Wall clock time and date at job start Sat Apr 11 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47124 * 2 1 4 4 H 1.08995 * 109.99662 * 304.79659 * 3 2 1 5 5 C 1.54326 * 109.99189 * 183.75869 * 3 2 1 6 6 H 1.09004 * 110.51677 * 336.97806 * 5 3 2 7 7 N 1.46494 * 110.85311 * 100.19819 * 5 3 2 8 8 C 1.34776 * 120.00369 * 200.14372 * 7 5 3 9 9 O 1.21645 * 119.99780 * 5.27963 * 8 7 5 10 10 C 1.47035 * 120.00124 * 185.27442 * 8 7 5 11 11 C 1.38534 * 126.90796 * 265.05979 * 10 8 7 12 12 Cl 1.73608 * 127.33567 * 0.02562 * 11 10 8 13 13 C 1.39811 * 105.32710 * 179.91812 * 11 10 8 14 14 N 1.30836 * 107.87276 * 0.35230 * 13 11 10 15 15 N 1.28436 * 110.98562 * 359.77785 * 14 13 11 16 16 C 1.46494 * 125.18803 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47071 * 275.12659 * 16 15 14 18 18 C 1.55158 * 103.02095 * 218.67045 * 5 3 2 19 19 C 1.54906 * 101.58154 * 35.30421 * 18 5 3 20 20 N 1.47021 * 109.87880 * 65.88892 * 3 2 1 21 21 C 1.36939 * 125.65179 * 298.39534 * 20 3 2 22 22 H 1.07991 * 120.00044 * 336.05262 * 21 20 3 23 23 C 1.38813 * 119.99877 * 156.04735 * 21 20 3 24 24 N 1.31616 * 120.00347 * 332.19873 * 23 21 20 25 25 Si 1.86806 * 119.99728 * 152.19285 * 23 21 20 26 26 H 1.48502 * 109.47049 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47036 * 240.00470 * 25 23 21 28 28 H 1.48498 * 109.46811 * 119.99910 * 25 23 21 29 29 H 1.09005 * 109.47453 * 292.09626 * 1 2 3 30 30 H 1.09003 * 109.47649 * 52.09627 * 1 2 3 31 31 H 1.08998 * 109.47371 * 172.10063 * 1 2 3 32 32 H 1.09004 * 109.47176 * 240.00574 * 2 1 3 33 33 H 1.08997 * 109.47557 * 120.00460 * 2 1 3 34 34 H 0.97006 * 119.99628 * 20.14932 * 7 5 3 35 35 H 1.07998 * 126.06197 * 180.10753 * 13 11 10 36 36 H 1.08998 * 109.47248 * 35.12340 * 16 15 14 37 37 H 1.09003 * 109.46819 * 155.12904 * 16 15 14 38 38 H 1.08997 * 109.47458 * 59.99807 * 17 16 15 39 39 H 1.09006 * 109.47482 * 180.02562 * 17 16 15 40 40 H 1.09005 * 109.47400 * 300.00194 * 17 16 15 41 41 H 1.09006 * 111.00193 * 277.23303 * 18 5 3 42 42 H 1.08997 * 111.00871 * 153.38155 * 18 5 3 43 43 H 1.09004 * 110.36996 * 204.15502 * 19 18 5 44 44 H 1.08997 * 110.46099 * 81.88417 * 19 18 5 45 45 H 0.97007 * 119.99985 * 354.40023 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6131 1.9888 -0.8411 5 6 3.5802 1.4576 -0.0951 6 1 3.9941 0.5133 0.2587 7 7 4.0154 1.7345 -1.4662 8 6 5.2608 1.4005 -1.8585 9 8 5.9906 0.7836 -1.1057 10 6 5.7373 1.7816 -3.1962 11 6 5.7074 1.0045 -4.3427 12 17 5.1023 -0.6149 -4.5015 13 6 6.2661 1.8031 -5.3451 14 7 6.5977 2.9489 -4.8075 15 7 6.3046 2.9724 -3.5573 16 6 6.5413 4.1026 -2.6558 17 6 7.9749 4.0399 -2.1249 18 6 3.9776 2.6203 0.8524 19 6 2.9089 2.4928 1.9664 20 7 1.6741 2.1021 1.2620 21 6 0.3979 2.3134 1.7115 22 1 -0.4218 2.3549 1.0097 23 6 0.1580 2.4741 3.0692 24 7 0.9593 1.9133 3.9500 25 14 -1.3021 3.4863 3.6463 26 1 -2.0417 4.0049 2.4675 27 1 -0.8208 4.6248 4.4693 28 1 -2.2048 2.6335 4.4605 29 1 -0.3634 0.3866 0.9522 30 1 -0.3634 0.6313 -0.8109 31 1 -0.3634 -1.0179 -0.1412 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.4071 2.1583 -2.0918 35 1 6.4034 1.5224 -6.3789 36 1 6.3953 5.0367 -3.1981 37 1 5.8422 4.0539 -1.8209 38 1 8.6740 4.0884 -2.9597 39 1 8.1509 4.8806 -1.4537 40 1 8.1211 3.1057 -1.5825 41 1 3.9000 3.5818 0.3448 42 1 4.9801 2.4720 1.2538 43 1 2.7712 3.4489 2.4714 44 1 3.1960 1.7238 2.6836 45 1 1.6686 1.3219 3.6531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087585150.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:24 Heat of formation + Delta-G solvation = 54.734543 kcal Electronic energy + Delta-G solvation = -28293.933625 eV Core-core repulsion = 24374.680561 eV Total energy + Delta-G solvation = -3919.253064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.90117 -39.79078 -37.94537 -36.80645 -34.88419 -34.40230 -32.66005 -32.18067 -30.96709 -30.11428 -28.67486 -27.02680 -24.84399 -24.37375 -23.25286 -21.99853 -21.72273 -20.46503 -20.41726 -19.56161 -18.27859 -17.42896 -16.67388 -16.42326 -15.95068 -15.54038 -14.84950 -14.60405 -14.56639 -14.32639 -14.11188 -13.69484 -13.55461 -13.23073 -13.10683 -12.96239 -12.53117 -12.48408 -12.25680 -12.09358 -11.91862 -11.74913 -11.71535 -11.17622 -11.02395 -10.82548 -10.74840 -10.59521 -10.39641 -10.20650 -10.15783 -10.08319 -9.89819 -9.58434 -9.50990 -9.02006 -8.97158 -8.42465 -6.98353 -6.13347 -3.24702 1.20757 1.51043 2.10835 2.19851 2.58065 3.02004 3.47695 3.49702 3.62886 4.10968 4.32390 4.50114 4.53419 4.61171 4.76592 4.91571 4.98494 5.09214 5.18802 5.21406 5.26087 5.35146 5.36728 5.57732 5.70134 5.83036 5.87344 5.91129 5.93083 6.07370 6.16155 6.23519 6.29399 6.37216 6.53492 6.59212 6.68809 6.85233 6.94475 7.03273 7.28569 7.34578 7.60910 7.80170 7.97175 8.43841 8.95502 9.73887 10.30866 11.16299 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015822 B = 0.003218 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.283069 B = 8697.818310 C = 9682.786340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.158 3.842 4 H 0.038 0.962 5 C 0.133 3.867 6 H 0.098 0.902 7 N -0.699 5.699 8 C 0.590 3.410 9 O -0.512 6.512 10 C -0.007 4.007 11 C -0.117 4.117 12 Cl -0.019 7.019 13 C 0.022 3.978 14 N -0.271 5.271 15 N -0.260 5.260 16 C 0.114 3.886 17 C -0.171 4.171 18 C -0.145 4.145 19 C 0.145 3.855 20 N -0.589 5.589 21 C -0.329 4.329 22 H 0.066 0.934 23 C -0.022 4.022 24 N -0.911 5.911 25 Si 1.066 2.934 26 H -0.292 1.292 27 H -0.290 1.290 28 H -0.294 1.294 29 H 0.092 0.908 30 H 0.038 0.962 31 H 0.030 0.970 32 H 0.040 0.960 33 H 0.056 0.944 34 H 0.402 0.598 35 H 0.195 0.805 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.052 0.948 44 H 0.030 0.970 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.563 2.460 -16.472 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.050 3.950 4 H 0.055 0.945 5 C 0.029 3.971 6 H 0.115 0.885 7 N -0.349 5.349 8 C 0.371 3.629 9 O -0.386 6.386 10 C -0.137 4.137 11 C -0.155 4.155 12 Cl 0.010 6.990 13 C -0.156 4.156 14 N -0.101 5.101 15 N -0.049 5.049 16 C -0.005 4.005 17 C -0.229 4.229 18 C -0.184 4.184 19 C 0.019 3.981 20 N -0.315 5.315 21 C -0.457 4.457 22 H 0.084 0.916 23 C -0.225 4.225 24 N -0.550 5.550 25 Si 0.896 3.104 26 H -0.218 1.218 27 H -0.217 1.217 28 H -0.222 1.222 29 H 0.110 0.890 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.237 0.763 35 H 0.211 0.789 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.048 0.952 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.670 3.703 -14.664 18.509 hybrid contribution 0.076 -1.496 -1.611 2.200 sum 10.746 2.207 -16.275 19.627 Atomic orbital electron populations 1.21895 0.95570 0.99001 1.04159 1.21893 0.97163 0.97448 0.99827 1.21177 0.89235 0.92559 0.91993 0.94464 1.22236 0.96154 0.99465 0.79256 0.88451 1.46050 1.13352 1.61124 1.14422 1.16827 0.82596 0.79944 0.83518 1.90874 1.55967 1.38759 1.52967 1.21339 1.07339 0.89218 0.95838 1.21263 1.10229 0.90478 0.93572 1.98366 1.86130 1.16870 1.97680 1.23510 1.02340 0.89314 1.00428 1.73220 1.21045 1.23100 0.92721 1.45767 1.41645 1.11125 1.06379 1.22162 0.99940 0.86429 0.91978 1.22183 0.94293 1.04159 1.02291 1.23213 0.99605 0.97534 0.98052 1.21521 0.85151 0.98825 0.92628 1.44543 1.01932 1.65458 1.19555 1.19653 0.83551 1.49605 0.92903 0.91617 1.25782 1.03882 1.00852 0.92024 1.70714 1.20165 1.28123 1.36027 0.83513 0.75185 0.76494 0.75168 1.21780 1.21716 1.22157 0.88953 0.94286 0.95122 0.94137 0.92484 0.76280 0.78855 0.87313 0.87913 0.91190 0.89591 0.91205 0.91597 0.91457 0.92962 0.95191 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.96 37.16 0.33 -2.51 16 2 C -0.12 -2.32 5.46 -26.73 -0.15 -2.47 16 3 C 0.16 2.98 3.00 -66.95 -0.20 2.78 16 4 H 0.04 0.70 7.69 -51.93 -0.40 0.30 16 5 C 0.13 2.22 2.80 -66.10 -0.19 2.03 16 6 H 0.10 1.79 7.33 -51.93 -0.38 1.40 16 7 N -0.70 -9.68 5.20 -53.23 -0.28 -9.96 16 8 C 0.59 8.63 6.91 -12.70 -0.09 8.55 16 9 O -0.51 -9.23 16.81 5.24 0.09 -9.14 16 10 C -0.01 -0.09 6.72 -82.00 -0.55 -0.64 16 11 C -0.12 -1.43 6.89 -38.88 -0.27 -1.70 16 12 Cl -0.02 -0.23 29.24 -51.86 -1.52 -1.74 16 13 C 0.02 0.23 12.04 -17.39 -0.21 0.02 16 14 N -0.27 -3.06 11.89 30.61 0.36 -2.70 16 15 N -0.26 -2.92 3.35 -57.11 -0.19 -3.11 16 16 C 0.11 0.97 6.91 -4.05 -0.03 0.94 16 17 C -0.17 -1.36 10.24 37.16 0.38 -0.98 16 18 C -0.14 -2.45 6.77 -24.58 -0.17 -2.62 16 19 C 0.14 3.12 5.53 -2.53 -0.01 3.10 16 20 N -0.59 -13.46 2.94 -162.57 -0.48 -13.94 16 21 C -0.33 -8.43 7.30 -15.06 -0.11 -8.54 16 22 H 0.07 1.70 7.11 -52.49 -0.37 1.32 16 23 C -0.02 -0.60 5.13 -17.43 -0.09 -0.69 16 24 N -0.91 -26.14 13.04 55.49 0.72 -25.41 16 25 Si 1.07 24.30 30.00 -169.99 -5.10 19.20 16 26 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 H 0.09 2.07 5.46 -51.93 -0.28 1.79 16 30 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.40 4.87 8.31 -40.82 -0.34 4.53 16 35 H 0.19 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.86 7.65 -51.93 -0.40 0.46 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.03 0.71 6.79 -51.93 -0.35 0.36 16 45 H 0.27 7.82 6.31 -40.82 -0.26 7.56 16 LS Contribution 382.73 15.07 5.77 5.77 Total: -1.00 -30.69 382.73 -8.61 -39.30 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.65 Total: 4.44 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -1.34 Total: -2.72 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.14 Total: -55.11 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.10 Total: 19.20 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.52 Total: -1.74 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.69 -8.61 -39.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087585150.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.038 kcal (2) G-P(sol) polarization free energy of solvation -30.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds