Wall clock time and date at job start Sat Apr 11 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 110.65413 * 2 1 4 4 C 1.51580 * 110.59726 * 237.09056 * 2 1 3 5 5 O 1.21231 * 127.16245 * 61.50618 * 4 2 1 6 6 N 1.34770 * 105.68325 * 241.46641 * 4 2 1 7 7 C 1.33792 * 111.64376 * 359.77021 * 6 4 2 8 8 O 1.21541 * 123.77008 * 180.24657 * 7 6 4 9 9 N 1.34528 * 112.45612 * 0.40484 * 7 6 4 10 10 C 1.46506 * 126.68743 * 179.87435 * 9 7 6 11 11 C 1.50695 * 109.46874 * 269.68801 * 10 9 7 12 12 O 1.21274 * 120.00413 * 0.27298 * 11 10 9 13 13 N 1.34784 * 119.99635 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99971 * 179.97438 * 13 11 10 15 15 H 1.09004 * 110.64143 * 34.29983 * 14 13 11 16 16 C 1.54326 * 110.72245 * 271.15910 * 14 13 11 17 17 N 1.47021 * 107.27143 * 219.44464 * 16 14 13 18 18 C 1.36937 * 125.64660 * 178.97601 * 17 16 14 19 19 H 1.08000 * 120.00293 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99884 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99965 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99993 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47155 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47020 * 120.00549 * 22 20 18 25 25 H 1.48504 * 109.46789 * 239.99968 * 22 20 18 26 26 C 1.47422 * 108.70276 * 358.93852 * 17 16 14 27 27 C 1.55122 * 104.94415 * 24.00469 * 26 17 16 28 28 H 1.08995 * 110.93803 * 81.21601 * 27 26 17 29 29 O 1.42908 * 111.16281 * 205.13360 * 27 26 17 30 30 H 1.09006 * 109.46519 * 297.08113 * 1 2 3 31 31 H 1.08990 * 109.47172 * 57.08242 * 1 2 3 32 32 H 1.08997 * 109.46786 * 177.09189 * 1 2 3 33 33 H 1.09000 * 109.46912 * 182.91701 * 3 2 1 34 34 H 1.09004 * 109.46940 * 302.91775 * 3 2 1 35 35 H 1.09004 * 109.47095 * 62.91408 * 3 2 1 36 36 H 0.96998 * 124.18182 * 179.97438 * 6 4 2 37 37 H 1.09005 * 109.46943 * 149.68718 * 10 9 7 38 38 H 1.09002 * 109.47064 * 29.68981 * 10 9 7 39 39 H 0.96999 * 120.00044 * 0.02562 * 13 11 10 40 40 H 1.08999 * 109.87843 * 338.86269 * 16 14 13 41 41 H 1.08997 * 109.88293 * 99.86971 * 16 14 13 42 42 H 0.96999 * 119.99953 * 180.02562 * 21 20 18 43 43 H 1.08999 * 110.36904 * 142.97213 * 26 17 16 44 44 H 1.09010 * 110.36511 * 265.18195 * 26 17 16 45 45 H 0.96693 * 113.99790 * 292.17184 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0697 1.4317 0.0000 4 6 2.0633 -0.7709 -1.1912 5 8 1.8895 -0.5186 -2.3642 6 7 2.7716 -1.7947 -0.6751 7 6 2.7642 -1.7751 0.6626 8 8 3.3376 -2.5943 1.3535 9 7 2.0484 -0.7492 1.1575 10 6 1.8318 -0.4348 2.5720 11 6 0.5888 -1.1348 3.0575 12 8 -0.0504 -1.8319 2.2983 13 7 0.1900 -0.9900 4.3368 14 6 -1.0188 -1.6700 4.8087 15 1 -1.1340 -2.6353 4.3156 16 6 -2.2651 -0.7886 4.5816 17 7 -3.1325 -0.9477 5.7579 18 6 -4.3310 -0.3159 5.9570 19 1 -4.7114 0.3675 5.2124 20 6 -5.0569 -0.5540 7.1160 21 7 -4.5935 -1.3873 8.0233 22 14 -6.6915 0.3084 7.3879 23 1 -6.9862 1.1877 6.2282 24 1 -7.7682 -0.7046 7.5281 25 1 -6.6190 1.1280 8.6242 26 6 -2.4987 -1.9007 6.6872 27 6 -0.9856 -1.8417 6.3504 28 1 -0.5132 -0.9839 6.8290 29 8 -0.3279 -3.0564 6.7165 30 1 -0.3632 0.4679 0.9151 31 1 -0.3633 0.5584 -0.8626 32 1 -0.3633 -1.0263 -0.0521 33 1 3.1583 1.4097 -0.0523 34 1 1.6753 1.9687 -0.8627 35 1 1.7600 1.9368 0.9150 36 1 3.2325 -2.4616 -1.2077 37 1 1.7123 0.6421 2.6907 38 1 2.6895 -0.7716 3.1545 39 1 0.7030 -0.4350 4.9449 40 1 -1.9673 0.2549 4.4789 41 1 -2.7906 -1.1141 3.6838 42 1 -5.1009 -1.5539 8.8330 43 1 -2.6708 -1.5955 7.7194 44 1 -2.8843 -2.9066 6.5205 45 1 -0.2828 -3.2071 7.6705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077946664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:22 Heat of formation + Delta-G solvation = -85.717946 kcal Electronic energy + Delta-G solvation = -30755.430688 eV Core-core repulsion = 26389.377982 eV Total energy + Delta-G solvation = -4366.052706 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.78607 -39.80836 -38.89957 -37.89656 -36.83999 -35.17542 -35.05759 -34.12613 -32.63736 -31.75882 -29.14624 -28.00459 -27.86230 -26.80382 -24.69232 -24.43410 -22.28422 -21.14712 -20.81806 -20.37243 -20.00971 -18.41139 -17.67462 -17.18539 -16.91099 -16.75078 -16.41949 -16.17726 -15.95957 -15.40510 -14.98573 -14.72362 -14.63199 -14.44458 -14.00801 -13.87340 -13.54942 -13.28612 -13.03187 -12.95661 -12.88582 -12.57979 -12.43687 -12.19566 -11.94454 -11.82705 -11.56839 -11.33967 -11.09539 -11.03073 -10.89889 -10.64320 -10.44059 -10.26678 -10.18138 -9.99119 -9.78318 -9.47083 -9.12743 -8.86662 -8.77771 -6.98146 -5.77840 -3.20625 1.30477 1.82423 2.58803 2.64944 2.73471 3.28681 3.33643 3.39615 3.41842 3.62557 4.16094 4.33985 4.38233 4.54889 4.56384 4.69496 4.87772 5.05738 5.09628 5.21136 5.24723 5.36238 5.41568 5.50408 5.54983 5.56593 5.59358 5.71366 5.79662 5.96632 5.97919 6.02736 6.12514 6.38212 6.58124 6.72301 6.83232 7.04996 7.26466 7.46217 7.55798 7.67022 7.83412 8.05583 8.19395 8.27082 9.08053 9.68659 10.30575 11.26375 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.002713 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.999235 B =10317.501784 C =11362.445698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.120 3.880 3 C -0.146 4.146 4 C 0.538 3.462 5 O -0.467 6.467 6 N -0.679 5.679 7 C 0.709 3.291 8 O -0.539 6.539 9 N -0.598 5.598 10 C 0.132 3.868 11 C 0.491 3.509 12 O -0.524 6.524 13 N -0.712 5.712 14 C 0.143 3.857 15 H 0.100 0.900 16 C 0.132 3.868 17 N -0.600 5.600 18 C -0.224 4.224 19 H 0.081 0.919 20 C -0.010 4.010 21 N -0.923 5.923 22 Si 0.917 3.083 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.129 3.871 27 C 0.067 3.933 28 H 0.062 0.938 29 O -0.565 6.565 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.431 0.569 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.399 0.601 40 H 0.029 0.971 41 H 0.032 0.968 42 H 0.253 0.747 43 H 0.113 0.887 44 H 0.025 0.975 45 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.857 6.067 -11.113 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.031 3.969 3 C -0.204 4.204 4 C 0.323 3.677 5 O -0.336 6.336 6 N -0.349 5.349 7 C 0.410 3.590 8 O -0.411 6.411 9 N -0.336 5.336 10 C 0.007 3.993 11 C 0.275 3.725 12 O -0.400 6.400 13 N -0.363 5.363 14 C 0.038 3.962 15 H 0.118 0.882 16 C 0.005 3.995 17 N -0.328 5.328 18 C -0.352 4.352 19 H 0.099 0.901 20 C -0.206 4.206 21 N -0.572 5.572 22 Si 0.748 3.252 23 H -0.204 1.204 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.003 3.997 27 C 0.007 3.993 28 H 0.080 0.920 29 O -0.370 6.370 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.274 0.726 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.233 0.767 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.130 0.870 44 H 0.043 0.957 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 16.419 5.310 -12.262 21.170 hybrid contribution -0.534 0.261 0.856 1.042 sum 15.886 5.571 -11.406 20.334 Atomic orbital electron populations 1.21975 0.89256 1.04874 1.03817 1.21587 0.98085 0.93972 0.83253 1.21996 1.01779 0.91950 1.04636 1.20738 0.76727 0.80466 0.89780 1.90824 1.56854 1.69357 1.16578 1.44318 1.51372 1.30558 1.08616 1.15742 0.79802 0.81936 0.81535 1.91036 1.48706 1.40799 1.60604 1.47142 1.52549 1.28609 1.05343 1.21141 0.98010 1.01527 0.78656 1.20980 0.86612 0.82331 0.82575 1.90724 1.55923 1.38616 1.54701 1.45932 1.28247 1.51015 1.11122 1.22022 0.83708 0.96722 0.93750 0.88205 1.21597 0.89748 0.96310 0.91854 1.44288 1.20920 1.50757 1.16786 1.19140 0.94136 1.19216 1.02661 0.90140 1.24808 0.99270 0.99548 0.96938 1.69744 1.38437 1.38768 1.10220 0.85952 0.82981 0.78608 0.77670 1.20435 1.21637 1.21668 1.22585 0.84964 0.93284 0.98820 1.23658 0.96431 0.85955 0.93298 0.92013 1.86428 1.80101 1.41955 1.28491 0.90380 0.90295 0.90339 0.91440 0.89548 0.90106 0.72649 0.86440 0.86141 0.76713 0.95264 0.94985 0.93599 0.86955 0.95695 0.77537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 7.57 37.16 0.28 -1.09 16 2 C 0.12 1.05 1.14 -132.09 -0.15 0.90 16 3 C -0.15 -0.83 8.79 37.16 0.33 -0.50 16 4 C 0.54 5.42 7.48 -10.56 -0.08 5.34 16 5 O -0.47 -5.62 18.02 5.60 0.10 -5.52 16 6 N -0.68 -6.63 5.70 -15.79 -0.09 -6.72 16 7 C 0.71 8.57 8.68 -88.02 -0.76 7.81 16 8 O -0.54 -8.34 17.71 5.33 0.09 -8.25 16 9 N -0.60 -6.02 1.99 -166.44 -0.33 -6.36 16 10 C 0.13 1.15 6.33 -5.19 -0.03 1.11 16 11 C 0.49 6.47 7.47 -10.98 -0.08 6.39 16 12 O -0.52 -9.05 14.39 5.56 0.08 -8.97 16 13 N -0.71 -9.35 5.12 -52.03 -0.27 -9.61 16 14 C 0.14 2.53 3.00 -66.10 -0.20 2.33 16 15 H 0.10 2.05 7.62 -51.93 -0.40 1.65 16 16 C 0.13 2.69 7.00 -3.06 -0.02 2.67 16 17 N -0.60 -14.72 3.40 -169.94 -0.58 -15.30 16 18 C -0.22 -6.00 10.27 -15.06 -0.15 -6.15 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -25.75 10.09 55.49 0.56 -25.19 16 22 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.13 2.97 5.63 -2.42 -0.01 2.96 16 27 C 0.07 1.19 4.06 -24.47 -0.10 1.09 16 28 H 0.06 0.99 8.00 -51.93 -0.42 0.58 16 29 O -0.57 -9.42 13.48 -35.23 -0.47 -9.90 16 30 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.98 7.54 -51.93 -0.39 0.58 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.34 7.43 -51.93 -0.39 -0.04 16 36 H 0.43 3.29 8.96 -40.82 -0.37 2.92 16 37 H 0.12 0.56 7.36 -51.93 -0.38 0.18 16 38 H 0.12 0.92 8.02 -51.93 -0.42 0.50 16 39 H 0.40 3.93 8.54 -40.82 -0.35 3.58 16 40 H 0.03 0.56 8.03 -51.93 -0.42 0.15 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 43 H 0.11 2.84 5.88 -51.93 -0.31 2.53 16 44 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 45 H 0.38 4.75 9.12 45.56 0.42 5.16 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -36.20 374.91 -6.84 -43.04 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.48 Total: 8.33 kcal Atomic # 6 Polarization: 23.57 SS G_CDS: -1.08 Total: 22.49 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: -0.71 Total: -63.18 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.20 Total: -32.64 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.20 -6.84 -43.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077946664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.683 kcal (2) G-P(sol) polarization free energy of solvation -36.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds