Wall clock time and date at job start Sat Apr 11 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.50703 * 109.47025 * 2 1 4 4 N 1.35639 * 126.43522 * 264.97528 * 3 2 1 5 5 H 0.96998 * 124.93527 * 0.02892 * 4 3 2 6 6 N 1.28467 * 110.13112 * 179.97438 * 4 3 2 7 7 C 1.31824 * 110.13748 * 0.02562 * 6 4 3 8 8 C 1.47667 * 126.45988 * 179.97438 * 7 6 4 9 9 O 1.21583 * 119.99841 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00216 * 0.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27873 * 10 8 7 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 H 1.09002 * 110.43235 * 307.53699 * 12 11 10 14 14 C 1.54883 * 110.48836 * 70.22030 * 12 11 10 15 15 C 1.54896 * 102.75066 * 156.62266 * 14 12 11 16 16 C 1.54265 * 104.19299 * 322.05954 * 15 14 12 17 17 H 1.09001 * 110.07172 * 142.91634 * 16 15 14 18 18 N 1.46504 * 110.03332 * 264.32435 * 16 15 14 19 19 C 1.36936 * 120.00134 * 272.16962 * 18 16 15 20 20 H 1.08013 * 119.99610 * 359.97438 * 19 18 16 21 21 C 1.38809 * 120.00493 * 179.97438 * 19 18 16 22 22 N 1.31624 * 119.99439 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00393 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47139 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47149 * 119.99851 * 23 21 19 26 26 H 1.48497 * 109.47162 * 240.00198 * 23 21 19 27 27 C 1.53875 * 106.59842 * 23.60911 * 16 15 14 28 28 C 1.35460 * 126.43234 * 85.30197 * 3 2 1 29 29 Cl 1.73604 * 127.24085 * 359.97438 * 28 3 2 30 30 H 1.09005 * 109.47051 * 299.99270 * 1 2 3 31 31 H 1.09000 * 109.47758 * 59.99643 * 1 2 3 32 32 H 1.09007 * 109.47361 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47151 * 240.00438 * 2 1 3 34 34 H 1.09000 * 109.47758 * 120.00357 * 2 1 3 35 35 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 37 37 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 38 38 H 1.09006 * 110.75929 * 274.93584 * 14 12 11 39 39 H 1.09008 * 110.75693 * 38.30996 * 14 12 11 40 40 H 1.09000 * 110.48395 * 203.38273 * 15 14 12 41 41 H 1.08994 * 110.59817 * 80.79300 * 15 14 12 42 42 H 0.97005 * 119.99883 * 92.16597 * 18 16 15 43 43 H 0.97004 * 119.99713 * 179.97438 * 22 21 19 44 44 H 1.09004 * 110.03139 * 240.71474 * 27 16 15 45 45 H 1.08998 * 110.02985 * 119.28722 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.3908 2.1485 -1.0871 5 1 2.3631 1.8297 -2.0027 6 7 2.7715 3.3217 -0.7278 7 6 2.6924 3.4431 0.5824 8 6 3.0413 4.6389 1.3755 9 8 2.9230 4.6216 2.5855 10 7 3.4908 5.7495 0.7582 11 6 3.8426 6.9337 1.5456 12 6 4.3271 8.0429 0.6098 13 1 5.1183 7.6722 -0.0420 14 6 3.1485 8.6000 -0.2264 15 6 3.6418 10.0171 -0.6107 16 6 4.3860 10.5125 0.6465 17 1 5.2606 11.0955 0.3581 18 7 3.4903 11.3268 1.4717 19 6 3.3818 12.6724 1.2418 20 1 3.9570 13.1334 0.4523 21 6 2.5328 13.4439 2.0232 22 7 1.8315 12.8819 2.9849 23 14 2.3855 15.2795 1.7100 24 1 3.2720 15.6619 0.5817 25 1 0.9788 15.6122 1.3697 26 1 2.7890 16.0237 2.9300 27 6 4.8218 9.2572 1.4225 28 6 2.2162 2.2091 1.0862 29 17 1.9243 1.7946 2.7466 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8932 -0.5137 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.5855 5.7631 -0.2071 36 1 2.9663 7.2784 2.0946 37 1 4.6355 6.6798 2.2492 38 1 2.9857 7.9929 -1.1170 39 1 2.2410 8.6568 0.3750 40 1 2.7963 10.6676 -0.8347 41 1 4.3209 9.9690 -1.4619 42 1 2.9740 10.9128 2.1809 43 1 1.2385 13.4211 3.5313 44 1 4.3668 9.2539 2.4130 45 1 5.9079 9.2307 1.5099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086719813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:18 Heat of formation + Delta-G solvation = 22.289715 kcal Electronic energy + Delta-G solvation = -26467.902885 eV Core-core repulsion = 22547.242908 eV Total energy + Delta-G solvation = -3920.659977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.17520 -39.51803 -38.01266 -36.75775 -34.90358 -34.75769 -33.24074 -32.18511 -30.63407 -29.80166 -28.88882 -27.31638 -25.10990 -24.34820 -23.34672 -22.93422 -21.56575 -20.42894 -19.68358 -19.07692 -18.33243 -17.21266 -17.02481 -16.41311 -16.07502 -15.33032 -15.19987 -14.87795 -14.82713 -14.55117 -14.32756 -13.94093 -13.56329 -13.25134 -13.17867 -13.02921 -12.59565 -12.41578 -12.30453 -12.11342 -11.80569 -11.57949 -11.36567 -11.15462 -10.92763 -10.77900 -10.70643 -10.52952 -10.42867 -10.20682 -10.16249 -10.04267 -9.83108 -9.81435 -9.58162 -9.15762 -8.97619 -8.84049 -6.88394 -5.71710 -2.99772 1.14522 1.44876 1.72003 2.52077 3.09115 3.23245 3.46056 3.51555 3.53914 3.97046 4.11024 4.30442 4.63275 4.66230 4.78098 4.88778 4.93592 5.01261 5.04904 5.17382 5.29827 5.43427 5.51596 5.60074 5.65030 5.67192 5.78663 5.82163 5.97700 6.07820 6.15087 6.19290 6.28083 6.36638 6.41451 6.46859 6.53405 6.71460 6.82297 6.97203 7.15569 7.20674 7.54415 7.75955 8.16244 8.47643 9.58153 10.18368 10.52283 11.50973 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021930 B = 0.001962 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.473970 B =14267.925566 C =14598.950126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.056 4.056 3 C 0.032 3.968 4 N -0.374 5.374 5 H 0.451 0.549 6 N -0.243 5.243 7 C 0.009 3.991 8 C 0.594 3.406 9 O -0.515 6.515 10 N -0.711 5.711 11 C 0.126 3.874 12 C -0.103 4.103 13 H 0.075 0.925 14 C -0.113 4.113 15 C -0.146 4.146 16 C 0.174 3.826 17 H 0.048 0.952 18 N -0.721 5.721 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.292 1.292 27 C -0.121 4.121 28 C -0.101 4.101 29 Cl -0.004 7.004 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.405 0.595 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.073 0.927 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.351 -30.365 -10.275 32.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.095 4.095 3 C -0.095 4.095 4 N -0.089 5.089 5 H 0.297 0.703 6 N -0.079 5.079 7 C -0.153 4.153 8 C 0.377 3.623 9 O -0.388 6.388 10 N -0.362 5.362 11 C 0.004 3.996 12 C -0.122 4.122 13 H 0.093 0.907 14 C -0.150 4.150 15 C -0.186 4.186 16 C 0.064 3.936 17 H 0.066 0.934 18 N -0.362 5.362 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.581 5.581 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.160 4.160 28 C -0.138 4.138 29 Cl 0.024 6.976 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.240 0.760 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.577 -29.565 -10.187 31.311 hybrid contribution -0.549 0.301 -0.171 0.649 sum 1.028 -29.265 -10.358 31.061 Atomic orbital electron populations 1.21779 0.93449 1.02671 1.02945 1.20190 0.96943 0.87815 1.04505 1.21202 1.05075 0.96943 0.86302 1.43192 1.47560 1.08490 1.09707 0.70293 1.73645 1.17741 1.02554 1.13944 1.21961 1.07591 0.96196 0.89590 1.16769 0.77929 0.81140 0.86451 1.90867 1.52843 1.82477 1.12652 1.45867 1.66039 1.12953 1.11363 1.21597 1.00844 0.83412 0.93789 1.22231 0.98353 0.94569 0.97029 0.90702 1.22501 0.97505 0.96635 0.98387 1.23114 1.00803 0.95766 0.98962 1.20803 0.92599 0.90270 0.89949 0.93404 1.42559 1.49949 1.05151 1.38527 1.19305 1.20034 0.84403 1.13075 0.91194 1.24745 0.99856 0.97986 0.98569 1.69678 1.31074 1.34599 1.22715 0.86143 0.77256 0.85725 0.77234 1.20623 1.21978 1.21954 1.22465 1.00136 0.93612 0.99781 1.20510 1.10695 0.94356 0.88273 1.98371 1.94514 1.92702 1.11978 0.91616 0.92503 0.91328 0.90044 0.88626 0.76025 0.90634 0.91310 0.92959 0.91270 0.91018 0.93368 0.78241 0.93616 0.90826 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.89 37.15 0.37 -0.25 16 2 C -0.06 -0.23 6.36 -27.89 -0.18 -0.40 16 3 C 0.03 0.23 6.51 -81.90 -0.53 -0.30 16 4 N -0.37 -2.43 6.86 33.62 0.23 -2.20 16 5 H 0.45 1.11 8.96 -190.44 -1.71 -0.60 16 6 N -0.24 -2.39 11.91 33.42 0.40 -1.99 16 7 C 0.01 0.11 7.13 -82.76 -0.59 -0.48 16 8 C 0.59 8.54 7.82 -12.41 -0.10 8.44 16 9 O -0.52 -8.96 15.87 5.29 0.08 -8.87 16 10 N -0.71 -8.97 5.44 -61.31 -0.33 -9.30 16 11 C 0.13 1.73 4.96 -4.04 -0.02 1.71 16 12 C -0.10 -1.38 2.89 -88.97 -0.26 -1.64 16 13 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 14 C -0.11 -1.68 6.19 -24.74 -0.15 -1.83 16 15 C -0.15 -2.55 6.54 -25.07 -0.16 -2.71 16 16 C 0.17 3.42 3.55 -66.81 -0.24 3.18 16 17 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 18 N -0.72 -18.02 5.08 -52.34 -0.27 -18.29 16 19 C -0.24 -6.60 9.96 -15.06 -0.15 -6.75 16 20 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 22 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 23 Si 0.90 22.64 29.55 -169.99 -5.02 17.62 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 27 C -0.12 -1.96 6.14 -25.62 -0.16 -2.11 16 28 C -0.10 -1.10 6.79 -39.31 -0.27 -1.37 16 29 Cl 0.00 -0.05 28.02 -51.86 -1.45 -1.50 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.18 8.14 -51.92 -0.42 -0.24 16 33 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.40 4.39 8.16 -40.82 -0.33 4.05 16 36 H 0.08 1.18 8.02 -51.93 -0.42 0.76 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.17 7.97 -51.92 -0.41 0.76 16 40 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.38 10.26 7.52 -40.82 -0.31 9.95 16 43 H 0.25 7.52 8.31 -40.82 -0.34 7.19 16 44 H 0.07 1.30 7.31 -51.93 -0.38 0.92 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 388.96 15.07 5.86 5.86 Total: -1.00 -34.05 388.96 -10.48 -44.53 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -8.17 Total: 7.00 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -2.53 Total: -5.06 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: 0.75 Total: -59.57 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.08 Total: -8.87 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.45 Total: -1.50 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.05 -10.48 -44.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086719813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.818 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds