Wall clock time and date at job start Sat Apr 11 2020 06:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50704 * 109.47028 * 2 1 4 4 N 1.35641 * 126.43276 * 265.02514 * 3 2 1 5 5 H 0.97001 * 124.93236 * 359.95162 * 4 3 2 6 6 N 1.28473 * 110.12983 * 180.22512 * 4 3 2 7 7 C 1.31831 * 110.13662 * 359.59313 * 6 4 3 8 8 C 1.47660 * 126.45972 * 180.12766 * 7 6 4 9 9 O 1.21575 * 119.99713 * 180.31836 * 8 7 6 10 10 N 1.34771 * 120.00265 * 0.31955 * 8 7 6 11 11 C 1.46503 * 120.00089 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.47422 * 34.99136 * 11 10 8 13 13 C 1.53004 * 109.46714 * 274.99466 * 11 10 8 14 14 C 1.52996 * 109.47083 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47024 * 59.99922 * 14 13 11 16 16 C 1.52993 * 109.47589 * 300.00040 * 15 14 13 17 17 C 1.52993 * 109.47302 * 154.99839 * 11 10 8 18 18 H 1.08998 * 109.47457 * 59.99318 * 17 11 10 19 19 N 1.46498 * 109.46939 * 299.99746 * 17 11 10 20 20 C 1.36936 * 120.00114 * 155.00436 * 19 17 11 21 21 H 1.08004 * 120.00140 * 359.97438 * 20 19 17 22 22 C 1.38813 * 120.00395 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99793 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00174 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47151 * 59.99708 * 24 22 20 26 26 H 1.48499 * 109.46774 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46916 * 299.99435 * 24 22 20 28 28 C 1.35464 * 126.43458 * 85.00114 * 3 2 1 29 29 Cl 1.73597 * 127.23722 * 359.97438 * 28 3 2 30 30 H 1.08999 * 109.46589 * 59.99711 * 1 2 3 31 31 H 1.08993 * 109.46860 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46615 * 300.00004 * 1 2 3 33 33 H 1.08995 * 109.47248 * 239.99695 * 2 1 3 34 34 H 1.09000 * 109.46785 * 119.99530 * 2 1 3 35 35 H 0.97001 * 119.99931 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.47331 * 300.00116 * 13 11 10 37 37 H 1.09004 * 109.47236 * 60.00079 * 13 11 10 38 38 H 1.09003 * 109.47169 * 300.00261 * 14 13 11 39 39 H 1.09000 * 109.47149 * 180.02562 * 14 13 11 40 40 H 1.09001 * 109.47209 * 179.97438 * 15 14 13 41 41 H 1.09003 * 109.46871 * 60.00157 * 15 14 13 42 42 H 1.09003 * 109.47109 * 299.99971 * 16 15 14 43 43 H 1.08996 * 109.47812 * 179.97438 * 16 15 14 44 44 H 0.96998 * 120.00431 * 334.99370 * 19 17 11 45 45 H 0.96994 * 120.00048 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.3901 2.1488 -1.0872 5 1 2.3626 1.8298 -2.0028 6 7 2.7761 3.3202 -0.7275 7 6 2.6928 3.4432 0.5824 8 6 3.0424 4.6386 1.3755 9 8 2.9250 4.6210 2.5855 10 7 3.4917 5.7492 0.7582 11 6 3.8391 6.9350 1.5452 12 1 4.2700 6.6258 2.4974 13 6 2.5791 7.7644 1.8009 14 6 2.9416 9.0025 2.6233 15 6 3.9598 9.8460 1.8534 16 6 5.2198 9.0167 1.5976 17 6 4.8569 7.7783 0.7747 18 1 4.4261 8.0875 -0.1776 19 7 6.0634 6.9842 0.5297 20 6 6.8787 7.2860 -0.5283 21 1 6.6321 8.1093 -1.1824 22 6 8.0216 6.5333 -0.7607 23 7 8.3219 5.5297 0.0361 24 14 9.1334 6.9447 -2.2044 25 1 9.6413 8.3324 -2.0584 26 1 10.2782 5.9993 -2.2325 27 1 8.3646 6.8295 -3.4697 28 6 2.2110 2.2110 1.0857 29 17 1.9109 1.7995 2.7453 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.5858 5.7631 -0.2072 36 1 2.1481 8.0737 0.8487 37 1 1.8538 7.1636 2.3499 38 1 3.3724 8.6929 3.5756 39 1 2.0439 9.5931 2.8059 40 1 4.2178 10.7283 2.4391 41 1 3.5291 10.1556 0.9011 42 1 5.6505 8.7071 2.5498 43 1 5.9450 9.6174 1.0487 44 1 6.2849 6.2447 1.1170 45 1 9.1203 5.0035 -0.1265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085228555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:49 Heat of formation + Delta-G solvation = 19.996275 kcal Electronic energy + Delta-G solvation = -27825.947125 eV Core-core repulsion = 23905.187696 eV Total energy + Delta-G solvation = -3920.759428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.79805 -39.46614 -37.62985 -36.45527 -34.55709 -33.97881 -33.61306 -31.81788 -31.08377 -29.64746 -29.04544 -27.62733 -24.31336 -24.02574 -23.62809 -21.71215 -21.22328 -20.98233 -19.88679 -19.22542 -17.99694 -17.21250 -16.64531 -16.03599 -15.75779 -15.05027 -14.92334 -14.54625 -14.29653 -14.17444 -13.94670 -13.72217 -13.56536 -13.30838 -12.90131 -12.82667 -12.56954 -12.17789 -12.09800 -12.00726 -11.97290 -11.53405 -11.28421 -11.03715 -10.88001 -10.78876 -10.69829 -10.56602 -10.50729 -10.28468 -10.15323 -9.74459 -9.60597 -9.53813 -9.42119 -8.87132 -8.81794 -8.47177 -6.93479 -5.73041 -3.02460 1.54893 1.81056 2.03990 2.88136 3.43894 3.48631 3.49652 3.50535 3.68389 4.27895 4.46164 4.59178 4.63122 4.89319 5.08059 5.13201 5.16841 5.20635 5.27495 5.41680 5.50625 5.57773 5.59062 5.68220 5.77767 5.82388 5.87344 5.93780 5.97368 6.02594 6.04338 6.17659 6.39852 6.51573 6.54742 6.57479 6.64252 6.74253 6.91767 6.96413 7.15107 7.61888 7.71113 8.05005 8.43951 8.63123 9.55574 10.12741 10.47966 11.48878 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009844 B = 0.003800 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.808954 B = 7365.763241 C = 9351.070009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C 0.026 3.974 4 N -0.375 5.375 5 H 0.450 0.550 6 N -0.235 5.235 7 C 0.013 3.987 8 C 0.599 3.401 9 O -0.527 6.527 10 N -0.691 5.691 11 C 0.141 3.859 12 H 0.086 0.914 13 C -0.124 4.124 14 C -0.113 4.113 15 C -0.119 4.119 16 C -0.133 4.133 17 C 0.174 3.826 18 H 0.050 0.950 19 N -0.721 5.721 20 C -0.239 4.239 21 H 0.069 0.931 22 C -0.010 4.010 23 N -0.929 5.929 24 Si 0.904 3.096 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.287 1.287 28 C -0.100 4.100 29 Cl -0.010 7.010 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.409 0.591 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.853 -7.500 -0.295 19.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.100 4.100 4 N -0.090 5.090 5 H 0.295 0.705 6 N -0.070 5.070 7 C -0.150 4.150 8 C 0.382 3.618 9 O -0.402 6.402 10 N -0.341 5.341 11 C 0.036 3.964 12 H 0.104 0.896 13 C -0.163 4.163 14 C -0.151 4.151 15 C -0.158 4.158 16 C -0.174 4.174 17 C 0.063 3.937 18 H 0.068 0.932 19 N -0.361 5.361 20 C -0.370 4.370 21 H 0.087 0.913 22 C -0.207 4.207 23 N -0.577 5.577 24 Si 0.735 3.265 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.214 1.214 28 C -0.137 4.137 29 Cl 0.019 6.981 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.244 0.756 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.219 0.781 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.530 -6.877 -0.361 18.834 hybrid contribution 0.749 -0.688 -0.848 1.324 sum -16.781 -7.565 -1.209 18.447 Atomic orbital electron populations 1.21767 0.93714 1.02406 1.02768 1.20160 0.96683 0.88084 1.04441 1.21136 1.05664 0.96740 0.86491 1.43205 1.47506 1.08755 1.09580 0.70451 1.73746 1.16615 1.02511 1.14137 1.22002 1.06993 0.96362 0.89620 1.16722 0.77744 0.81044 0.86337 1.90802 1.54044 1.82684 1.12621 1.45738 1.64484 1.12271 1.11578 1.21351 0.94675 0.84339 0.96006 0.89561 1.21881 0.97712 0.96499 1.00242 1.21467 0.98691 0.95977 0.98987 1.21582 0.96500 0.97957 0.99722 1.22227 0.96399 0.97776 1.00966 1.20467 0.87430 0.90279 0.95534 0.93166 1.42400 1.23683 1.36362 1.33703 1.19152 1.02225 1.11665 1.03998 0.91291 1.24720 0.98688 0.98198 0.99055 1.69667 1.27462 1.21344 1.39221 0.86322 0.80398 0.77320 0.82425 1.21335 1.21831 1.21387 1.20461 1.10949 0.94452 0.87869 1.98346 1.94392 1.92824 1.12552 0.92596 0.91535 0.91742 0.90126 0.88741 0.75598 0.92034 0.91797 0.91910 0.92417 0.92720 0.92419 0.92402 0.91618 0.78097 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.90 37.16 0.37 -0.56 16 2 C -0.05 -0.39 6.36 -27.88 -0.18 -0.57 16 3 C 0.03 0.29 6.51 -81.90 -0.53 -0.24 16 4 N -0.38 -4.08 6.86 33.62 0.23 -3.85 16 5 H 0.45 3.05 8.96 -190.44 -1.71 1.35 16 6 N -0.23 -3.52 11.91 33.42 0.40 -3.12 16 7 C 0.01 0.22 7.13 -82.76 -0.59 -0.37 16 8 C 0.60 11.25 7.79 -12.42 -0.10 11.15 16 9 O -0.53 -10.87 15.54 5.30 0.08 -10.79 16 10 N -0.69 -12.47 4.91 -54.81 -0.27 -12.74 16 11 C 0.14 2.51 1.98 -67.93 -0.13 2.38 16 12 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 13 C -0.12 -1.84 5.49 -26.73 -0.15 -1.99 16 14 C -0.11 -1.51 5.92 -26.73 -0.16 -1.67 16 15 C -0.12 -1.67 5.92 -26.74 -0.16 -1.83 16 16 C -0.13 -2.35 5.50 -26.71 -0.15 -2.49 16 17 C 0.17 3.37 2.30 -67.91 -0.16 3.21 16 18 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 19 N -0.72 -17.70 4.95 -53.40 -0.26 -17.97 16 20 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 21 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 23 N -0.93 -28.14 13.06 55.49 0.72 -27.41 16 24 Si 0.90 22.29 29.55 -169.99 -5.02 17.26 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 C -0.10 -1.46 6.79 -39.31 -0.27 -1.73 16 29 Cl -0.01 -0.14 28.02 -51.86 -1.45 -1.59 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.41 7.36 8.32 -40.82 -0.34 7.02 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.39 10.47 7.80 -40.82 -0.32 10.15 16 45 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 385.85 15.07 5.81 5.81 Total: -1.00 -32.86 385.85 -10.42 -43.29 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -8.22 Total: 12.84 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -2.44 Total: -1.73 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: 0.82 Total: -65.09 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.45 Total: -1.59 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.86 -10.42 -43.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085228555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.282 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds