Wall clock time and date at job start Sat Apr 11 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47176 * 2 1 4 4 N 1.30413 * 125.97649 * 270.20064 * 3 2 1 5 5 N 1.39927 * 108.95992 * 180.23953 * 4 3 2 6 6 C 1.46497 * 125.75175 * 179.73545 * 5 4 3 7 7 C 1.34352 * 108.49739 * 359.73776 * 5 4 3 8 8 Cl 1.73596 * 126.31674 * 179.97438 * 7 5 4 9 9 C 1.38275 * 107.36465 * 0.02562 * 7 5 4 10 10 C 1.47294 * 126.43651 * 179.97438 * 9 7 5 11 11 O 1.21623 * 119.99862 * 90.02374 * 10 9 7 12 12 N 1.34774 * 120.00097 * 270.02281 * 10 9 7 13 13 C 1.46495 * 119.99903 * 359.97438 * 12 10 9 14 14 C 1.46507 * 119.99875 * 179.97438 * 12 10 9 15 15 C 1.52990 * 109.47115 * 264.31138 * 14 12 10 16 16 H 1.09000 * 112.97030 * 293.05423 * 15 14 12 17 17 C 1.53950 * 113.77049 * 64.73241 * 15 14 12 18 18 C 1.53953 * 86.28868 * 138.01946 * 17 15 14 19 19 N 1.47578 * 86.11554 * 336.39493 * 18 17 15 20 20 C 1.36936 * 134.48931 * 204.63977 * 19 18 17 21 21 H 1.08007 * 120.00174 * 179.91791 * 20 19 18 22 22 C 1.38814 * 120.00379 * 359.92207 * 20 19 18 23 23 N 1.31623 * 119.99584 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00309 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47019 * 60.00057 * 24 22 20 26 26 H 1.48501 * 109.47179 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46918 * 299.99711 * 24 22 20 28 28 H 1.08994 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47120 * 299.99949 * 1 2 3 30 30 H 1.09006 * 109.47393 * 59.99686 * 1 2 3 31 31 H 1.09000 * 109.46483 * 240.00374 * 2 1 3 32 32 H 1.08990 * 109.47096 * 120.00415 * 2 1 3 33 33 H 1.08996 * 109.46886 * 270.00227 * 6 5 4 34 34 H 1.09002 * 109.47058 * 30.00195 * 6 5 4 35 35 H 1.08996 * 109.47308 * 150.00356 * 6 5 4 36 36 H 1.09000 * 109.47010 * 275.45096 * 13 12 10 37 37 H 1.08999 * 109.46999 * 35.45181 * 13 12 10 38 38 H 1.08998 * 109.47135 * 155.44851 * 13 12 10 39 39 H 1.08996 * 109.46654 * 144.31059 * 14 12 10 40 40 H 1.08996 * 109.46886 * 24.31698 * 14 12 10 41 41 H 1.09001 * 113.74496 * 252.36398 * 17 15 14 42 42 H 1.08997 * 113.74040 * 23.57145 * 17 15 14 43 43 H 1.09000 * 113.76701 * 90.69772 * 18 17 15 44 44 H 1.09005 * 113.76660 * 221.98347 * 18 17 15 45 45 H 0.96999 * 119.99699 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2843 2.1444 -1.0554 5 7 2.7368 3.4035 -0.6459 6 6 3.1296 4.5018 -1.5323 7 6 2.7506 3.4355 0.6972 8 17 3.2340 4.7759 1.6888 9 6 2.3098 2.2033 1.1438 10 6 2.1622 1.7834 2.5479 11 8 1.1096 1.9651 3.1296 12 7 3.1935 1.1977 3.1881 13 6 4.4611 0.9783 2.4873 14 6 3.0469 0.7806 4.5848 15 6 3.5928 1.8750 5.5039 16 1 4.6714 2.0052 5.4162 17 6 2.8012 3.1936 5.4369 18 6 2.9436 3.2407 6.9691 19 7 3.1171 1.7769 6.8975 20 6 2.9169 0.7429 7.7726 21 1 3.1251 -0.2718 7.4665 22 6 2.4463 0.9986 9.0533 23 7 2.1921 2.2350 9.4262 24 14 2.1726 -0.4120 10.2469 25 1 3.4552 -1.1260 10.4719 26 1 1.6711 0.1225 11.5384 27 1 1.1746 -1.3539 9.6795 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 4.1942 4.4270 -1.7537 34 1 2.5604 4.4413 -2.4599 35 1 2.9264 5.4542 -1.0428 36 1 4.4084 0.0465 1.9242 37 1 4.6460 1.8064 1.8030 38 1 5.2720 0.9189 3.2132 39 1 3.6031 -0.1424 4.7485 40 1 1.9926 0.6133 4.8052 41 1 3.3288 3.9967 4.9223 42 1 1.7739 3.0718 5.0936 43 1 3.8315 3.7721 7.3117 44 1 2.0356 3.5525 7.4854 45 1 1.8636 2.4138 10.3213 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085916198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:06 Heat of formation + Delta-G solvation = 97.850270 kcal Electronic energy + Delta-G solvation = -28320.745582 eV Core-core repulsion = 24403.362156 eV Total energy + Delta-G solvation = -3917.383426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.73662 -39.37246 -37.50884 -37.20613 -35.06604 -34.99246 -32.17392 -32.02206 -30.57061 -28.48010 -27.71972 -27.23731 -26.15216 -24.05066 -23.20760 -22.85475 -21.66777 -20.34445 -19.19172 -18.82566 -17.57221 -16.67191 -16.50457 -16.05020 -15.78381 -15.60886 -14.91041 -14.64957 -14.41477 -13.92757 -13.78495 -13.66110 -13.44851 -13.27473 -13.06509 -12.85325 -12.61099 -12.51155 -12.25022 -11.97103 -11.91995 -11.83271 -11.71287 -11.38593 -11.28914 -10.94082 -10.81583 -10.76248 -10.59386 -10.37917 -9.82014 -9.67193 -9.59259 -9.53239 -9.40440 -8.78961 -8.68322 -8.24243 -6.75848 -5.65442 -2.97564 1.08888 1.20935 2.11815 2.22567 2.75197 3.31100 3.45933 3.49898 3.51166 4.00916 4.45823 4.55010 4.71045 4.76444 4.81460 4.98249 5.11496 5.16314 5.20326 5.25293 5.34800 5.36578 5.48082 5.56258 5.69658 5.73363 5.76114 5.86662 5.96579 6.04595 6.07675 6.16655 6.22583 6.27792 6.48571 6.66201 6.81558 6.85866 6.92044 7.19956 7.38440 7.57352 7.68747 7.72663 8.10133 8.45488 9.14893 9.81867 10.72939 11.51407 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017007 B = 0.003297 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.979198 B = 8491.772329 C = 9457.552548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.045 4.045 3 C 0.122 3.878 4 N -0.274 5.274 5 N -0.356 5.356 6 C 0.094 3.906 7 C 0.152 3.848 8 Cl 0.017 6.983 9 C -0.242 4.242 10 C 0.593 3.407 11 O -0.515 6.515 12 N -0.599 5.599 13 C 0.085 3.915 14 C 0.116 3.884 15 C 0.129 3.871 16 H 0.040 0.960 17 C -0.156 4.156 18 C 0.160 3.840 19 N -0.599 5.599 20 C -0.221 4.221 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.920 5.920 24 Si 0.909 3.091 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.284 1.284 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.039 0.961 42 H 0.086 0.914 43 H 0.021 0.979 44 H 0.071 0.929 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.177 2.256 -25.055 25.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 C -0.045 4.045 4 N -0.096 5.096 5 N -0.139 5.139 6 C -0.047 4.047 7 C -0.004 4.004 8 Cl 0.045 6.955 9 C -0.258 4.258 10 C 0.378 3.622 11 O -0.390 6.390 12 N -0.332 5.332 13 C -0.059 4.059 14 C -0.007 4.007 15 C 0.021 3.979 16 H 0.057 0.943 17 C -0.194 4.194 18 C 0.035 3.965 19 N -0.326 5.326 20 C -0.349 4.349 21 H 0.095 0.905 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.740 3.260 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.211 1.211 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.058 0.942 42 H 0.104 0.896 43 H 0.039 0.961 44 H 0.090 0.910 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.619 2.508 -25.675 26.050 hybrid contribution 0.356 -0.336 1.614 1.686 sum 3.975 2.172 -24.061 24.484 Atomic orbital electron populations 1.21727 0.93456 1.02443 1.02929 1.20068 0.96955 0.87602 1.03845 1.22284 0.96850 0.96999 0.88334 1.77234 1.21330 0.89490 1.21567 1.48331 1.50549 1.12322 1.02656 1.22045 1.02022 0.86101 0.94533 1.21961 1.02560 0.91828 0.84092 1.98460 1.89457 1.42288 1.65264 1.19855 1.16706 0.93704 0.95553 1.17066 0.83713 0.77615 0.83798 1.90828 1.27357 1.53836 1.66968 1.47724 1.12551 1.59942 1.12994 1.21672 0.86041 1.00745 0.97394 1.21862 1.03848 0.97338 0.77678 1.22497 0.95564 0.93373 0.86451 0.94269 1.23797 1.00702 0.95808 0.99074 1.22179 0.99168 0.84625 0.90509 1.45919 1.75416 1.02831 1.08393 1.18941 1.37320 0.86402 0.92254 0.90464 1.24758 1.01983 0.96418 0.97254 1.69830 1.50562 1.17379 1.18959 0.86245 0.77878 0.81316 0.80583 1.21339 1.21669 1.21085 0.91577 0.91523 0.92468 0.89722 0.89539 0.89838 0.88355 0.89049 0.92906 0.92200 0.90585 0.91355 0.88654 0.94222 0.89560 0.96080 0.91049 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.89 37.16 0.37 -1.12 16 2 C -0.05 -0.46 6.33 -27.88 -0.18 -0.64 16 3 C 0.12 1.51 6.52 -82.02 -0.53 0.98 16 4 N -0.27 -3.29 12.49 33.90 0.42 -2.87 16 5 N -0.36 -3.80 3.98 -64.33 -0.26 -4.06 16 6 C 0.09 0.56 11.28 59.85 0.67 1.24 16 7 C 0.15 1.89 7.22 -16.44 -0.12 1.77 16 8 Cl 0.02 0.20 28.56 -51.86 -1.48 -1.28 16 9 C -0.24 -3.38 4.20 -105.02 -0.44 -3.82 16 10 C 0.59 9.78 6.63 -12.58 -0.08 9.70 16 11 O -0.52 -10.57 15.04 5.26 0.08 -10.49 16 12 N -0.60 -9.13 2.79 -182.91 -0.51 -9.64 16 13 C 0.09 0.97 10.18 59.84 0.61 1.58 16 14 C 0.12 2.13 5.39 -4.04 -0.02 2.10 16 15 C 0.13 2.71 4.58 -66.87 -0.31 2.41 16 16 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.16 -3.31 7.25 -25.80 -0.19 -3.49 16 18 C 0.16 4.04 7.51 -2.97 -0.02 4.02 16 19 N -0.60 -15.75 3.58 -170.74 -0.61 -16.36 16 20 C -0.22 -6.28 10.51 -15.06 -0.16 -6.44 16 21 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 23 N -0.92 -28.11 11.39 55.49 0.63 -27.48 16 24 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 27 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.88 8.00 -51.93 -0.42 0.47 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.44 7.77 -51.93 -0.40 0.04 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.65 6.86 -51.93 -0.36 0.29 16 38 H 0.08 0.81 8.03 -51.93 -0.42 0.39 16 39 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 40 H 0.10 2.05 7.26 -51.93 -0.38 1.67 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 1.99 6.56 -51.93 -0.34 1.65 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.07 1.99 7.16 -51.93 -0.37 1.62 16 45 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 389.02 15.07 5.86 5.86 Total: -1.00 -35.04 389.02 -8.26 -43.29 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -6.88 Total: -2.49 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -0.49 Total: 7.95 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: -0.32 Total: -60.41 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Atomic # 17 Polarization: 0.20 SS G_CDS: -1.48 Total: -1.28 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.04 -8.26 -43.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085916198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.141 kcal (2) G-P(sol) polarization free energy of solvation -35.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds