9 8 35 35 H 1.09000 * 109.49955 * 301.37868 * 12 11 9 36 36 H 1.08999 * 109.49853 * 181.31607 * 12 11 9 37 37 H 1.09000 * 109.47179 * 59.99206 * 15 13 12 38 38 H 1.08994 * 109.47056 * 180.02562 * 15 13 12 39 39 H 1.08999 * 109.47050 * 299.99666 * 15 13 12 40 40 H 0.97004 * 119.99493 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.58731 * 66.18021 * 25 16 13 42 42 H 1.08997 * 109.58692 * 186.46145 * 25 16 13 43 43 H 1.09007 * 109.47033 * 270.30826 * 28 27 26 44 44 H 1.08999 * 109.47689 * 30.31016 * 28 27 26 45 45 H 1.08999 * 109.46954 * 150.31339 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0898 0.0000 4 17 1.8235 2.7558 -0.0006 5 6 3.6338 0.5847 0.0006 6 6 4.8774 1.3808 0.0003 7 8 4.8217 2.5954 -0.0001 8 7 6.0743 0.7612 0.0015 9 6 7.3080 1.5511 0.0018 10 1 7.1614 2.4551 -0.5892 11 6 8.4451 0.7238 -0.6039 12 6 9.7261 1.5606 -0.6336 13 6 10.1154 1.9433 0.7978 14 1 10.3730 1.0452 1.3590 15 6 11.3141 2.8936 0.7667 16 7 8.9732 2.6121 1.4357 17 6 9.1206 3.8439 2.0153 18 1 9.8651 4.5311 1.6412 19 6 8.3132 4.2095 3.0836 20 7 7.6227 3.2942 3.7299 21 14 8.2068 6.0004 3.6040 22 1 9.0734 6.8241 2.7233 23 1 6.8011 6.4657 3.4917 24 1 8.6618 6.1348 5.0112 25 6 7.6699 1.9337 1.4403 26 7 3.5456 -0.7306 -0.0043 27 7 2.3126 -1.0912 0.0006 28 6 1.8446 -2.4795 0.0005 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 6.1187 -0.2078 0.0029 33 1 8.1801 0.4294 -1.6193 34 1 8.6078 -0.1678 0.0017 35 1 9.5567 2.4646 -1.2186 36 1 10.5298 0.9797 -1.0861 37 1 11.0505 3.7929 0.2100 38 1 11.5897 3.1643 1.7858 39 1 12.1564 2.4002 0.2818 40 1 7.0581 3.5497 4.4762 41 1 7.7281 1.0347 2.0540 42 1 6.9108 2.6035 1.8444 43 1 1.7292 -2.8239 -1.0273 44 1 2.5715 -3.1081 0.5148 45 1 0.8849 -2.5394 0.5136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071865809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:09 Heat of formation + Delta-G solvation = 57.328137 kcal Electronic energy + Delta-G solvation = -28034.949653 eV Core-core repulsion = 24115.809056 eV Total energy + Delta-G solvation = -3919.140597 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.81870 -39.16020 -37.44539 -36.40064 -34.27878 -33.74179 -32.74304 -32.65037 -30.60719 -29.75111 -27.77610 -27.23442 -25.83774 -24.88768 -23.04322 -22.12279 -21.10779 -20.43971 -19.57471 -19.04664 -17.37461 -16.70091 -16.47079 -16.30715 -15.43525 -14.97896 -14.84424 -14.20492 -13.97316 -13.76687 -13.69615 -13.60786 -13.40090 -13.28507 -13.16330 -12.87721 -12.59890 -12.56596 -12.28617 -11.78628 -11.77282 -11.43504 -11.36210 -11.04629 -10.80333 -10.64274 -10.56986 -10.40521 -10.30878 -10.16614 -9.87533 -9.71336 -9.36390 -9.35365 -9.23990 -8.73933 -8.39286 -8.32094 -6.52148 -5.64574 -3.09158 1.50394 1.83827 1.87143 2.64631 3.48069 3.55442 3.57047 3.58247 3.76048 4.19316 4.30883 4.60707 4.62719 4.69316 4.82684 4.96683 5.15240 5.27455 5.43172 5.44102 5.46413 5.51518 5.58733 5.66619 5.77854 5.96860 6.06002 6.20252 6.35045 6.39088 6.46708 6.47085 6.53292 6.59950 6.71242 6.84352 7.05440 7.11919 7.20605 7.42418 7.63388 7.86687 7.95309 8.09267 8.59424 8.73463 9.33936 9.98402 10.53566 11.43337 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012799 B = 0.003568 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.065754 B = 7846.584159 C = 9263.624257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.019 3.981 3 C -0.103 4.103 4 Cl -0.007 7.007 5 C 0.013 3.987 6 C 0.594 3.406 7 O -0.508 6.508 8 N -0.706 5.706 9 C 0.118 3.882 10 H 0.083 0.917 11 C -0.116 4.116 12 C -0.126 4.126 13 C 0.165 3.835 14 H 0.024 0.976 15 C -0.136 4.136 16 N -0.584 5.584 17 C -0.252 4.252 18 H 0.071 0.929 19 C 0.006 3.994 20 N -0.900 5.900 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.292 1.292 25 C 0.168 3.832 26 N -0.251 5.251 27 N -0.282 5.282 28 C 0.088 3.912 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.397 0.603 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.037 0.963 40 H 0.252 0.748 41 H 0.016 0.984 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.292 -13.837 -9.944 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C -0.140 4.140 4 Cl 0.021 6.979 5 C -0.149 4.149 6 C 0.376 3.624 7 O -0.380 6.380 8 N -0.357 5.357 9 C 0.013 3.987 10 H 0.102 0.898 11 C -0.154 4.154 12 C -0.166 4.166 13 C 0.058 3.942 14 H 0.042 0.958 15 C -0.194 4.194 16 N -0.307 5.307 17 C -0.381 4.381 18 H 0.088 0.912 19 C -0.193 4.193 20 N -0.544 5.544 21 Si 0.729 3.271 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.219 1.219 25 C 0.041 3.959 26 N -0.086 5.086 27 N -0.071 5.071 28 C -0.052 4.052 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.231 0.769 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.034 0.966 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.119 0.881 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.826 -13.847 -9.793 21.263 hybrid contribution -0.719 1.004 0.405 1.299 sum -13.544 -12.843 -9.387 20.893 Atomic orbital electron populations 1.20380 0.85949 1.04229 1.03576 1.21057 0.95315 0.85842 1.08348 1.20547 0.92162 0.87807 1.13507 1.98361 1.90762 1.11691 1.97062 1.22092 0.94681 0.89267 1.08826 1.16729 0.81460 0.86566 0.77676 1.90882 1.86143 1.12236 1.48717 1.45893 1.05449 1.10186 1.74130 1.22033 0.80916 0.93705 1.02075 0.89842 1.21684 0.95640 0.98620 0.99456 1.22046 0.95596 0.99167 0.99742 1.20486 0.88720 0.94227 0.90733 0.95798 1.21798 0.96213 0.99393 1.01952 1.44037 1.02649 1.18819 1.65202 1.19180 1.19398 0.90558 1.08984 0.91174 1.25065 1.00830 0.97459 0.95909 1.70009 1.31778 1.31213 1.21404 0.86278 0.77675 0.85328 0.77827 1.20239 1.21476 1.21893 1.21099 0.89280 0.96597 0.88947 1.73618 1.01641 1.13947 1.19425 1.45227 1.02705 1.07237 1.51944 1.22189 1.01787 0.76630 1.04549 0.89958 0.90764 0.89261 0.76934 0.93064 0.92284 0.92048 0.92738 0.92757 0.92053 0.94404 0.93819 0.96571 0.88522 0.89539 0.88144 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 9.99 36.01 0.36 -0.20 16 2 C 0.02 0.22 6.94 -81.90 -0.57 -0.35 16 3 C -0.10 -1.59 6.79 -39.31 -0.27 -1.86 16 4 Cl -0.01 -0.12 27.92 -51.86 -1.45 -1.57 16 5 C 0.01 0.23 7.13 -82.76 -0.59 -0.36 16 6 C 0.59 11.96 7.79 -12.41 -0.10 11.86 16 7 O -0.51 -12.07 15.54 5.29 0.08 -11.99 16 8 N -0.71 -13.08 5.08 -54.66 -0.28 -13.35 16 9 C 0.12 2.43 2.60 -67.78 -0.18 2.25 16 10 H 0.08 1.92 7.58 -51.93 -0.39 1.53 16 11 C -0.12 -1.98 5.36 -26.66 -0.14 -2.12 16 12 C -0.13 -2.22 5.37 -26.61 -0.14 -2.36 16 13 C 0.16 3.48 3.50 -67.59 -0.24 3.24 16 14 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 15 C -0.14 -2.62 7.94 37.16 0.30 -2.33 16 16 N -0.58 -14.98 2.99 -164.77 -0.49 -15.47 16 17 C -0.25 -7.06 8.61 -15.06 -0.13 -7.19 16 18 H 0.07 1.92 6.20 -52.49 -0.33 1.59 16 19 C 0.01 0.18 4.96 -17.43 -0.09 0.09 16 20 N -0.90 -27.44 11.14 55.49 0.62 -26.82 16 21 Si 0.90 22.98 29.58 -169.99 -5.03 17.95 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 C 0.17 4.23 4.87 -3.71 -0.02 4.22 16 26 N -0.25 -3.61 11.66 33.42 0.39 -3.22 16 27 N -0.28 -3.08 3.72 -63.68 -0.24 -3.32 16 28 C 0.09 0.45 11.12 59.85 0.67 1.12 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.31 7.03 -51.93 -0.36 -0.05 16 31 H 0.09 0.63 8.03 -51.93 -0.42 0.21 16 32 H 0.40 6.31 8.33 -40.82 -0.34 5.97 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 1.07 7.40 -51.93 -0.38 0.68 16 38 H 0.06 1.27 7.66 -51.93 -0.40 0.87 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 2.87 6.06 -51.93 -0.31 2.56 16 43 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.10 0.24 6.98 -51.93 -0.36 -0.12 16 LS Contribution 376.90 15.07 5.68 5.68 Total: -1.00 -35.61 376.90 -8.51 -44.12 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.66 Total: 1.97 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -1.13 Total: 6.01 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: 0.00 Total: -62.18 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.99 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.03 Total: 17.95 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.45 Total: -1.57 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.61 -8.51 -44.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071865809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.452 kcal (2) G-P(sol) polarization free energy of solvation -35.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds