Wall clock time and date at job start Sat Apr 11 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35461 * 126.43422 * 2 1 4 4 Cl 1.73600 * 127.23803 * 359.97438 * 3 2 1 5 5 C 1.41548 * 105.52480 * 179.97438 * 3 2 1 6 6 C 1.47664 * 126.46355 * 179.97438 * 5 3 2 7 7 O 1.21581 * 119.99932 * 0.02562 * 6 5 3 8 8 N 1.34774 * 120.00151 * 179.97438 * 6 5 3 9 9 C 1.46496 * 120.00026 * 180.02562 * 8 6 5 10 10 H 1.08992 * 109.50002 * 324.93361 * 9 8 6 11 11 C 1.53110 * 109.51432 * 204.87140 * 9 8 6 12 12 C 1.53038 * 109.50242 * 178.68604 * 11 9 8 13 13 C 1.53195 * 109.34267 * 61.34830 * 12 11 9 14 14 H 1.08991 * 109.58843 * 65.13325 * 13 12 11 15 15 C 1.53001 * 109.58793 * 185.56366 * 13 12 11 16 16 N 1.46930 * 108.77212 * 305.34776 * 13 12 11 17 17 C 1.36935 * 120.62926 * 233.58692 * 16 13 12 18 18 H 1.08000 * 120.00188 * 29.05289 * 17 16 13 19 19 C 1.38818 * 120.00092 * 209.05252 * 17 16 13 20 20 N 1.31620 * 119.99342 * 15.06278 * 19 17 16 21 21 Si 1.86795 * 120.00018 * 195.06135 * 19 17 16 22 22 H 1.48495 * 109.47287 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.46779 * 120.00451 * 21 19 17 24 24 H 1.48504 * 109.47072 * 239.99843 * 21 19 17 25 25 C 1.46923 * 118.73837 * 53.60789 * 16 13 12 26 26 N 1.31825 * 107.07321 * 0.23914 * 5 3 2 27 27 N 1.28470 * 110.13666 * 359.59403 * 26 5 3 28 28 C 1.46501 * 124.92884 * 180.14799 * 27 26 5 29 29 H 1.08997 * 109.46846 * 90.02385 * 1 2 3 30 30 H 1.09001 * 109.46990 * 210.02493 * 1 2 3 31 31 H 1.08997 * 109.46892 * 330.02754 * 1 2 3 32 32 H 0.97000 * 119.99876 * 359.97438 * 8 6 5 33 33 H 1.08993 * 109.50572 * 58.65837 * 11 9 8 34 34 H 1.09000 * 109.45009 * 298.67700 * 11 9 8 35 35 H 1.09000 * 109.49955 * 301.37868 * 12 11 9 36 36 H 1.08999 * 109.49853 * 181.31607 * 12 11 9 37 37 H 1.09000 * 109.47179 * 59.99206 * 15 13 12 38 38 H 1.08994 * 109.47056 * 180.02562 * 15 13 12 39 39 H 1.08999 * 109.47050 * 299.99666 * 15 13 12 40 40 H 0.97004 * 119.99493 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.58731 * 66.18021 * 25 16 13 42 42 H 1.08997 * 109.58692 * 186.46145 * 25 16 13 43 43 H 1.09007 * 109.47033 * 270.30826 * 28 27 26 44 44 H 1.08999 * 109.47689 * 30.31016 * 28 27 26 45 45 H 1.08999 * 109.46954 * 150.31339 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0898 0.0000 4 17 1.8235 2.7558 -0.0006 5 6 3.6338 0.5847 0.0006 6 6 4.8774 1.3808 0.0003 7 8 4.8217 2.5954 -0.0001 8 7 6.0743 0.7612 0.0015 9 6 7.3080 1.5511 0.0018 10 1 7.1614 2.4551 -0.5892 11 6 8.4451 0.7238 -0.6039 12 6 9.7261 1.5606 -0.6336 13 6 10.1154 1.9433 0.7978 14 1 10.3730 1.0452 1.3590 15 6 11.3141 2.8936 0.7667 16 7 8.9732 2.6121 1.4357 17 6 9.1206 3.8439 2.0153 18 1 9.8651 4.5311 1.6412 19 6 8.3132 4.2095 3.0836 20 7 7.6227 3.2942 3.7299 21 14 8.2068 6.0004 3.6040 22 1 9.0734 6.8241 2.7233 23 1 6.8011 6.4657 3.4917 24 1 8.6618 6.1348 5.0112 25 6 7.6699 1.9337 1.4403 26 7 3.5456 -0.7306 -0.0043 27 7 2.3126 -1.0912 0.0006 28 6 1.8446 -2.4795 0.0005 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 6.1187 -0.2078 0.0029 33 1 8.1801 0.4294 -1.6193 34 1 8.6078 -0.1678 0.0017 35 1 9.5567 2.4646 -1.2186 36 1 10.5298 0.9797 -1.0861 37 1 11.0505 3.7929 0.2100 38 1 11.5897 3.1643 1.7858 39 1 12.1564 2.4002 0.2818 40 1 7.0581 3.5497 4.4762 41 1 7.7281 1.0347 2.0540 42 1 6.9108 2.6035 1.8444 43 1 1.7292 -2.8239 -1.0273 44 1 2.5715 -3.1081 0.5148 45 1 0.8849 -2.5394 0.5136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071865809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:08 Heat of formation + Delta-G solvation = 31.928388 kcal Electronic energy + Delta-G solvation = -28036.051069 eV Core-core repulsion = 24115.809056 eV Total energy + Delta-G solvation = -3920.242013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.82766 -40.77606 -39.15705 -37.55182 -36.00163 -34.75807 -34.54423 -33.51407 -32.19593 -31.71118 -28.69942 -28.12825 -27.54407 -26.61985 -24.40501 -23.81980 -22.24391 -21.99186 -21.17645 -20.55723 -18.47226 -18.31323 -17.65577 -17.59732 -17.24523 -16.65791 -15.90697 -15.84536 -15.60151 -15.42252 -15.08720 -14.95018 -14.59121 -14.43657 -14.16363 -14.10036 -13.72733 -13.52856 -13.48050 -13.11412 -13.06923 -12.82762 -12.76479 -12.71244 -12.55132 -12.49244 -12.26924 -12.10537 -11.98772 -11.75412 -11.64370 -11.42964 -11.14679 -10.98055 -10.54026 -10.29615 -10.02302 -9.77328 -8.62302 -7.84035 -5.30450 0.36488 0.75422 0.93435 1.40048 1.45187 1.52938 1.66512 2.12894 2.29821 2.51378 3.25950 3.33410 3.51372 3.67414 3.81576 3.95422 4.09429 4.11143 4.26321 4.32930 4.38119 4.39775 4.60057 4.63719 4.70130 4.71783 4.76220 4.81861 4.85513 4.89688 5.01457 5.06298 5.07026 5.18807 5.30011 5.33030 5.45994 5.55978 5.62721 5.67193 5.71429 5.81031 6.39804 6.46789 6.73193 7.15526 7.23628 7.90748 8.40282 9.21266 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012799 B = 0.003568 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.065754 B = 7846.584159 C = 9263.624257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.043 3.957 3 C -0.139 4.139 4 Cl -0.025 7.025 5 C -0.026 4.026 6 C 0.588 3.412 7 O -0.557 6.557 8 N -0.696 5.696 9 C 0.132 3.868 10 H 0.055 0.945 11 C -0.107 4.107 12 C -0.117 4.117 13 C 0.153 3.847 14 H 0.022 0.978 15 C -0.129 4.129 16 N -0.603 5.603 17 C -0.249 4.249 18 H 0.077 0.923 19 C -0.054 4.054 20 N -0.935 5.935 21 Si 0.956 3.044 22 H -0.261 1.261 23 H -0.302 1.302 24 H -0.288 1.288 25 C 0.182 3.818 26 N -0.252 5.252 27 N -0.267 5.267 28 C 0.072 3.928 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.411 0.589 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.046 0.954 38 H 0.038 0.962 39 H 0.079 0.921 40 H 0.243 0.757 41 H -0.006 1.006 42 H 0.044 0.956 43 H 0.111 0.889 44 H 0.107 0.893 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.780 -16.626 -11.865 24.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 C -0.177 4.177 4 Cl 0.003 6.997 5 C -0.185 4.185 6 C 0.372 3.628 7 O -0.433 6.433 8 N -0.347 5.347 9 C 0.026 3.974 10 H 0.073 0.927 11 C -0.145 4.145 12 C -0.156 4.156 13 C 0.048 3.952 14 H 0.039 0.961 15 C -0.186 4.186 16 N -0.327 5.327 17 C -0.379 4.379 18 H 0.095 0.905 19 C -0.249 4.249 20 N -0.582 5.582 21 Si 0.785 3.215 22 H -0.184 1.184 23 H -0.230 1.230 24 H -0.214 1.214 25 C 0.054 3.946 26 N -0.089 5.089 27 N -0.057 5.057 28 C -0.065 4.065 29 H 0.122 0.878 30 H 0.129 0.871 31 H 0.103 0.897 32 H 0.248 0.752 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.052 0.948 41 H 0.012 0.988 42 H 0.062 0.938 43 H 0.130 0.870 44 H 0.125 0.875 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.276 -16.694 -11.745 24.349 hybrid contribution -0.623 1.688 0.980 2.049 sum -13.899 -15.006 -10.765 23.114 Atomic orbital electron populations 1.20633 0.82227 1.05861 1.05416 1.21676 0.97158 0.84527 1.04989 1.20824 0.92440 0.88130 1.16259 1.98339 1.90708 1.13330 1.97289 1.21651 0.93925 0.90449 1.12509 1.17235 0.82728 0.86388 0.76403 1.90836 1.87051 1.14480 1.50945 1.45735 1.04637 1.10709 1.73639 1.21610 0.83150 0.94124 0.98491 0.92655 1.21657 0.93623 0.98072 1.01130 1.21953 0.97029 0.99627 0.96997 1.20820 0.87853 0.94147 0.92409 0.96065 1.21728 0.96815 0.99120 1.00953 1.44336 1.04244 1.18671 1.65458 1.19539 1.18449 0.91830 1.08076 0.90534 1.25804 1.01497 1.00895 0.96730 1.70178 1.33087 1.32815 1.22106 0.85363 0.76880 0.81468 0.77821 1.18448 1.22967 1.21443 1.20736 0.88273 0.94203 0.91364 1.73537 1.03666 1.12358 1.19335 1.45886 1.01566 1.09223 1.48982 1.22813 1.03489 0.73346 1.06898 0.87816 0.87091 0.89665 0.75224 0.89739 0.91008 0.92765 0.88415 0.93500 0.94286 0.90174 0.94763 0.98777 0.93775 0.87027 0.87475 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 9.99 71.24 0.71 -0.12 16 2 C 0.04 0.89 6.94 41.33 0.29 1.18 16 3 C -0.14 -4.35 6.79 22.44 0.15 -4.20 16 4 Cl -0.03 -0.84 27.92 -2.72 -0.08 -0.91 16 5 C -0.03 -0.92 7.13 42.45 0.30 -0.61 16 6 C 0.59 25.05 7.79 86.73 0.68 25.73 16 7 O -0.56 -28.59 15.54 -3.97 -0.06 -28.65 16 8 N -0.70 -26.63 5.08 -445.11 -2.26 -28.89 16 9 C 0.13 5.60 2.60 45.09 0.12 5.72 16 10 H 0.06 2.67 7.58 -2.39 -0.02 2.65 16 11 C -0.11 -3.44 5.36 30.64 0.16 -3.27 16 12 C -0.12 -3.81 5.37 30.67 0.16 -3.65 16 13 C 0.15 6.30 3.50 44.98 0.16 6.46 16 14 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 15 C -0.13 -4.76 7.94 71.98 0.57 -4.19 16 16 N -0.60 -31.82 2.99 -675.22 -2.02 -33.84 16 17 C -0.25 -14.39 8.61 84.04 0.72 -13.66 16 18 H 0.08 4.25 6.20 -2.91 -0.02 4.23 16 19 C -0.05 -3.29 4.96 84.86 0.42 -2.87 16 20 N -0.94 -60.35 11.14 21.65 0.24 -60.11 16 21 Si 0.96 49.17 29.58 68.60 2.03 51.19 16 22 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.30 -16.09 7.11 99.48 0.71 -15.38 16 24 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 25 C 0.18 9.66 4.87 86.36 0.42 10.08 16 26 N -0.25 -7.01 11.66 -48.17 -0.56 -7.57 16 27 N -0.27 -5.14 3.72 -355.38 -1.32 -6.46 16 28 C 0.07 0.42 11.12 127.77 1.42 1.85 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.11 0.33 7.03 -2.39 -0.02 0.31 16 31 H 0.08 1.00 8.03 -2.39 -0.02 0.98 16 32 H 0.41 13.10 8.33 -92.71 -0.77 12.32 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.05 1.78 7.40 -2.39 -0.02 1.76 16 38 H 0.04 1.58 7.66 -2.39 -0.02 1.57 16 39 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.24 15.40 8.31 -92.71 -0.77 14.63 16 41 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H 0.04 2.82 6.06 -2.39 -0.01 2.80 16 43 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 44 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.13 -0.09 6.98 -2.39 -0.02 -0.11 16 Total: -1.00 -86.23 376.90 2.51 -83.73 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.24 Total: 13.08 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 6.29 Total: 18.43 kcal Atomic # 7 Polarization: -130.94 SS G_CDS: -5.92 Total: -136.87 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.06 Total: -28.65 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 2.03 Total: 51.19 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.91 kcal Total: -86.23 2.51 -83.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071865809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.654 kcal (2) G-P(sol) polarization free energy of solvation -86.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds