Wall clock time and date at job start Sat Apr 11 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47002 * 2 1 4 4 N 1.34232 * 126.28095 * 264.99881 * 3 2 1 5 5 H 0.96990 * 125.73965 * 0.02562 * 4 3 2 6 6 N 1.39935 * 108.52360 * 179.97438 * 4 3 2 7 7 C 1.30532 * 108.89132 * 0.02562 * 6 4 3 8 8 Cl 1.73607 * 126.00205 * 179.97438 * 7 6 4 9 9 C 1.38075 * 126.28123 * 85.00124 * 3 2 1 10 10 C 1.47382 * 126.41917 * 359.73663 * 9 3 2 11 11 O 1.21608 * 120.00011 * 90.00117 * 10 9 3 12 12 N 1.34781 * 120.00477 * 269.99941 * 10 9 3 13 13 C 1.46499 * 120.00230 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.47022 * 35.00403 * 13 12 10 15 15 C 1.52998 * 109.46946 * 274.99926 * 13 12 10 16 16 C 1.52999 * 109.46810 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47328 * 60.00086 * 16 15 13 18 18 C 1.52998 * 109.47105 * 299.99733 * 17 16 15 19 19 C 1.52998 * 109.46724 * 154.99894 * 13 12 10 20 20 H 1.09003 * 109.46955 * 60.00468 * 19 13 12 21 21 N 1.46498 * 109.47260 * 300.00107 * 19 13 12 22 22 C 1.36934 * 119.99681 * 155.00380 * 21 19 13 23 23 H 1.07998 * 120.00671 * 359.97438 * 22 21 19 24 24 C 1.38821 * 120.00027 * 179.97438 * 22 21 19 25 25 N 1.31622 * 119.99537 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00301 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47123 * 59.99571 * 26 24 22 28 28 H 1.48498 * 109.47274 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.46977 * 299.99599 * 26 24 22 30 30 H 1.08998 * 109.47132 * 299.99545 * 1 2 3 31 31 H 1.08996 * 109.47720 * 59.99905 * 1 2 3 32 32 H 1.09008 * 109.46884 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47132 * 240.00455 * 2 1 3 34 34 H 1.09003 * 109.47404 * 120.00281 * 2 1 3 35 35 H 0.97002 * 119.99230 * 0.02562 * 12 10 9 36 36 H 1.08996 * 109.47002 * 300.00007 * 15 13 12 37 37 H 1.09001 * 109.47050 * 60.00407 * 15 13 12 38 38 H 1.09000 * 109.46997 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.47333 * 300.00037 * 16 15 13 40 40 H 1.08996 * 109.47362 * 59.99723 * 17 16 15 41 41 H 1.09004 * 109.46976 * 180.02562 * 17 16 15 42 42 H 1.09000 * 109.47513 * 179.97438 * 18 17 16 43 43 H 1.08996 * 109.47449 * 300.00502 * 18 17 16 44 44 H 0.96999 * 120.00211 * 334.99532 * 21 19 13 45 45 H 0.96996 * 119.99512 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3860 2.1383 -1.0780 5 1 2.3617 1.8293 -1.9970 6 7 2.7945 3.4074 -0.6529 7 6 2.6961 3.4696 0.6473 8 17 3.0893 4.8413 1.6360 9 6 2.2132 2.2235 1.1088 10 6 1.9464 1.8530 2.5101 11 8 2.8239 1.3469 3.1829 12 7 0.7298 2.0751 3.0461 13 6 0.4649 1.7073 4.4392 14 1 1.3632 1.8692 5.0349 15 6 0.0648 0.2322 4.5099 16 6 -0.2125 -0.1517 5.9648 17 6 -1.3505 0.7121 6.5122 18 6 -0.9504 2.1872 6.4415 19 6 -0.6728 2.5712 4.9871 20 1 -1.5712 2.4093 4.3914 21 7 -0.2898 3.9836 4.9193 22 6 -1.2553 4.9524 4.8539 23 1 -2.2992 4.6753 4.8519 24 6 -0.8924 6.2908 4.7902 25 7 0.3797 6.6285 4.7931 26 14 -2.2094 7.6124 4.7003 27 1 -3.0743 7.5321 5.9048 28 1 -1.5659 8.9494 4.6418 29 1 -3.0352 7.4063 3.4834 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 0.0298 2.4785 2.5093 36 1 -0.8335 0.0705 3.9143 37 1 0.8754 -0.3832 4.1196 38 1 -0.4971 -1.2027 6.0153 39 1 0.6856 0.0102 6.5609 40 1 -2.2486 0.5503 5.9162 41 1 -1.5477 0.4389 7.5488 42 1 -1.7613 2.8027 6.8310 43 1 -0.0523 2.3491 7.0374 44 1 0.6477 4.2325 4.9208 45 1 0.6333 7.5637 4.7489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085222455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:46 Heat of formation + Delta-G solvation = 19.970661 kcal Electronic energy + Delta-G solvation = -28597.707430 eV Core-core repulsion = 24676.946891 eV Total energy + Delta-G solvation = -3920.760539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.56045 -39.40141 -37.59416 -36.53267 -34.35323 -33.98770 -33.60164 -31.49189 -31.08189 -29.88605 -28.90181 -27.54921 -24.43462 -23.67014 -22.91897 -21.83731 -21.35035 -20.98424 -19.84533 -19.15781 -17.87289 -17.11071 -16.35393 -16.02721 -15.30704 -15.14999 -14.88977 -14.75775 -14.25046 -14.11813 -13.94382 -13.59849 -13.40328 -13.32348 -12.90730 -12.84415 -12.59497 -12.15714 -12.06041 -11.95373 -11.73187 -11.54649 -11.36289 -11.04391 -10.88264 -10.80770 -10.72014 -10.59111 -10.50589 -10.30981 -10.15587 -9.76255 -9.60267 -9.53089 -9.38896 -8.86724 -8.76150 -8.51711 -6.92583 -5.71983 -3.01300 1.47473 1.65832 2.24242 2.84898 2.93587 3.44696 3.49609 3.51016 3.70927 4.28019 4.55486 4.59777 4.87334 4.92641 5.08701 5.15469 5.19015 5.24683 5.33257 5.40215 5.55071 5.56527 5.57748 5.73398 5.74932 5.82597 5.91135 5.92264 5.96176 6.00093 6.00517 6.14523 6.34462 6.48399 6.51226 6.55089 6.62149 6.88789 6.89873 6.94610 7.13009 7.25247 7.71757 7.98118 8.44627 8.63775 9.56748 10.13399 10.48755 11.49402 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008443 B = 0.005282 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3315.610668 B = 5299.542866 C = 7464.512163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.066 4.066 3 C 0.137 3.863 4 N -0.451 5.451 5 H 0.445 0.555 6 N -0.281 5.281 7 C 0.160 3.840 8 Cl 0.043 6.957 9 C -0.260 4.260 10 C 0.599 3.401 11 O -0.540 6.540 12 N -0.694 5.694 13 C 0.140 3.860 14 H 0.085 0.915 15 C -0.123 4.123 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.133 4.133 19 C 0.174 3.826 20 H 0.049 0.951 21 N -0.720 5.720 22 C -0.241 4.241 23 H 0.068 0.932 24 C -0.007 4.007 25 N -0.924 5.924 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.288 1.288 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.403 0.597 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.386 0.614 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.396 -16.204 -9.764 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 C 0.005 3.995 4 N -0.160 5.160 5 H 0.290 0.710 6 N -0.107 5.107 7 C -0.033 4.033 8 Cl 0.071 6.929 9 C -0.275 4.275 10 C 0.383 3.617 11 O -0.417 6.417 12 N -0.343 5.343 13 C 0.035 3.965 14 H 0.103 0.897 15 C -0.162 4.162 16 C -0.152 4.152 17 C -0.157 4.157 18 C -0.174 4.174 19 C 0.063 3.937 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.372 4.372 23 H 0.086 0.914 24 C -0.204 4.204 25 N -0.572 5.572 26 Si 0.733 3.267 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.238 0.762 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.220 0.780 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.249 -15.624 -10.227 18.715 hybrid contribution -0.881 0.884 -0.025 1.248 sum 0.368 -14.740 -10.253 17.959 Atomic orbital electron populations 1.21782 0.93015 1.02822 1.03123 1.20367 0.97232 0.88182 1.04748 1.21367 0.96743 0.95166 0.86215 1.45801 1.52033 1.09425 1.08727 0.70993 1.77176 1.23793 0.98608 1.11109 1.22829 0.99109 0.90798 0.90530 1.98507 1.92009 1.38330 1.64051 1.19871 1.18217 0.94565 0.94893 1.17033 0.82360 0.77774 0.84558 1.90759 1.44948 1.44132 1.61863 1.45887 1.12951 1.61871 1.13556 1.21337 1.00118 0.93342 0.81716 0.89693 1.21866 1.01070 0.96236 0.97009 1.21469 0.99125 0.98739 0.95839 1.21577 0.97840 0.96259 1.00048 1.22220 1.01621 0.93874 0.99694 1.20437 0.94130 0.85511 0.93618 0.93286 1.42380 1.06750 0.98714 1.88180 1.19107 0.88510 0.86469 1.43141 0.91425 1.24692 0.95797 0.96998 1.02891 1.69657 1.14087 1.16498 1.56943 0.86370 0.80957 0.81687 0.77711 1.21429 1.21824 1.21443 0.91396 0.92360 0.91240 0.89880 0.88388 0.76222 0.92066 0.91937 0.92467 0.91956 0.92446 0.92776 0.91653 0.92453 0.78025 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.73 16 2 C -0.07 -0.53 6.27 -27.88 -0.17 -0.70 16 3 C 0.14 1.60 6.55 -81.60 -0.53 1.07 16 4 N -0.45 -4.92 7.28 33.86 0.25 -4.67 16 5 H 0.44 2.96 8.96 -182.73 -1.64 1.32 16 6 N -0.28 -4.26 12.64 33.18 0.42 -3.84 16 7 C 0.16 2.72 7.89 -16.91 -0.13 2.59 16 8 Cl 0.04 0.81 29.19 -51.86 -1.51 -0.71 16 9 C -0.26 -4.08 5.88 -105.04 -0.62 -4.70 16 10 C 0.60 10.37 7.23 -12.54 -0.09 10.28 16 11 O -0.54 -10.92 16.77 5.27 0.09 -10.83 16 12 N -0.69 -11.35 4.91 -54.90 -0.27 -11.61 16 13 C 0.14 2.31 1.98 -67.93 -0.13 2.18 16 14 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 15 C -0.12 -1.63 5.50 -26.73 -0.15 -1.78 16 16 C -0.11 -1.41 5.92 -26.73 -0.16 -1.57 16 17 C -0.12 -1.57 5.92 -26.73 -0.16 -1.73 16 18 C -0.13 -2.26 5.50 -26.75 -0.15 -2.40 16 19 C 0.17 3.20 2.29 -67.95 -0.16 3.04 16 20 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 21 N -0.72 -16.95 4.95 -53.45 -0.26 -17.22 16 22 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 23 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 24 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 25 N -0.92 -27.21 13.06 55.49 0.72 -26.48 16 26 Si 0.90 22.06 29.55 -169.99 -5.02 17.03 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.88 8.08 -51.93 -0.42 0.46 16 35 H 0.40 6.51 8.59 -40.82 -0.35 6.16 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.39 10.11 7.80 -40.82 -0.32 9.79 16 45 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 388.84 15.07 5.86 5.86 Total: -1.00 -32.30 388.84 -10.22 -42.52 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -8.16 Total: 11.19 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -2.33 Total: -1.23 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: 0.86 Total: -63.83 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 17 Polarization: 0.81 SS G_CDS: -1.51 Total: -0.71 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.30 -10.22 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085222455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.487 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds