Wall clock time and date at job start Sat Apr 11 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 110.53966 * 2 1 4 4 N 1.47311 * 110.59736 * 122.83229 * 2 1 3 5 5 C 1.34526 * 106.61922 * 118.52201 * 4 2 1 6 6 O 1.21541 * 123.76606 * 179.97438 * 5 4 2 7 7 N 1.33788 * 112.45748 * 0.02562 * 5 4 2 8 8 C 1.46505 * 124.17508 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.47064 * 90.02387 * 8 7 5 10 10 O 1.21278 * 119.99985 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00161 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00271 * 180.02562 * 11 9 8 13 13 H 1.08998 * 110.64024 * 34.29331 * 12 11 9 14 14 C 1.54327 * 110.71639 * 271.15408 * 12 11 9 15 15 N 1.47029 * 107.26712 * 219.44116 * 14 12 11 16 16 C 1.36937 * 125.64155 * 178.97853 * 15 14 12 17 17 H 1.07994 * 120.00687 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99443 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00374 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99964 * 180.02562 * 18 16 15 21 21 H 1.48488 * 109.47385 * 89.99504 * 20 18 16 22 22 H 1.48504 * 109.46737 * 210.00013 * 20 18 16 23 23 H 1.48500 * 109.46704 * 329.99458 * 20 18 16 24 24 C 1.47423 * 108.70516 * 358.94522 * 15 14 12 25 25 C 1.55121 * 104.94129 * 23.99719 * 24 15 14 26 26 H 1.09007 * 110.93255 * 81.22414 * 25 24 15 27 27 O 1.42906 * 111.16162 * 205.13036 * 25 24 15 28 28 C 1.34757 * 111.64640 * 0.22471 * 7 5 4 29 29 O 1.21235 * 127.15948 * 179.73402 * 28 7 5 30 30 H 1.09000 * 109.47139 * 298.62816 * 1 2 3 31 31 H 1.09005 * 109.46814 * 58.62114 * 1 2 3 32 32 H 1.08998 * 109.47685 * 178.62050 * 1 2 3 33 33 H 1.08992 * 109.47351 * 181.37858 * 3 2 1 34 34 H 1.09004 * 109.46778 * 301.37908 * 3 2 1 35 35 H 1.08996 * 109.47066 * 61.37512 * 3 2 1 36 36 H 0.96999 * 126.69356 * 298.55898 * 4 2 1 37 37 H 1.09002 * 109.47068 * 210.02355 * 8 7 5 38 38 H 1.09001 * 109.47372 * 330.02443 * 8 7 5 39 39 H 0.97005 * 119.99463 * 359.97438 * 11 9 8 40 40 H 1.08996 * 109.88605 * 338.85667 * 14 12 11 41 41 H 1.09001 * 109.87994 * 99.87769 * 14 12 11 42 42 H 0.97002 * 120.00182 * 180.02562 * 19 18 16 43 43 H 1.08993 * 110.36800 * 142.96801 * 24 15 14 44 44 H 1.09008 * 110.35998 * 265.18122 * 24 15 14 45 45 H 0.96702 * 113.99924 * 292.17458 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0668 1.4327 0.0000 4 7 2.0482 -0.7476 1.1587 5 6 2.7598 -1.7772 0.6653 6 8 3.3289 -2.5983 1.3575 7 7 2.7718 -1.7956 -0.6724 8 6 3.4688 -2.8035 -1.4754 9 6 2.5393 -3.9573 -1.7506 10 8 1.4063 -3.9397 -1.3182 11 7 2.9673 -5.0092 -2.4763 12 6 2.0635 -6.1306 -2.7443 13 1 1.0385 -5.7786 -2.8605 14 6 2.1547 -7.1856 -1.6217 15 7 2.0913 -8.5086 -2.2599 16 6 2.1605 -9.7121 -1.6102 17 1 2.2707 -9.7405 -0.5363 18 6 2.0888 -10.8955 -2.3321 19 7 1.9539 -10.8610 -3.6409 20 14 2.1824 -12.5373 -1.4459 21 1 0.8145 -12.9748 -1.0686 22 1 2.7962 -13.5495 -2.3426 23 1 3.0110 -12.3926 -0.2221 24 6 1.9403 -8.3250 -3.7148 25 6 2.5204 -6.9153 -4.0023 26 1 3.6079 -6.9479 -4.0690 27 8 1.9532 -6.3562 -5.1889 28 6 2.0681 -0.7695 -1.1900 29 8 1.8990 -0.5156 -2.3634 30 1 -0.3633 0.4924 0.9020 31 1 -0.3633 0.5351 -0.8774 32 1 -0.3634 -1.0273 -0.0247 33 1 3.1563 1.4125 -0.0247 34 1 1.6931 1.9607 -0.8774 35 1 1.7333 1.9457 0.9020 36 1 1.9041 -0.5387 2.0949 37 1 3.7868 -2.3600 -2.4190 38 1 4.3418 -3.1623 -0.9302 39 1 3.8736 -5.0234 -2.8219 40 1 3.0980 -7.0769 -1.0865 41 1 1.3204 -7.0645 -0.9306 42 1 1.9034 -11.6880 -4.1453 43 1 2.5048 -9.0858 -4.2538 44 1 0.8876 -8.3650 -3.9948 45 1 2.2104 -6.8137 -6.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078124570.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:25 Heat of formation + Delta-G solvation = -86.127001 kcal Electronic energy + Delta-G solvation = -30521.547481 eV Core-core repulsion = 26155.477038 eV Total energy + Delta-G solvation = -4366.070444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.82778 -39.71357 -38.84585 -37.87168 -36.82791 -35.42480 -35.07435 -34.10937 -31.95715 -31.68628 -29.47830 -28.10423 -27.99697 -26.82207 -24.64889 -24.28898 -22.51505 -21.18242 -20.73106 -20.28088 -19.98720 -18.25950 -17.85678 -17.13261 -16.89466 -16.64565 -16.17892 -16.05789 -15.96113 -15.39431 -14.99819 -14.80576 -14.60056 -14.38944 -14.06412 -13.88301 -13.56406 -13.26845 -13.11686 -12.89889 -12.75561 -12.73065 -12.64737 -12.25432 -12.05117 -11.87761 -11.52987 -11.28196 -11.05548 -11.00984 -10.83994 -10.63890 -10.39527 -10.19053 -9.94255 -9.85611 -9.74348 -9.66736 -9.26378 -8.85078 -8.72560 -6.92990 -5.72921 -3.15312 1.38180 1.80549 2.62446 2.71172 2.79877 3.30168 3.38185 3.43229 3.45049 3.57583 4.09375 4.30950 4.38726 4.59552 4.62682 4.66040 4.89954 4.98450 5.05231 5.07590 5.16829 5.20742 5.26304 5.40980 5.42361 5.47533 5.60118 5.64117 5.67852 5.83706 6.06409 6.16675 6.42259 6.48875 6.66794 6.75741 6.87626 7.09496 7.30156 7.50186 7.57966 7.71159 7.88230 8.08312 8.22772 8.27641 9.13371 9.73616 10.35866 11.31433 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020396 B = 0.002572 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.518570 B =10882.447605 C =11671.531327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.120 3.880 3 C -0.146 4.146 4 N -0.720 5.720 5 C 0.709 3.291 6 O -0.537 6.537 7 N -0.560 5.560 8 C 0.098 3.902 9 C 0.501 3.499 10 O -0.530 6.530 11 N -0.708 5.708 12 C 0.143 3.857 13 H 0.100 0.900 14 C 0.130 3.870 15 N -0.600 5.600 16 C -0.222 4.222 17 H 0.080 0.920 18 C -0.011 4.011 19 N -0.925 5.925 20 Si 0.918 3.082 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.130 3.870 25 C 0.067 3.933 26 H 0.063 0.937 27 O -0.565 6.565 28 C 0.535 3.465 29 O -0.460 6.460 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.439 0.561 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.400 0.600 40 H 0.032 0.968 41 H 0.033 0.967 42 H 0.253 0.747 43 H 0.114 0.886 44 H 0.025 0.975 45 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.564 25.295 3.745 25.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.030 3.970 3 C -0.204 4.204 4 N -0.385 5.385 5 C 0.410 3.590 6 O -0.409 6.409 7 N -0.305 5.305 8 C -0.027 4.027 9 C 0.285 3.715 10 O -0.405 6.405 11 N -0.360 5.360 12 C 0.038 3.962 13 H 0.118 0.882 14 C 0.003 3.997 15 N -0.328 5.328 16 C -0.350 4.350 17 H 0.098 0.902 18 C -0.206 4.206 19 N -0.574 5.574 20 Si 0.748 3.252 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.004 3.996 25 C 0.007 3.993 26 H 0.081 0.919 27 O -0.370 6.370 28 C 0.322 3.678 29 O -0.329 6.329 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.284 0.716 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.234 0.766 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.131 0.869 44 H 0.043 0.957 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.729 25.123 4.101 25.602 hybrid contribution 0.579 -1.293 0.309 1.450 sum 3.308 23.830 4.410 24.460 Atomic orbital electron populations 1.22011 0.89920 1.04520 1.04194 1.21460 0.97483 0.94017 0.84044 1.22004 1.02006 0.91921 1.04467 1.45616 1.54923 1.28972 1.09013 1.15759 0.79748 0.82093 0.81443 1.91042 1.48384 1.40938 1.60549 1.45819 1.49768 1.27093 1.07865 1.21497 0.95353 0.87910 0.97927 1.20613 0.88611 0.83611 0.78673 1.90726 1.19638 1.79698 1.50481 1.45862 1.16662 1.19323 1.54111 1.22040 0.94674 0.85149 0.94326 0.88168 1.21616 0.99067 0.85324 0.93666 1.44290 1.86341 0.99867 1.02265 1.19116 1.42573 0.81830 0.91471 0.90169 1.24803 1.02094 0.97906 0.95831 1.69731 1.57148 1.25774 1.04713 0.86012 0.77727 0.83116 0.78305 1.21519 1.21589 1.20596 1.22585 0.99240 0.91542 0.86228 1.23667 0.96158 0.95804 0.83694 0.91925 1.86420 1.75186 1.58857 1.16537 1.20782 0.76782 0.80263 0.90005 1.90804 1.56050 1.69510 1.16509 0.90211 0.89756 0.90790 0.91404 0.89664 0.90159 0.71629 0.85677 0.85384 0.76559 0.95048 0.94893 0.93587 0.86892 0.95685 0.77532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.99 37.16 0.33 -0.69 16 2 C 0.12 0.93 1.37 -132.09 -0.18 0.75 16 3 C -0.15 -0.69 8.98 37.16 0.33 -0.35 16 4 N -0.72 -6.03 5.90 -52.94 -0.31 -6.35 16 5 C 0.71 8.96 8.62 -88.02 -0.76 8.20 16 6 O -0.54 -8.65 17.48 5.33 0.09 -8.56 16 7 N -0.56 -6.86 2.09 -122.02 -0.26 -7.12 16 8 C 0.10 1.12 6.18 -5.19 -0.03 1.09 16 9 C 0.50 7.91 7.90 -10.98 -0.09 7.82 16 10 O -0.53 -10.57 16.12 5.56 0.09 -10.48 16 11 N -0.71 -10.73 5.12 -52.04 -0.27 -11.00 16 12 C 0.14 2.74 3.00 -66.10 -0.20 2.55 16 13 H 0.10 2.17 7.62 -51.93 -0.40 1.77 16 14 C 0.13 2.91 7.00 -3.06 -0.02 2.88 16 15 N -0.60 -15.52 3.40 -169.93 -0.58 -16.09 16 16 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 17 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 18 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 19 N -0.92 -26.49 10.09 55.49 0.56 -25.93 16 20 Si 0.92 22.04 29.55 -169.99 -5.02 17.02 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 C 0.13 3.10 5.63 -2.42 -0.01 3.09 16 25 C 0.07 1.26 4.06 -24.47 -0.10 1.16 16 26 H 0.06 1.07 8.01 -51.93 -0.42 0.65 16 27 O -0.57 -9.70 13.48 -35.23 -0.47 -10.17 16 28 C 0.54 6.16 6.99 -10.56 -0.07 6.08 16 29 O -0.46 -6.29 17.75 5.60 0.10 -6.19 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.44 2.50 8.96 -40.82 -0.37 2.13 16 37 H 0.13 1.08 8.00 -51.93 -0.42 0.67 16 38 H 0.13 1.21 7.86 -51.93 -0.41 0.80 16 39 H 0.40 4.65 8.54 -40.82 -0.35 4.31 16 40 H 0.03 0.68 8.03 -51.93 -0.42 0.27 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.11 2.94 5.87 -51.93 -0.30 2.63 16 44 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 45 H 0.38 4.89 9.12 45.56 0.42 5.31 16 LS Contribution 380.07 15.07 5.73 5.73 Total: -1.00 -38.06 380.07 -6.97 -45.03 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -5.58 Total: 8.29 kcal Atomic # 6 Polarization: 26.86 SS G_CDS: -1.05 Total: 25.81 kcal Atomic # 7 Polarization: -65.63 SS G_CDS: -0.85 Total: -66.48 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.19 Total: -35.40 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.06 -6.97 -45.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078124570.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.099 kcal (2) G-P(sol) polarization free energy of solvation -38.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds