Wall clock time and date at job start Sat Apr 11 2020 06:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47176 * 2 1 4 4 N 1.30413 * 125.97649 * 270.20064 * 3 2 1 5 5 N 1.39927 * 108.95992 * 180.23953 * 4 3 2 6 6 C 1.46497 * 125.75175 * 179.73545 * 5 4 3 7 7 C 1.34352 * 108.49739 * 359.73776 * 5 4 3 8 8 Cl 1.73596 * 126.31674 * 179.97438 * 7 5 4 9 9 C 1.38275 * 107.36465 * 0.02562 * 7 5 4 10 10 C 1.47294 * 126.43651 * 179.97438 * 9 7 5 11 11 O 1.21623 * 119.99862 * 90.02374 * 10 9 7 12 12 N 1.34774 * 120.00097 * 270.02281 * 10 9 7 13 13 C 1.46495 * 119.99903 * 359.97438 * 12 10 9 14 14 C 1.46507 * 119.99875 * 179.97438 * 12 10 9 15 15 C 1.52990 * 109.47115 * 264.31138 * 14 12 10 16 16 H 1.09000 * 112.97030 * 293.05423 * 15 14 12 17 17 C 1.53950 * 113.77049 * 64.73241 * 15 14 12 18 18 C 1.53953 * 86.28868 * 138.01946 * 17 15 14 19 19 N 1.47578 * 86.11554 * 336.39493 * 18 17 15 20 20 C 1.36936 * 134.48931 * 204.63977 * 19 18 17 21 21 H 1.08007 * 120.00174 * 179.91791 * 20 19 18 22 22 C 1.38814 * 120.00379 * 359.92207 * 20 19 18 23 23 N 1.31623 * 119.99584 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00309 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47019 * 60.00057 * 24 22 20 26 26 H 1.48501 * 109.47179 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46918 * 299.99711 * 24 22 20 28 28 H 1.08994 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47120 * 299.99949 * 1 2 3 30 30 H 1.09006 * 109.47393 * 59.99686 * 1 2 3 31 31 H 1.09000 * 109.46483 * 240.00374 * 2 1 3 32 32 H 1.08990 * 109.47096 * 120.00415 * 2 1 3 33 33 H 1.08996 * 109.46886 * 270.00227 * 6 5 4 34 34 H 1.09002 * 109.47058 * 30.00195 * 6 5 4 35 35 H 1.08996 * 109.47308 * 150.00356 * 6 5 4 36 36 H 1.09000 * 109.47010 * 275.45096 * 13 12 10 37 37 H 1.08999 * 109.46999 * 35.45181 * 13 12 10 38 38 H 1.08998 * 109.47135 * 155.44851 * 13 12 10 39 39 H 1.08996 * 109.46654 * 144.31059 * 14 12 10 40 40 H 1.08996 * 109.46886 * 24.31698 * 14 12 10 41 41 H 1.09001 * 113.74496 * 252.36398 * 17 15 14 42 42 H 1.08997 * 113.74040 * 23.57145 * 17 15 14 43 43 H 1.09000 * 113.76701 * 90.69772 * 18 17 15 44 44 H 1.09005 * 113.76660 * 221.98347 * 18 17 15 45 45 H 0.96999 * 119.99699 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2843 2.1444 -1.0554 5 7 2.7368 3.4035 -0.6459 6 6 3.1296 4.5018 -1.5323 7 6 2.7506 3.4355 0.6972 8 17 3.2340 4.7759 1.6888 9 6 2.3098 2.2033 1.1438 10 6 2.1622 1.7834 2.5479 11 8 1.1096 1.9651 3.1296 12 7 3.1935 1.1977 3.1881 13 6 4.4611 0.9783 2.4873 14 6 3.0469 0.7806 4.5848 15 6 3.5928 1.8750 5.5039 16 1 4.6714 2.0052 5.4162 17 6 2.8012 3.1936 5.4369 18 6 2.9436 3.2407 6.9691 19 7 3.1171 1.7769 6.8975 20 6 2.9169 0.7429 7.7726 21 1 3.1251 -0.2718 7.4665 22 6 2.4463 0.9986 9.0533 23 7 2.1921 2.2350 9.4262 24 14 2.1726 -0.4120 10.2469 25 1 3.4552 -1.1260 10.4719 26 1 1.6711 0.1225 11.5384 27 1 1.1746 -1.3539 9.6795 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 4.1942 4.4270 -1.7537 34 1 2.5604 4.4413 -2.4599 35 1 2.9264 5.4542 -1.0428 36 1 4.4084 0.0465 1.9242 37 1 4.6460 1.8064 1.8030 38 1 5.2720 0.9189 3.2132 39 1 3.6031 -0.1424 4.7485 40 1 1.9926 0.6133 4.8052 41 1 3.3288 3.9967 4.9223 42 1 1.7739 3.0718 5.0936 43 1 3.8315 3.7721 7.3117 44 1 2.0356 3.5525 7.4854 45 1 1.8636 2.4138 10.3213 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085916198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:05 Heat of formation + Delta-G solvation = 75.725775 kcal Electronic energy + Delta-G solvation = -28321.704972 eV Core-core repulsion = 24403.362156 eV Total energy + Delta-G solvation = -3918.342816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.66040 -40.75267 -39.26125 -38.13367 -36.40300 -35.80956 -34.18954 -32.89300 -31.61807 -29.85327 -29.77009 -28.04910 -27.24161 -25.29959 -25.01739 -24.16483 -22.85863 -21.34754 -20.80800 -20.17254 -18.76431 -18.42784 -17.67627 -17.14440 -16.98856 -16.75847 -16.51558 -15.99761 -15.75862 -15.34258 -15.00865 -14.87425 -14.54599 -14.19452 -14.04345 -13.92846 -13.83333 -13.64573 -13.53905 -13.32760 -13.07518 -12.88742 -12.83294 -12.75208 -12.54528 -12.52686 -12.44474 -12.29158 -12.19408 -11.78086 -11.70574 -11.57219 -11.25932 -10.98751 -10.79939 -10.37226 -9.75373 -9.61468 -8.85265 -7.84361 -5.17707 0.16687 0.29375 1.16651 1.45518 1.46851 1.50758 1.52306 1.56478 2.08315 2.53145 3.16162 3.35932 3.46914 3.67633 3.77538 3.96201 4.13787 4.17840 4.26762 4.31790 4.32465 4.36803 4.37003 4.43357 4.51750 4.58895 4.61366 4.67770 4.81734 4.87350 4.91062 5.00053 5.04890 5.06088 5.12114 5.18507 5.27575 5.34101 5.50119 5.53758 5.57589 5.78289 5.98509 6.30592 6.42780 6.95679 7.19926 7.66655 8.62887 9.32894 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017007 B = 0.003297 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.979198 B = 8491.772329 C = 9457.552548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 C 0.119 3.881 4 N -0.279 5.279 5 N -0.347 5.347 6 C 0.081 3.919 7 C 0.152 3.848 8 Cl 0.021 6.979 9 C -0.266 4.266 10 C 0.597 3.403 11 O -0.566 6.566 12 N -0.594 5.594 13 C 0.081 3.919 14 C 0.130 3.870 15 C 0.137 3.863 16 H 0.062 0.938 17 C -0.130 4.130 18 C 0.155 3.845 19 N -0.626 5.626 20 C -0.227 4.227 21 H 0.089 0.911 22 C -0.073 4.073 23 N -0.958 5.958 24 Si 0.978 3.022 25 H -0.274 1.274 26 H -0.298 1.298 27 H -0.277 1.277 28 H 0.084 0.916 29 H 0.035 0.965 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.019 0.981 44 H 0.034 0.966 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.924 1.264 -27.603 28.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 C -0.047 4.047 4 N -0.102 5.102 5 N -0.128 5.128 6 C -0.058 4.058 7 C -0.006 4.006 8 Cl 0.049 6.951 9 C -0.283 4.283 10 C 0.384 3.616 11 O -0.444 6.444 12 N -0.326 5.326 13 C -0.061 4.061 14 C 0.006 3.994 15 C 0.030 3.970 16 H 0.079 0.921 17 C -0.168 4.168 18 C 0.030 3.970 19 N -0.353 5.353 20 C -0.355 4.355 21 H 0.107 0.893 22 C -0.265 4.265 23 N -0.607 5.607 24 Si 0.806 3.194 25 H -0.199 1.199 26 H -0.225 1.225 27 H -0.203 1.203 28 H 0.103 0.897 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.037 0.963 44 H 0.052 0.948 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.420 1.503 -28.306 28.860 hybrid contribution -0.149 0.060 2.278 2.284 sum 5.272 1.563 -26.028 26.603 Atomic orbital electron populations 1.21683 0.93718 1.03238 1.01464 1.20161 0.96642 0.86795 1.04868 1.22528 0.96647 0.97773 0.87721 1.77212 1.21556 0.90024 1.21402 1.48704 1.49002 1.12670 1.02463 1.22495 1.03667 0.85151 0.94497 1.21952 1.02249 0.91432 0.84947 1.98460 1.89356 1.41928 1.65355 1.19669 1.19171 0.95047 0.94399 1.17404 0.82985 0.76616 0.84617 1.90806 1.29376 1.55859 1.68361 1.47722 1.13894 1.59248 1.11711 1.21927 0.84177 1.02255 0.97733 1.21447 1.01680 0.97168 0.79125 1.22651 0.96394 0.93742 0.84198 0.92112 1.23480 1.00098 0.97162 0.96087 1.22098 0.97377 0.84690 0.92844 1.46244 1.75961 1.02737 1.10366 1.19408 1.35934 0.87557 0.92604 0.89307 1.25648 1.02692 0.98887 0.99290 1.70043 1.52266 1.19532 1.18869 0.85157 0.78171 0.78319 0.77736 1.19942 1.22451 1.20307 0.89694 0.94622 0.92169 0.87326 0.89776 0.87624 0.86836 0.87843 0.90654 0.91370 0.89362 0.89383 0.92242 0.91464 0.91541 0.96273 0.94759 0.94547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.89 71.98 0.71 -2.07 16 2 C -0.05 -0.85 6.33 29.85 0.19 -0.66 16 3 C 0.12 2.77 6.52 43.53 0.28 3.05 16 4 N -0.28 -6.08 12.49 -46.66 -0.58 -6.67 16 5 N -0.35 -6.58 3.98 -357.43 -1.42 -8.00 16 6 C 0.08 0.73 11.28 127.77 1.44 2.17 16 7 C 0.15 3.53 7.22 84.32 0.61 4.14 16 8 Cl 0.02 0.45 28.56 -2.72 -0.08 0.38 16 9 C -0.27 -7.15 4.20 -20.12 -0.08 -7.23 16 10 C 0.60 19.50 6.63 86.63 0.57 20.07 16 11 O -0.57 -23.95 15.04 -4.10 -0.06 -24.01 16 12 N -0.59 -17.29 2.79 -850.85 -2.37 -19.67 16 13 C 0.08 1.60 10.18 127.77 1.30 2.90 16 14 C 0.13 4.67 5.39 86.37 0.47 5.14 16 15 C 0.14 5.62 4.58 45.09 0.21 5.83 16 16 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 17 C -0.13 -5.55 7.25 31.26 0.23 -5.32 16 18 C 0.16 8.06 7.51 86.48 0.65 8.71 16 19 N -0.63 -33.28 3.58 -694.10 -2.48 -35.76 16 20 C -0.23 -12.95 10.51 84.03 0.88 -12.06 16 21 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 22 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 23 N -0.96 -60.46 11.39 21.65 0.25 -60.21 16 24 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 25 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 26 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 27 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.60 8.00 -2.39 -0.02 1.58 16 33 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.10 0.71 7.77 -2.39 -0.02 0.69 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.27 6.86 -2.39 -0.02 1.26 16 38 H 0.09 1.56 8.03 -2.39 -0.02 1.54 16 39 H 0.09 2.81 8.11 -2.39 -0.02 2.79 16 40 H 0.06 2.60 7.26 -2.39 -0.02 2.59 16 41 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.07 3.15 6.56 -2.39 -0.02 3.13 16 43 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.03 2.01 7.16 -2.38 -0.02 1.99 16 45 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -78.49 389.02 4.19 -74.30 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.99 Total: 9.72 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: 7.92 Total: 20.83 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -6.61 Total: -130.31 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.06 Total: -24.01 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Atomic # 17 Polarization: 0.45 SS G_CDS: -0.08 Total: 0.38 kcal Total: -78.49 4.19 -74.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085916198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.023 kcal (2) G-P(sol) polarization free energy of solvation -78.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds