Wall clock time and date at job start Sat Apr 11 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35372 * 126.38957 * 2 1 4 4 C 1.41494 * 105.50398 * 180.13928 * 3 2 1 5 5 C 1.47715 * 126.51757 * 179.84031 * 4 3 2 6 6 O 1.21572 * 119.99712 * 359.71891 * 5 4 3 7 7 N 1.34770 * 120.00181 * 179.71460 * 5 4 3 8 8 C 1.47810 * 135.01328 * 0.02562 * 7 5 4 9 9 C 1.54652 * 85.79126 * 153.84333 * 8 7 5 10 10 H 1.08993 * 114.44346 * 140.42793 * 9 8 7 11 11 C 1.53016 * 110.83639 * 270.23144 * 9 8 7 12 12 C 1.53105 * 109.44711 * 143.88620 * 11 9 8 13 13 N 1.46621 * 108.01007 * 301.03101 * 12 11 9 14 14 C 1.36942 * 119.88844 * 237.32622 * 13 12 11 15 15 H 1.08001 * 120.00064 * 24.86836 * 14 13 12 16 16 C 1.38805 * 119.99944 * 204.86641 * 14 13 12 17 17 N 1.31617 * 120.00144 * 14.86003 * 16 14 13 18 18 Si 1.86799 * 120.00028 * 194.85809 * 16 14 13 19 19 H 1.48500 * 109.47286 * 94.96588 * 18 16 14 20 20 H 1.48496 * 109.47366 * 214.96758 * 18 16 14 21 21 H 1.48505 * 109.47335 * 334.96816 * 18 16 14 22 22 C 1.45317 * 119.57364 * 58.79856 * 13 12 11 23 23 C 1.48758 * 135.02903 * 179.97438 * 7 5 4 24 24 H 1.08992 * 111.45527 * 94.74973 * 23 7 5 25 25 N 1.31805 * 106.96486 * 359.58574 * 4 3 2 26 26 N 1.28469 * 110.07462 * 0.25746 * 25 4 3 27 27 C 1.46500 * 124.88417 * 180.02562 * 26 25 4 28 28 F 1.39902 * 109.46833 * 29.97885 * 27 26 25 29 29 F 1.39895 * 109.46983 * 149.97575 * 27 26 25 30 30 H 1.09006 * 109.47158 * 270.32447 * 1 2 3 31 31 H 1.08998 * 109.47118 * 30.32343 * 1 2 3 32 32 H 1.09001 * 109.47179 * 150.32658 * 1 2 3 33 33 H 1.08006 * 127.24079 * 359.97438 * 3 2 1 34 34 H 1.09001 * 113.81888 * 39.62859 * 8 7 5 35 35 H 1.08993 * 113.82481 * 268.06437 * 8 7 5 36 36 H 1.09005 * 109.47365 * 23.89734 * 11 9 8 37 37 H 1.08993 * 109.48083 * 263.88247 * 11 9 8 38 38 H 1.08999 * 109.75276 * 60.65501 * 12 11 9 39 39 H 1.09004 * 109.75537 * 181.39927 * 12 11 9 40 40 H 0.96998 * 120.00495 * 180.02562 * 17 16 14 41 41 H 1.08996 * 107.70450 * 198.51424 * 22 13 12 42 42 H 1.09006 * 109.96065 * 80.38036 * 22 13 12 43 43 H 1.08993 * 109.47242 * 269.97768 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6320 0.5853 -0.0033 5 6 4.8765 1.3811 -0.0079 6 8 4.8213 2.5956 -0.0143 7 7 6.0730 0.7609 -0.0049 8 6 6.5202 -0.6479 0.0021 9 6 7.8053 -0.1242 -0.6805 10 1 8.7246 -0.5963 -0.3339 11 6 7.6546 -0.1317 -2.2032 12 6 8.3763 1.0831 -2.7929 13 7 7.7820 2.2903 -2.2105 14 6 7.2432 3.2480 -3.0276 15 1 6.8866 2.9803 -4.0113 16 6 7.1552 4.5629 -2.5916 17 7 7.8387 4.9536 -1.5369 18 14 6.0668 5.7779 -3.5018 19 1 4.7378 5.8425 -2.8424 20 1 6.6974 7.1221 -3.4773 21 1 5.9000 5.3350 -4.9094 22 6 7.7991 2.4744 -0.7691 23 6 7.4912 1.2099 -0.0082 24 1 7.8971 1.2560 1.0023 25 7 3.5419 -0.7296 0.0041 26 7 2.3080 -1.0871 0.0062 27 6 1.8376 -2.4745 0.0145 28 9 2.7698 -3.2789 0.6786 29 9 0.6063 -2.5454 0.6748 30 1 -0.3634 0.0058 1.0277 31 1 -0.3633 0.8871 -0.5188 32 1 -0.3633 -0.8929 -0.5088 33 1 2.0057 2.1260 -0.0004 34 1 5.9214 -1.3030 -0.6307 35 1 6.6856 -1.0524 1.0005 36 1 6.5971 -0.0879 -2.4639 37 1 8.0909 -1.0451 -2.6073 38 1 9.4367 1.0379 -2.5445 39 1 8.2511 1.0963 -3.8756 40 1 7.7770 5.8723 -1.2319 41 1 7.0470 3.2235 -0.5217 42 1 8.7745 2.8442 -0.4528 43 1 1.7206 -2.8246 -1.0110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084376247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:42 Heat of formation + Delta-G solvation = 28.387863 kcal Electronic energy + Delta-G solvation = -30958.661425 eV Core-core repulsion = 26486.469202 eV Total energy + Delta-G solvation = -4472.192222 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -49.82400 -47.91901 -42.72601 -40.07267 -37.42768 -35.11471 -33.17106 -32.79219 -32.02663 -30.07468 -29.14160 -27.47107 -26.92730 -26.27349 -23.81316 -23.48811 -22.19958 -21.36540 -20.87831 -19.42699 -18.72398 -18.16539 -17.76217 -17.61358 -16.81912 -15.92770 -15.84696 -15.42891 -15.29926 -14.71337 -14.59551 -14.35116 -14.17109 -13.82662 -13.71299 -13.44360 -13.42383 -13.30474 -13.12138 -12.90817 -12.80518 -12.49186 -12.25058 -12.22218 -11.82044 -11.40919 -11.11905 -10.84313 -10.62478 -10.55619 -10.40410 -10.11715 -9.81421 -9.74826 -9.64058 -9.42625 -9.07691 -8.99350 -8.26419 -8.01510 -6.56941 -5.60738 -3.01767 1.38939 1.61141 2.09807 3.00946 3.27495 3.51805 3.55144 3.57737 3.60221 3.84140 3.98560 4.27855 4.58196 4.65449 4.72377 4.85253 5.17023 5.21996 5.34753 5.47150 5.52473 5.55442 5.58457 5.63781 5.79216 5.80115 5.86730 5.98629 6.09106 6.21074 6.34497 6.39130 6.43652 6.47749 6.61194 6.67585 6.85688 7.06799 7.53440 7.66513 7.82832 7.98904 8.34683 8.62399 8.79240 9.40820 10.04569 10.53352 11.47504 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.013803 B = 0.003942 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.069696 B = 7100.616425 C = 8387.469460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.020 3.980 3 C -0.169 4.169 4 C 0.030 3.970 5 C 0.616 3.384 6 O -0.507 6.507 7 N -0.619 5.619 8 C 0.107 3.893 9 C -0.112 4.112 10 H 0.086 0.914 11 C -0.115 4.115 12 C 0.144 3.856 13 N -0.583 5.583 14 C -0.251 4.251 15 H 0.064 0.936 16 C 0.010 3.990 17 N -0.904 5.904 18 Si 0.901 3.099 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.281 1.281 22 C 0.164 3.836 23 C 0.129 3.871 24 H 0.076 0.924 25 N -0.249 5.249 26 N -0.356 5.356 27 C 0.505 3.495 28 F -0.168 7.168 29 F -0.176 7.176 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.169 0.831 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.020 0.980 39 H 0.055 0.945 40 H 0.252 0.748 41 H 0.107 0.893 42 H 0.033 0.967 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.182 -18.139 4.276 22.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 C -0.196 4.196 4 C -0.134 4.134 5 C 0.401 3.599 6 O -0.380 6.380 7 N -0.356 5.356 8 C -0.016 4.016 9 C -0.132 4.132 10 H 0.104 0.896 11 C -0.155 4.155 12 C 0.018 3.982 13 N -0.305 5.305 14 C -0.380 4.380 15 H 0.082 0.918 16 C -0.188 4.188 17 N -0.549 5.549 18 Si 0.731 3.269 19 H -0.213 1.213 20 H -0.219 1.219 21 H -0.207 1.207 22 C 0.037 3.963 23 C 0.027 3.973 24 H 0.094 0.906 25 N -0.081 5.081 26 N -0.154 5.154 27 C 0.372 3.628 28 F -0.149 7.149 29 F -0.157 7.157 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.186 0.814 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.125 0.875 42 H 0.051 0.949 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.835 -18.326 4.382 22.251 hybrid contribution -1.171 1.104 -0.053 1.610 sum -13.005 -17.222 4.329 22.011 Atomic orbital electron populations 1.20460 0.86080 1.04025 1.03665 1.21389 0.95544 0.85854 1.07296 1.21682 0.90462 0.99742 1.07763 1.22445 0.95817 0.89045 1.06121 1.16325 0.80041 0.85882 0.77602 1.90889 1.85407 1.12128 1.49534 1.50146 1.04854 1.08808 1.71748 1.23489 0.93713 0.84605 0.99784 1.22858 0.96863 0.96399 0.97041 0.89621 1.21841 1.01661 0.99183 0.92787 1.20777 0.94110 0.86867 0.96478 1.43434 1.67098 1.18800 1.01185 1.19111 1.33169 0.87181 0.98578 0.91797 1.24903 0.98963 0.96723 0.98234 1.69996 1.41508 1.16568 1.26818 0.86298 0.80934 0.80656 0.79005 1.21315 1.21922 1.20692 1.20045 1.01479 0.91957 0.82768 1.23120 0.77198 0.98066 0.98958 0.90646 1.73667 0.99365 1.15569 1.19548 1.46639 1.05034 1.06564 1.57157 1.21389 0.72321 0.75199 0.93896 1.93148 1.66179 1.72042 1.83560 1.93125 1.43064 1.95298 1.84223 0.90049 0.89331 0.90980 0.81384 0.90109 0.90795 0.92132 0.92829 0.96230 0.92649 0.93792 0.87482 0.94929 0.82366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 9.17 36.00 0.33 -0.30 16 2 C 0.02 0.24 6.81 -82.21 -0.56 -0.32 16 3 C -0.17 -2.60 10.73 -39.36 -0.42 -3.02 16 4 C 0.03 0.53 7.09 -82.77 -0.59 -0.05 16 5 C 0.62 13.36 8.01 -12.39 -0.10 13.26 16 6 O -0.51 -13.17 16.21 5.30 0.09 -13.09 16 7 N -0.62 -12.21 3.40 -172.63 -0.59 -12.79 16 8 C 0.11 1.64 7.31 -2.56 -0.02 1.62 16 9 C -0.11 -1.82 4.34 -89.97 -0.39 -2.21 16 10 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 11 C -0.12 -2.01 5.66 -26.67 -0.15 -2.16 16 12 C 0.14 3.04 6.44 -3.92 -0.03 3.02 16 13 N -0.58 -15.14 3.00 -175.36 -0.53 -15.67 16 14 C -0.25 -7.26 9.56 -15.06 -0.14 -7.41 16 15 H 0.06 1.83 7.84 -52.49 -0.41 1.42 16 16 C 0.01 0.30 4.96 -17.43 -0.09 0.22 16 17 N -0.90 -27.65 10.92 55.49 0.61 -27.05 16 18 Si 0.90 23.46 29.58 -169.99 -5.03 18.43 16 19 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 20 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 21 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 22 C 0.16 4.14 4.68 -5.80 -0.03 4.12 16 23 C 0.13 2.58 4.30 -68.08 -0.29 2.29 16 24 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 25 N -0.25 -3.87 10.17 33.42 0.34 -3.53 16 26 N -0.36 -4.36 3.68 -62.36 -0.23 -4.59 16 27 C 0.51 4.07 6.40 59.85 0.38 4.46 16 28 F -0.17 -1.67 17.26 2.25 0.04 -1.63 16 29 F -0.18 -1.33 14.97 2.25 0.03 -1.30 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.42 6.98 -51.93 -0.36 0.05 16 33 H 0.17 2.47 8.06 -52.48 -0.42 2.05 16 34 H 0.08 1.20 7.33 -51.93 -0.38 0.82 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.06 1.18 7.69 -51.93 -0.40 0.78 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 1.15 7.88 -51.93 -0.41 0.74 16 40 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.11 3.18 4.89 -51.93 -0.25 2.93 16 42 H 0.03 0.88 8.03 -51.93 -0.42 0.46 16 43 H 0.16 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 358.12 15.07 5.40 5.40 Total: -1.00 -36.38 358.12 -7.53 -43.91 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -5.57 Total: -1.59 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: -2.09 Total: 13.50 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -0.40 Total: -63.63 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.07 Total: -2.93 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -5.03 Total: 18.43 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.38 -7.53 -43.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084376247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.299 kcal (2) G-P(sol) polarization free energy of solvation -36.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds