Wall clock time and date at job start Sat Apr 11 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35367 * 126.38515 * 2 1 4 4 C 1.41496 * 105.50410 * 180.02562 * 3 2 1 5 5 C 1.47708 * 126.52161 * 179.97438 * 4 3 2 6 6 O 1.21578 * 119.99756 * 0.02562 * 5 4 3 7 7 N 1.34779 * 120.00642 * 179.97438 * 5 4 3 8 8 C 1.47346 * 125.51659 * 0.03226 * 7 5 4 9 9 C 1.54860 * 104.90363 * 156.70641 * 8 7 5 10 10 C 1.54784 * 101.41862 * 37.27358 * 9 8 7 11 11 H 1.09006 * 113.40287 * 85.76078 * 10 9 8 12 12 C 1.53515 * 109.68354 * 212.86984 * 10 9 8 13 13 N 1.46654 * 107.04931 * 84.08984 * 12 10 9 14 14 C 1.36932 * 125.29109 * 197.35876 * 13 12 10 15 15 H 1.08001 * 120.00139 * 0.05381 * 14 13 12 16 16 C 1.38809 * 119.99912 * 180.02562 * 14 13 12 17 17 N 1.31614 * 120.00420 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99824 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47161 * 60.00028 * 18 16 14 20 20 H 1.48501 * 109.47042 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47296 * 299.99867 * 18 16 14 22 22 C 1.46495 * 109.42081 * 17.38481 * 13 12 10 23 23 C 1.47250 * 125.52526 * 180.02562 * 7 5 4 24 24 H 1.08996 * 112.73273 * 56.17468 * 23 7 5 25 25 N 1.31808 * 106.96218 * 0.26491 * 4 3 2 26 26 N 1.28469 * 110.07603 * 359.55756 * 25 4 3 27 27 C 1.46497 * 124.88596 * 180.15757 * 26 25 4 28 28 F 1.39903 * 109.46831 * 120.33871 * 27 26 25 29 29 F 1.39903 * 109.47011 * 240.33231 * 27 26 25 30 30 H 1.08997 * 109.47023 * 89.97053 * 1 2 3 31 31 H 1.08994 * 109.46568 * 209.97324 * 1 2 3 32 32 H 1.09005 * 109.46834 * 329.97123 * 1 2 3 33 33 H 1.08005 * 127.24784 * 0.02736 * 3 2 1 34 34 H 1.09000 * 110.35579 * 275.57238 * 8 7 5 35 35 H 1.09001 * 110.35394 * 37.75501 * 8 7 5 36 36 H 1.09000 * 111.08611 * 279.22111 * 9 8 7 37 37 H 1.08996 * 110.99755 * 155.29035 * 9 8 7 38 38 H 1.08997 * 109.92419 * 324.74273 * 12 10 9 39 39 H 1.09000 * 109.92120 * 203.44008 * 12 10 9 40 40 H 0.96999 * 120.00413 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.71712 * 117.76499 * 22 13 12 42 42 H 1.09001 * 109.71175 * 238.36286 * 22 13 12 43 43 H 1.08996 * 109.47287 * 0.34132 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3101 1.0898 0.0000 4 6 3.6321 0.5854 -0.0006 5 6 4.8765 1.3812 -0.0014 6 8 4.8214 2.5957 -0.0011 7 7 6.0731 0.7610 -0.0014 8 6 6.2813 -0.6977 -0.0013 9 6 7.6983 -0.8978 -0.5931 10 6 8.4559 0.3092 0.0109 11 1 8.8581 0.1144 1.0051 12 6 9.5242 0.7966 -0.9781 13 7 8.8567 1.6992 -1.9217 14 6 9.3549 2.0806 -3.1388 15 1 10.3134 1.7094 -3.4703 16 6 8.6277 2.9438 -3.9468 17 7 7.4596 3.3961 -3.5430 18 14 9.3071 3.4635 -5.6075 19 1 9.5103 2.2625 -6.4570 20 1 8.3460 4.3812 -6.2703 21 1 10.6048 4.1594 -5.4157 22 6 7.5742 2.1299 -1.3596 23 6 7.3842 1.4313 -0.0016 24 1 7.5046 2.1214 0.8335 25 7 3.5420 -0.7295 -0.0068 26 7 2.3081 -1.0871 -0.0007 27 6 1.8377 -2.4745 -0.0014 28 9 1.0635 -2.7050 1.1408 29 9 1.0633 -2.7037 -1.1438 30 1 -0.3633 0.0005 -1.0276 31 1 -0.3632 -0.8902 0.5134 32 1 -0.3633 0.8898 0.5143 33 1 2.0057 2.1261 0.0004 34 1 6.2366 -1.0870 1.0158 35 1 5.5349 -1.1871 -0.6270 36 1 7.6799 -0.8433 -1.6816 37 1 8.1322 -1.8397 -0.2577 38 1 9.9493 -0.0521 -1.5137 39 1 10.3085 1.3324 -0.4433 40 1 6.9513 3.9990 -4.1078 41 1 7.5787 3.2109 -1.2194 42 1 6.7647 1.8499 -2.0337 43 1 2.6943 -3.1485 -0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075836652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:19 Heat of formation + Delta-G solvation = 0.560658 kcal Electronic energy + Delta-G solvation = -30537.680843 eV Core-core repulsion = 26064.281943 eV Total energy + Delta-G solvation = -4473.398900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.85655 -47.92484 -42.83405 -39.89693 -37.66857 -34.87295 -33.21351 -32.95621 -32.08137 -30.58583 -28.76155 -27.49011 -27.11308 -26.22148 -24.47341 -23.60687 -22.10306 -21.24290 -20.42456 -19.50931 -18.63800 -18.39803 -18.25362 -17.85745 -16.93200 -16.48285 -15.91924 -15.44583 -15.25917 -14.72079 -14.59901 -14.43530 -14.25019 -14.03717 -13.92359 -13.55758 -13.54525 -13.37682 -13.24371 -12.96232 -12.65006 -12.61390 -12.21410 -12.10638 -11.68006 -11.49830 -11.10803 -11.01878 -10.92297 -10.71949 -10.37724 -10.15230 -9.98104 -9.81607 -9.70725 -9.64884 -9.60026 -9.15180 -8.52425 -8.12948 -6.74971 -5.61137 -2.97925 1.31197 1.46445 1.98365 3.00984 3.26767 3.45018 3.48853 3.51287 3.61957 3.65702 4.10586 4.23076 4.43554 4.55656 4.64498 4.95014 4.97809 5.18223 5.26600 5.33663 5.41244 5.49201 5.56101 5.62550 5.68947 5.73617 5.85085 5.92986 5.98757 6.13933 6.17549 6.25162 6.31709 6.46108 6.65451 6.66766 6.70869 6.91787 7.51848 7.64981 7.69883 7.96007 7.98833 8.36382 8.55393 9.29791 9.90779 10.53846 11.48150 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.003192 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.962848 B = 8770.229610 C = 9327.330678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.025 3.975 3 C -0.169 4.169 4 C 0.034 3.966 5 C 0.609 3.391 6 O -0.516 6.516 7 N -0.591 5.591 8 C 0.106 3.894 9 C -0.122 4.122 10 C -0.111 4.111 11 H 0.088 0.912 12 C 0.145 3.855 13 N -0.602 5.602 14 C -0.235 4.235 15 H 0.078 0.922 16 C -0.005 4.005 17 N -0.914 5.914 18 Si 0.910 3.090 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.179 3.821 23 C 0.114 3.886 24 H 0.083 0.917 25 N -0.252 5.252 26 N -0.351 5.351 27 C 0.497 3.503 28 F -0.176 7.176 29 F -0.175 7.175 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.170 0.830 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.017 0.983 40 H 0.253 0.747 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.937 -14.625 10.895 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.196 4.196 4 C -0.130 4.130 5 C 0.394 3.606 6 O -0.389 6.389 7 N -0.325 5.325 8 C -0.017 4.017 9 C -0.160 4.160 10 C -0.131 4.131 11 H 0.107 0.893 12 C 0.018 3.982 13 N -0.329 5.329 14 C -0.363 4.363 15 H 0.096 0.904 16 C -0.202 4.202 17 N -0.560 5.560 18 Si 0.741 3.259 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.054 3.946 23 C 0.011 3.989 24 H 0.101 0.899 25 N -0.084 5.084 26 N -0.148 5.148 27 C 0.363 3.637 28 F -0.158 7.158 29 F -0.156 7.156 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.187 0.813 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.056 0.944 39 H 0.034 0.966 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -12.579 -14.904 10.709 22.249 hybrid contribution -0.377 0.896 -0.920 1.339 sum -12.957 -14.008 9.788 21.445 Atomic orbital electron populations 1.20456 0.86236 1.04255 1.03784 1.21532 0.95711 0.86513 1.05856 1.21653 0.90258 0.99832 1.07861 1.22230 0.95653 0.89059 1.06096 1.16375 0.80454 0.86035 0.77695 1.90854 1.85778 1.12297 1.49954 1.48338 1.05064 1.07665 1.71406 1.22393 0.97960 0.80866 1.00497 1.22757 0.93684 0.97511 1.02021 1.22961 0.96156 0.94764 0.99216 0.89343 1.21070 0.93205 0.93335 0.90540 1.44124 1.18707 1.52968 1.17109 1.18952 1.02147 1.23361 0.91875 0.90446 1.24839 0.96838 0.99762 0.98764 1.69990 1.12864 1.36221 1.36967 0.86233 0.77798 0.78101 0.83784 1.21249 1.21633 1.21153 1.21286 0.88788 0.96789 0.87772 1.22900 0.79927 0.94664 1.01398 0.89893 1.73641 0.99197 1.15603 1.19934 1.46499 1.04748 1.06499 1.57082 1.21120 0.88263 0.82119 0.72236 1.93132 1.78079 1.93586 1.50996 1.93153 1.78021 1.93588 1.50867 0.89836 0.91034 0.89045 0.81297 0.92047 0.89715 0.89607 0.90595 0.94355 0.96563 0.93614 0.93610 0.92603 0.81238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 9.96 36.01 0.36 -0.34 16 2 C 0.02 0.29 6.79 -82.20 -0.56 -0.27 16 3 C -0.17 -2.40 10.73 -39.37 -0.42 -2.82 16 4 C 0.03 0.56 6.96 -82.77 -0.58 -0.02 16 5 C 0.61 12.12 7.57 -12.39 -0.09 12.03 16 6 O -0.52 -12.04 17.01 5.30 0.09 -11.95 16 7 N -0.59 -11.05 2.83 -163.05 -0.46 -11.52 16 8 C 0.11 1.57 6.11 -2.60 -0.02 1.55 16 9 C -0.12 -1.83 6.32 -24.81 -0.16 -1.99 16 10 C -0.11 -1.88 3.97 -88.26 -0.35 -2.23 16 11 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 12 C 0.15 2.95 6.50 -3.69 -0.02 2.93 16 13 N -0.60 -15.63 3.37 -172.25 -0.58 -16.21 16 14 C -0.24 -6.67 10.25 -15.06 -0.15 -6.82 16 15 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 16 C 0.00 -0.14 5.48 -17.43 -0.10 -0.24 16 17 N -0.91 -28.16 10.23 55.49 0.57 -27.59 16 18 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 C 0.18 4.63 4.62 -3.58 -0.02 4.61 16 23 C 0.11 2.31 3.81 -65.90 -0.25 2.06 16 24 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 25 N -0.25 -3.52 9.09 33.42 0.30 -3.22 16 26 N -0.35 -4.06 3.56 -62.36 -0.22 -4.29 16 27 C 0.50 3.85 5.86 59.85 0.35 4.20 16 28 F -0.18 -1.38 16.42 2.25 0.04 -1.35 16 29 F -0.17 -1.49 17.30 2.25 0.04 -1.45 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.50 6.90 -51.93 -0.36 0.14 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.17 2.22 8.06 -52.48 -0.42 1.80 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.24 6.23 -51.93 -0.32 0.91 16 36 H 0.09 1.55 7.93 -51.93 -0.41 1.14 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.04 0.75 7.95 -51.93 -0.41 0.34 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.05 1.36 7.51 -51.93 -0.39 0.97 16 42 H 0.06 1.64 6.89 -51.93 -0.36 1.28 16 43 H 0.17 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -35.43 358.37 -7.46 -42.90 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -5.61 Total: -1.00 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: -2.01 Total: 12.65 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.39 Total: -62.83 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.95 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.08 Total: -2.80 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.43 -7.46 -42.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075836652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.456 kcal (2) G-P(sol) polarization free energy of solvation -35.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds