Wall clock time and date at job start Sat Apr 11 2020 06:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 110.65487 * 2 1 4 4 C 1.51582 * 110.69671 * 237.13608 * 2 1 3 5 5 O 1.21240 * 127.15473 * 61.57651 * 4 2 1 6 6 N 1.34766 * 105.68540 * 241.76385 * 4 2 1 7 7 C 1.33788 * 111.64424 * 359.77593 * 6 4 2 8 8 O 1.21543 * 123.76714 * 179.97438 * 7 6 4 9 9 N 1.34528 * 112.46010 * 0.02562 * 7 6 4 10 10 C 1.46499 * 126.69110 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.46943 * 90.02160 * 10 9 7 12 12 O 1.21281 * 119.99853 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99870 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99779 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.78157 * 36.78420 * 14 13 11 16 16 C 1.54322 * 110.71961 * 273.54529 * 14 13 11 17 17 N 1.47017 * 107.27442 * 219.44532 * 16 14 13 18 18 C 1.36938 * 125.64981 * 178.98039 * 17 16 14 19 19 H 1.08000 * 120.00398 * 349.93474 * 18 17 16 20 20 C 1.38816 * 120.00207 * 169.94320 * 18 17 16 21 21 N 1.31624 * 119.99580 * 350.41769 * 20 18 17 22 22 Si 1.86797 * 120.00252 * 170.41912 * 20 18 17 23 23 H 1.48500 * 109.47032 * 94.13825 * 22 20 18 24 24 H 1.48500 * 109.47027 * 214.13643 * 22 20 18 25 25 H 1.48502 * 109.47194 * 334.13957 * 22 20 18 26 26 C 1.47422 * 108.70246 * 358.94134 * 17 16 14 27 27 C 1.54911 * 104.83149 * 24.12982 * 26 17 16 28 28 H 1.09000 * 111.00308 * 204.91402 * 27 26 17 29 29 O 1.42895 * 111.00492 * 81.06185 * 27 26 17 30 30 H 1.08998 * 109.47536 * 297.09025 * 1 2 3 31 31 H 1.09000 * 109.47161 * 57.09583 * 1 2 3 32 32 H 1.09004 * 109.47130 * 177.08732 * 1 2 3 33 33 H 1.08994 * 109.47036 * 182.91089 * 3 2 1 34 34 H 1.09003 * 109.46611 * 302.91050 * 3 2 1 35 35 H 1.09001 * 109.47332 * 62.90692 * 3 2 1 36 36 H 0.97004 * 124.17506 * 179.74326 * 6 4 2 37 37 H 1.08999 * 109.47338 * 330.02843 * 10 9 7 38 38 H 1.08992 * 109.47120 * 210.02670 * 10 9 7 39 39 H 0.96996 * 120.00020 * 0.02562 * 13 11 10 40 40 H 1.08997 * 109.88571 * 338.86830 * 16 14 13 41 41 H 1.09005 * 109.88485 * 99.87238 * 16 14 13 42 42 H 0.97003 * 119.99654 * 179.97438 * 21 20 18 43 43 H 1.09002 * 110.36992 * 142.96498 * 26 17 16 44 44 H 1.08999 * 110.37167 * 265.29038 * 26 17 16 45 45 H 0.96703 * 113.99636 * 67.80926 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0697 1.4317 0.0000 4 6 2.0657 -0.7695 -1.1911 5 8 1.8942 -0.5156 -2.3641 6 7 2.7687 -1.7968 -0.6748 7 6 2.7557 -1.7808 0.6629 8 8 3.3198 -2.6065 1.3539 9 7 2.0479 -0.7494 1.1577 10 6 1.8301 -0.4357 2.5720 11 6 2.9271 0.4756 3.0591 12 8 3.8041 0.8286 2.2995 13 7 2.9329 0.8991 4.3386 14 6 3.9991 1.7854 4.8119 15 1 4.2862 2.4941 4.0352 16 6 5.2200 0.9676 5.2831 17 7 5.7450 1.6229 6.4899 18 6 6.8165 1.1958 7.2280 19 1 7.2513 0.2257 7.0375 20 6 7.3437 2.0096 8.2214 21 7 6.9428 3.2585 8.3306 22 14 8.6222 1.3323 9.4030 23 1 9.9816 1.6447 8.8936 24 1 8.4394 1.9536 10.7393 25 1 8.4618 -0.1397 9.5153 26 6 4.9276 2.8166 6.7732 27 6 3.5617 2.5306 6.1006 28 1 3.0435 3.4585 5.8586 29 8 2.7497 1.6931 6.9260 30 1 -0.3634 0.4680 0.9149 31 1 -0.3633 0.5583 -0.8628 32 1 -0.3633 -1.0264 -0.0522 33 1 3.1581 1.4097 -0.0522 34 1 1.6753 1.9686 -0.8628 35 1 1.7599 1.9368 0.9149 36 1 3.2270 -2.4656 -1.2074 37 1 1.8382 -1.3572 3.1541 38 1 0.8666 0.0601 2.6901 39 1 2.2313 0.6170 4.9460 40 1 4.9150 -0.0522 5.5180 41 1 5.9818 0.9561 4.5036 42 1 7.3109 3.8271 9.0249 43 1 4.8017 2.9437 7.8485 44 1 5.3870 3.7034 6.3368 45 1 2.4522 2.1159 7.7432 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083919251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:33 Heat of formation + Delta-G solvation = -118.095977 kcal Electronic energy + Delta-G solvation = -30823.879561 eV Core-core repulsion = 26456.422838 eV Total energy + Delta-G solvation = -4367.456722 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.60441 -40.98634 -39.86503 -39.33683 -37.75000 -36.35505 -35.95536 -35.38668 -33.72118 -33.21512 -30.59349 -29.46936 -28.43444 -28.28918 -26.32019 -25.42239 -23.33744 -22.39672 -21.91292 -21.57622 -21.13773 -19.31354 -19.15879 -18.40598 -18.18830 -17.64883 -17.40170 -17.08801 -16.94735 -16.82848 -16.13078 -16.06374 -15.75458 -15.56633 -15.39995 -15.10120 -14.66897 -14.56112 -14.34526 -14.12462 -13.78853 -13.61834 -13.50259 -13.16441 -13.13275 -12.94862 -12.78396 -12.74437 -12.55780 -12.27547 -12.12594 -11.99213 -11.93730 -11.87362 -11.54654 -11.30039 -11.22109 -10.81603 -10.76247 -10.10633 -10.03113 -8.88846 -7.92719 -5.26692 0.47031 1.04100 1.44336 1.44878 1.55068 1.60703 1.82426 1.88731 2.28277 2.48284 2.86274 3.20236 3.28036 3.51546 3.59074 3.75560 3.85235 3.88415 3.90603 3.97229 4.31385 4.32763 4.48598 4.51034 4.60561 4.67129 4.75557 4.77118 4.86420 4.86715 4.96761 4.98666 5.13085 5.20136 5.26719 5.37175 5.40177 5.53120 5.61870 5.89051 6.15522 6.25163 6.62678 6.93200 6.96571 7.05997 7.30348 7.70196 8.35048 9.18370 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.002605 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.945580 B =10745.120464 C =11295.934912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.122 3.878 3 C -0.136 4.136 4 C 0.537 3.463 5 O -0.488 6.488 6 N -0.674 5.674 7 C 0.703 3.297 8 O -0.580 6.580 9 N -0.593 5.593 10 C 0.135 3.865 11 C 0.485 3.515 12 O -0.571 6.571 13 N -0.693 5.693 14 C 0.160 3.840 15 H 0.096 0.904 16 C 0.131 3.869 17 N -0.615 5.615 18 C -0.248 4.248 19 H 0.067 0.933 20 C -0.055 4.055 21 N -0.943 5.943 22 Si 0.976 3.024 23 H -0.288 1.288 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.148 3.852 27 C 0.095 3.905 28 H 0.102 0.898 29 O -0.561 6.561 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.437 0.563 37 H 0.131 0.869 38 H 0.173 0.827 39 H 0.422 0.578 40 H 0.020 0.980 41 H -0.001 1.001 42 H 0.251 0.749 43 H 0.052 0.948 44 H 0.009 0.991 45 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.014 -3.418 -13.936 26.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.034 3.966 3 C -0.194 4.194 4 C 0.324 3.676 5 O -0.359 6.359 6 N -0.344 5.344 7 C 0.404 3.596 8 O -0.456 6.456 9 N -0.331 5.331 10 C 0.011 3.989 11 C 0.271 3.729 12 O -0.449 6.449 13 N -0.346 5.346 14 C 0.054 3.946 15 H 0.114 0.886 16 C 0.004 3.996 17 N -0.342 5.342 18 C -0.377 4.377 19 H 0.085 0.915 20 C -0.249 4.249 21 N -0.591 5.591 22 Si 0.804 3.196 23 H -0.215 1.215 24 H -0.211 1.211 25 H -0.199 1.199 26 C 0.023 3.977 27 C 0.035 3.965 28 H 0.120 0.880 29 O -0.369 6.369 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.281 0.719 37 H 0.149 0.851 38 H 0.190 0.810 39 H 0.260 0.740 40 H 0.038 0.962 41 H 0.017 0.983 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.027 0.973 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -21.059 -3.721 -14.885 26.056 hybrid contribution 1.752 -0.361 1.114 2.107 sum -19.307 -4.081 -13.771 24.064 Atomic orbital electron populations 1.22048 0.86767 1.04592 1.06376 1.21779 0.99214 0.93923 0.81678 1.21925 1.01020 0.91546 1.04861 1.21047 0.76430 0.80135 0.89996 1.90815 1.57965 1.69610 1.17511 1.44288 1.51425 1.30561 1.08098 1.15993 0.79193 0.82576 0.81885 1.91019 1.49583 1.43436 1.61594 1.47316 1.52767 1.26657 1.06310 1.21416 0.98680 1.01089 0.77731 1.21862 0.87827 0.81283 0.81927 1.90726 1.39759 1.58259 1.56173 1.45599 1.28303 1.49470 1.11269 1.21691 0.86952 0.91486 0.94507 0.88602 1.21650 0.94272 0.95676 0.88007 1.44544 1.33263 1.28906 1.27447 1.19303 1.06597 0.99542 1.12288 0.91513 1.25558 1.01749 0.95804 1.01789 1.70090 1.47518 1.05891 1.35620 0.85116 0.78429 0.77785 0.78262 1.21536 1.21081 1.19901 1.22016 0.88573 0.88110 0.99019 1.23241 0.90938 0.92971 0.89380 0.88004 1.86212 1.69306 1.44277 1.37091 0.87494 0.88654 0.90944 0.93798 0.88710 0.89566 0.71943 0.85090 0.80970 0.73973 0.96191 0.98343 0.93958 0.92958 0.97330 0.75253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.80 71.98 0.63 -0.26 16 2 C 0.12 1.76 1.14 2.98 0.00 1.77 16 3 C -0.14 -2.13 7.58 71.98 0.55 -1.59 16 4 C 0.54 10.13 7.48 87.94 0.66 10.79 16 5 O -0.49 -11.13 18.02 -2.90 -0.05 -11.18 16 6 N -0.67 -13.22 5.70 -441.12 -2.52 -15.73 16 7 C 0.70 17.09 8.68 179.44 1.56 18.65 16 8 O -0.58 -18.95 17.71 -3.85 -0.07 -19.01 16 9 N -0.59 -10.76 1.99 -798.95 -1.59 -12.36 16 10 C 0.14 1.95 6.33 85.63 0.54 2.49 16 11 C 0.49 11.86 7.49 87.66 0.66 12.52 16 12 O -0.57 -19.22 14.46 -3.03 -0.04 -19.27 16 13 N -0.69 -16.98 5.09 -436.91 -2.22 -19.20 16 14 C 0.16 5.37 3.12 46.18 0.14 5.52 16 15 H 0.10 3.35 7.70 -2.39 -0.02 3.33 16 16 C 0.13 5.92 6.99 86.73 0.61 6.53 16 17 N -0.62 -32.25 3.39 -692.00 -2.35 -34.60 16 18 C -0.25 -14.42 10.24 84.03 0.86 -13.56 16 19 H 0.07 3.87 7.85 -2.91 -0.02 3.85 16 20 C -0.06 -3.14 5.40 84.86 0.46 -2.68 16 21 N -0.94 -55.16 10.68 21.65 0.23 -54.93 16 22 Si 0.98 46.08 29.56 68.60 2.03 48.11 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 24 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 25 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 26 C 0.15 6.78 5.15 86.86 0.45 7.23 16 27 C 0.10 2.98 4.28 31.99 0.14 3.11 16 28 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 29 O -0.56 -15.25 12.23 -148.98 -1.82 -17.08 16 30 H 0.11 0.15 7.43 -2.39 -0.02 0.13 16 31 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.04 1.01 7.55 -2.39 -0.02 0.99 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.19 7.90 -2.39 -0.02 1.17 16 36 H 0.44 7.03 8.96 -92.71 -0.83 6.19 16 37 H 0.13 1.78 8.03 -2.39 -0.02 1.76 16 38 H 0.17 0.58 7.35 -2.39 -0.02 0.56 16 39 H 0.42 8.08 7.57 -92.71 -0.70 7.38 16 40 H 0.02 0.93 8.03 -2.39 -0.02 0.91 16 41 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 42 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 43 H 0.05 2.63 6.94 -2.39 -0.02 2.61 16 44 H 0.01 0.44 8.07 -2.39 -0.02 0.42 16 45 H 0.40 8.04 9.12 -74.06 -0.68 7.36 16 Total: -1.00 -85.05 374.35 -2.30 -87.34 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -1.14 Total: 17.40 kcal Atomic # 6 Polarization: 43.26 SS G_CDS: 7.25 Total: 50.51 kcal Atomic # 7 Polarization: -128.37 SS G_CDS: -8.45 Total: -136.82 kcal Atomic # 8 Polarization: -64.55 SS G_CDS: -1.99 Total: -66.54 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -85.05 -2.30 -87.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083919251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.752 kcal (2) G-P(sol) polarization free energy of solvation -85.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds