Wall clock time and date at job start Sat Apr 11 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35464 * 126.42982 * 2 1 4 4 Cl 1.73601 * 127.24078 * 359.96601 * 3 2 1 5 5 C 1.41555 * 105.52029 * 179.97438 * 3 2 1 6 6 C 1.47656 * 126.46024 * 180.02562 * 5 3 2 7 7 O 1.21576 * 120.00182 * 0.02562 * 6 5 3 8 8 N 1.34777 * 120.00225 * 180.02562 * 6 5 3 9 9 C 1.46501 * 120.00356 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.47337 * 34.99805 * 9 8 6 11 11 C 1.53006 * 109.46837 * 275.00084 * 9 8 6 12 12 C 1.52997 * 109.46952 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47219 * 59.99824 * 12 11 9 14 14 C 1.52994 * 109.47050 * 299.99966 * 13 12 11 15 15 C 1.53000 * 109.47218 * 60.00296 * 14 13 12 16 16 H 1.08998 * 109.47467 * 59.98992 * 15 14 13 17 17 N 1.46498 * 109.47304 * 179.97438 * 15 14 13 18 18 C 1.36933 * 120.00139 * 274.99714 * 17 15 14 19 19 H 1.08004 * 119.99575 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00291 * 180.02562 * 18 17 15 21 21 N 1.31614 * 119.99836 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00139 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47326 * 59.99568 * 22 20 18 24 24 H 1.48500 * 109.47321 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46860 * 299.99347 * 22 20 18 26 26 N 1.31824 * 107.07421 * 359.77320 * 5 3 2 27 27 N 1.28470 * 110.14060 * 0.38640 * 26 5 3 28 28 C 1.46499 * 124.93576 * 179.85952 * 27 26 5 29 29 H 1.09001 * 109.46927 * 270.01703 * 1 2 3 30 30 H 1.08995 * 109.47510 * 30.02257 * 1 2 3 31 31 H 1.08997 * 109.46904 * 150.02281 * 1 2 3 32 32 H 0.97002 * 119.99597 * 0.02562 * 8 6 5 33 33 H 1.08997 * 109.46928 * 299.99971 * 11 9 8 34 34 H 1.08997 * 109.47022 * 60.00216 * 11 9 8 35 35 H 1.09004 * 109.47318 * 300.00146 * 12 11 9 36 36 H 1.09000 * 109.47553 * 179.97438 * 12 11 9 37 37 H 1.08999 * 109.46973 * 179.97438 * 13 12 11 38 38 H 1.08998 * 109.46404 * 60.00220 * 13 12 11 39 39 H 1.08998 * 109.47725 * 299.99446 * 14 13 12 40 40 H 1.09000 * 109.47157 * 179.97438 * 14 13 12 41 41 H 0.97004 * 120.00029 * 95.00017 * 17 15 14 42 42 H 0.97010 * 120.00178 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.47391 * 269.70008 * 28 27 26 44 44 H 1.09001 * 109.46813 * 149.70064 * 28 27 26 45 45 H 1.09004 * 109.47041 * 29.70191 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0899 0.0000 4 17 1.8234 2.7559 -0.0008 5 6 3.6338 0.5847 0.0006 6 6 4.8773 1.3809 0.0014 7 8 4.8215 2.5954 0.0020 8 7 6.0742 0.7613 0.0014 9 6 7.3080 1.5513 0.0027 10 1 7.1599 2.4556 0.5929 11 6 7.6704 1.9335 -1.4338 12 6 8.9585 2.7590 -1.4324 13 6 10.0930 1.9329 -0.8228 14 6 9.7306 1.5508 0.6136 15 6 8.4425 0.7252 0.6123 16 1 8.5910 -0.1791 0.0221 17 7 8.0958 0.3588 1.9876 18 6 8.6524 -0.7532 2.5610 19 1 9.3467 -1.3603 1.9990 20 6 8.3235 -1.1008 3.8640 21 7 7.4770 -0.3612 4.5486 22 14 9.0834 -2.6173 4.6464 23 1 10.5610 -2.4714 4.6760 24 1 8.5734 -2.7673 6.0329 25 1 8.7204 -3.8185 3.8523 26 7 3.5456 -0.7305 0.0059 27 7 2.3126 -1.0913 0.0005 28 6 1.8446 -2.4795 0.0010 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8897 -0.5141 31 1 -0.3633 -0.8902 -0.5135 32 1 6.1187 -0.2077 0.0005 33 1 7.8185 1.0291 -2.0240 34 1 6.8624 2.5223 -1.8679 35 1 8.8099 3.6633 -0.8423 36 1 9.2170 3.0309 -2.4558 37 1 11.0108 2.5209 -0.8222 38 1 10.2416 1.0287 -1.4130 39 1 9.5820 2.4550 1.2038 40 1 10.5386 0.9619 1.0478 41 1 7.4719 0.9038 2.4922 42 1 7.2474 -0.6038 5.4594 43 1 1.7285 -2.8242 -1.0265 44 1 0.8852 -2.5392 0.5149 45 1 2.5719 -3.1079 0.5152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085349256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:52 Heat of formation + Delta-G solvation = 33.778491 kcal Electronic energy + Delta-G solvation = -27995.126487 eV Core-core repulsion = 24074.964700 eV Total energy + Delta-G solvation = -3920.161787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.74152 -39.44736 -37.62204 -36.40303 -33.98619 -33.79608 -33.42751 -32.60291 -31.08155 -29.40561 -27.94045 -27.46207 -26.80954 -23.71653 -23.39476 -21.63287 -21.00007 -20.93753 -19.78420 -19.09904 -17.46069 -16.98976 -16.59806 -16.40274 -15.73178 -14.95783 -14.78931 -14.46738 -14.12109 -13.86910 -13.71412 -13.59074 -13.53739 -13.36692 -12.98933 -12.88385 -12.81375 -12.65566 -12.47690 -12.03643 -12.00145 -11.77017 -11.36682 -11.03133 -10.87660 -10.77407 -10.68833 -10.52841 -10.49203 -10.27625 -10.14816 -9.72301 -9.59365 -9.50810 -9.17581 -8.86574 -8.70246 -8.43498 -6.92876 -5.72500 -3.01863 1.59119 1.86323 1.92795 2.69383 3.43874 3.48619 3.49670 3.54546 3.72971 4.27796 4.37371 4.59564 4.72030 4.80727 4.90713 5.11415 5.14457 5.20373 5.21510 5.27770 5.42897 5.49064 5.55596 5.58503 5.60549 5.78897 5.88932 5.96499 6.02221 6.05363 6.06331 6.18609 6.41330 6.52358 6.53715 6.57159 6.59519 6.65265 6.92948 6.98087 7.16613 7.70823 7.71462 8.09219 8.44466 8.66924 9.56016 10.13473 10.48739 11.49467 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008985 B = 0.004150 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.537940 B = 6746.073942 C = 8822.230991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.019 3.981 3 C -0.103 4.103 4 Cl -0.012 7.012 5 C 0.009 3.991 6 C 0.600 3.400 7 O -0.528 6.528 8 N -0.692 5.692 9 C 0.142 3.858 10 H 0.086 0.914 11 C -0.124 4.124 12 C -0.113 4.113 13 C -0.119 4.119 14 C -0.132 4.132 15 C 0.174 3.826 16 H 0.050 0.950 17 N -0.721 5.721 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.011 4.011 21 N -0.929 5.929 22 Si 0.904 3.096 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.287 1.287 26 N -0.239 5.239 27 N -0.280 5.280 28 C 0.087 3.913 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.408 0.592 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.847 -0.746 -13.837 18.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C -0.140 4.140 4 Cl 0.016 6.984 5 C -0.153 4.153 6 C 0.383 3.617 7 O -0.403 6.403 8 N -0.341 5.341 9 C 0.036 3.964 10 H 0.104 0.896 11 C -0.163 4.163 12 C -0.151 4.151 13 C -0.157 4.157 14 C -0.173 4.173 15 C 0.063 3.937 16 H 0.068 0.932 17 N -0.362 5.362 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.207 4.207 21 N -0.577 5.577 22 Si 0.735 3.265 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.214 1.214 26 N -0.074 5.074 27 N -0.069 5.069 28 C -0.053 4.053 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.244 0.756 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.219 0.781 42 H 0.064 0.936 43 H 0.105 0.895 44 H 0.114 0.886 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.233 -1.010 -13.748 18.430 hybrid contribution -0.258 -0.475 0.828 0.989 sum -12.491 -1.485 -12.920 18.032 Atomic orbital electron populations 1.20369 0.86007 1.04081 1.03689 1.21062 0.95310 0.85890 1.08366 1.20487 0.92117 0.87475 1.13962 1.98340 1.90806 1.12071 1.97147 1.21949 0.94414 0.89388 1.09516 1.16719 0.81618 0.86386 0.76958 1.90796 1.86560 1.12409 1.50496 1.45732 1.04565 1.11040 1.72793 1.21342 0.83591 0.95510 0.95914 0.89590 1.21879 0.97630 1.00014 0.96806 1.21470 0.94697 0.98693 1.00259 1.21582 0.97383 0.99354 0.97431 1.22214 0.99822 1.00645 0.94662 1.20456 0.90655 0.94746 0.87849 0.93197 1.42403 1.53599 1.30696 1.09461 1.19151 1.20380 1.01694 0.95749 0.91296 1.24720 0.99887 0.99033 0.97062 1.69670 1.37399 1.39813 1.10844 0.86320 0.78700 0.83001 0.78432 1.21330 1.21836 1.21400 1.73715 1.01524 1.13858 1.18312 1.45268 1.02686 1.07304 1.51600 1.22215 1.01906 0.76645 1.04510 0.89902 0.89362 0.90777 0.75639 0.92054 0.91801 0.91908 0.92426 0.92724 0.92427 0.92407 0.91629 0.78093 0.93556 0.89530 0.88576 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 9.75 36.01 0.35 -0.26 16 2 C 0.02 0.23 6.94 -81.90 -0.57 -0.34 16 3 C -0.10 -1.60 6.79 -39.31 -0.27 -1.87 16 4 Cl -0.01 -0.18 27.92 -51.86 -1.45 -1.63 16 5 C 0.01 0.16 7.13 -82.76 -0.59 -0.43 16 6 C 0.60 11.64 7.79 -12.41 -0.10 11.54 16 7 O -0.53 -11.18 15.54 5.30 0.08 -11.10 16 8 N -0.69 -12.81 4.91 -54.81 -0.27 -13.08 16 9 C 0.14 2.56 1.98 -67.93 -0.13 2.43 16 10 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 11 C -0.12 -1.87 5.49 -26.73 -0.15 -2.02 16 12 C -0.11 -1.54 5.92 -26.73 -0.16 -1.69 16 13 C -0.12 -1.69 5.92 -26.73 -0.16 -1.85 16 14 C -0.13 -2.36 5.50 -26.73 -0.15 -2.51 16 15 C 0.17 3.41 2.29 -67.93 -0.16 3.26 16 16 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 17 N -0.72 -17.87 4.95 -53.43 -0.26 -18.13 16 18 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 19 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 20 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 21 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 22 Si 0.90 22.32 29.55 -169.99 -5.02 17.30 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 N -0.24 -3.85 11.66 33.42 0.39 -3.46 16 27 N -0.28 -3.46 3.72 -63.68 -0.24 -3.70 16 28 C 0.09 0.61 10.94 59.85 0.65 1.26 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.62 8.03 -51.93 -0.42 0.20 16 31 H 0.07 0.35 7.68 -51.93 -0.40 -0.05 16 32 H 0.41 7.56 8.32 -40.82 -0.34 7.22 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.39 10.57 7.80 -40.82 -0.32 10.25 16 42 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.10 0.40 7.58 -51.93 -0.39 0.01 16 45 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 385.27 15.07 5.81 5.81 Total: -1.00 -33.89 385.27 -8.78 -42.67 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -6.88 Total: 12.43 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -1.66 Total: 0.46 kcal Atomic # 7 Polarization: -66.28 SS G_CDS: 0.34 Total: -65.94 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.45 Total: -1.63 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.89 -8.78 -42.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085349256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.446 kcal (2) G-P(sol) polarization free energy of solvation -33.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds